Miyakogusa Predicted Gene

Lj2g3v1550060.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1550060.1 Non Chatacterized Hit- tr|I1MWE1|I1MWE1_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,56.86,1e-17,seg,NULL,CUFF.37412.1
         (142 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G31460.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    66   6e-12

>AT1G31460.1 | Symbols:  | unknown protein; FUNCTIONS IN:
          molecular_function unknown; INVOLVED IN:
          biological_process unknown; LOCATED IN: plasma
          membrane; EXPRESSED IN: 23 plant structures; EXPRESSED
          DURING: 13 growth stages; BEST Arabidopsis thaliana
          protein match is: unknown protein (TAIR:AT1G23270.1);
          Has 1251 Blast hits to 756 proteins in 185 species:
          Archae - 0; Bacteria - 295; Metazoa - 374; Fungi - 176;
          Plants - 58; Viruses - 17; Other Eukaryotes - 331
          (source: NCBI BLink). | chr1:11261705-11262610 REVERSE
          LENGTH=301
          Length = 301

 Score = 66.2 bits (160), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 32/60 (53%), Positives = 38/60 (63%)

Query: 1  MVKFSDLSDTEDSAINEIISXXXXXXXXXXXXXINCAGVTDSVLPSDLDSRFRKLKSLPA 60
          M  F   SDT+DSA+ E+IS             INC+G TDS LP DL+SRFR+LKSLPA
Sbjct: 1  MADFGYFSDTDDSAVEELISQAKELSDLEQVAAINCSGFTDSTLPDDLESRFRRLKSLPA 60