Miyakogusa Predicted Gene

Lj2g3v1550000.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1550000.1 Non Chatacterized Hit- tr|I1HMM9|I1HMM9_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,32.3,1e-17,Myb_DNA-bind_4,NULL; coiled-coil,NULL;
MYB_LIKE,Myb-like domain; TRANSCRIPTION FACTOR,NULL; ZINC
FIN,CUFF.37405.1
         (307 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G38250.1 | Symbols:  | Homeodomain-like superfamily protein |...   132   3e-31
AT5G01380.1 | Symbols:  | Homeodomain-like superfamily protein |...   113   1e-25
AT1G13450.3 | Symbols: GT-1 | Homeodomain-like superfamily prote...    77   2e-14
AT1G13450.2 | Symbols: GT-1 | Homeodomain-like superfamily prote...    76   3e-14
AT1G13450.1 | Symbols: GT-1 | Homeodomain-like superfamily prote...    76   3e-14
AT3G25990.1 | Symbols:  | Homeodomain-like superfamily protein |...    74   1e-13
AT1G76890.2 | Symbols: GT2, AT-GT2 | Duplicated homeodomain-like...    69   5e-12
AT1G76880.1 | Symbols:  | Duplicated homeodomain-like superfamil...    65   8e-11
AT5G63420.1 | Symbols: emb2746 | RNA-metabolising metallo-beta-l...    59   5e-09
AT1G33240.1 | Symbols: AT-GTL1, AT-GTL2, GTL1 | GT-2-like 1 | ch...    58   8e-09
AT5G28300.1 | Symbols:  | Duplicated homeodomain-like superfamil...    58   9e-09
AT5G47660.1 | Symbols:  | Homeodomain-like superfamily protein |...    57   2e-08
AT5G03680.1 | Symbols: PTL | Duplicated homeodomain-like superfa...    51   1e-06
AT3G10000.1 | Symbols: EDA31 | Homeodomain-like superfamily prot...    51   1e-06

>AT2G38250.1 | Symbols:  | Homeodomain-like superfamily protein |
           chr2:16018384-16019500 FORWARD LENGTH=289
          Length = 289

 Score =  132 bits (332), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 91/265 (34%), Positives = 130/265 (49%), Gaps = 13/265 (4%)

Query: 44  GPSQPQWTQQETREFIAIRAELERDFTASKRNKTLWEVVSSKMRERGFRRSPEQCKCKWK 103
           G   PQW+ +ET+E I IR EL++ F  +KRNK LWEV+S+KMR++ F RSPEQCKCKWK
Sbjct: 36  GDRFPQWSVEETKELIGIRGELDQTFMETKRNKLLWEVISNKMRDKSFPRSPEQCKCKWK 95

Query: 104 NLVNRYKGKETSDPEHGK-QCPFFEELHAVFTQRAQNMQRLLLESENRSAQTKKGMKRLX 162
           NLV R+KG ET + E  + Q PF++++  +FT R   MQR+L            G  R  
Sbjct: 96  NLVTRFKGCETMEAETARQQFPFYDDMQNIFTTR---MQRMLWAESEGGGGGTSGAAR-K 151

Query: 163 XXXXXXXXXXXXXXXXXXXXXXPARSNTRKRKASDKTAMEKSSKGNNPGNNTNSASIQEM 222
                                 P   N +K  A  +     SS         ++  ++E+
Sbjct: 152 REYSSDEEEENVNEELVDVSNDPKILNPKKNIAKKRKGGSNSS--------NSNNGVREV 203

Query: 223 LKEFFQHQLXXXXXXXXXXXXXAHERQLFEQEWRQTMEKLERERLMVEQAWXXXXXXXXX 282
           L+EF +HQ+               ER   E+EWR+ ME+LE+ERL +E+ W         
Sbjct: 204 LEEFMRHQVRMESEWREGWEAREKERAEKEEEWRRKMEELEKERLAMERMWRDREEQRRS 263

Query: 283 XXXXXXXXXDALLTTLLNKLIHESN 307
                    D+L+  LL KL  + +
Sbjct: 264 REEMRAEKRDSLINALLAKLTRDGS 288


>AT5G01380.1 | Symbols:  | Homeodomain-like superfamily protein |
           chr5:155784-157451 REVERSE LENGTH=323
          Length = 323

 Score =  113 bits (283), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 86/274 (31%), Positives = 129/274 (47%), Gaps = 22/274 (8%)

Query: 48  PQWTQQETREFIAIRAELERDFTASKRNKTLWEVVSSKMRERGFRRSPEQCKCKWKNLVN 107
           PQW+ +ET+E +AIR EL++ F  +KRNK LWEVV++KM ++GF RS EQCK KWKNLV 
Sbjct: 50  PQWSIEETKELLAIREELDQTFMETKRNKLLWEVVAAKMADKGFVRSAEQCKSKWKNLVT 109

Query: 108 RYKGKETSDPEHGK-QCPFFEELHAVFTQRAQNMQRLLLESENRSAQTKKGMKRLXXXXX 166
           RYK  ET++P+  + Q PF+ E+ ++F  R Q M  L  E+   S  +K+   +      
Sbjct: 110 RYKACETTEPDAIRQQFPFYNEIQSIFEARMQRM--LWSEATEPSTSSKRKHHQFSSDDE 167

Query: 167 XXX-------------XXXXXXXXXXXXXXXPARSNTRKRKASDKTAMEKSSKGNNPGNN 213
                                             +N RKR    K  +   +K    GN 
Sbjct: 168 EEEVDEPNQDINEELLSLVETQKRETEVITTSTSTNPRKRAKKGK-GVASGTKAETAGN- 225

Query: 214 TNSASIQEMLKEFFQHQLXXXXXXXXXXXXXAHERQLFEQEWRQTMEKLERERLMVEQAW 273
               +++++L+EF +  +               ER+  E+EWR+ M +LE ER   E+ W
Sbjct: 226 ----TLKDILEEFMRQTVKMEKEWRDAWEMKEIEREKREKEWRRRMAELEEERAATERRW 281

Query: 274 XXXXXXXXXXXXXXXXXXDALLTTLLNKLIHESN 307
                             D+L+  LLN+L  + N
Sbjct: 282 MEREEERRLREEARAQKRDSLIDALLNRLNRDHN 315


>AT1G13450.3 | Symbols: GT-1 | Homeodomain-like superfamily protein
           | chr1:4613708-4615115 REVERSE LENGTH=278
          Length = 278

 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/92 (39%), Positives = 55/92 (59%), Gaps = 1/92 (1%)

Query: 50  WTQQETREFIAIRAELERDFTASKRNKTLWEVVSSKMRERGFRRSPEQCKCKWKNLVNRY 109
           W Q ETR  I  R  ++  F  SK NK LWE +SSKMRE+GF RSP  C  KW+NL+  +
Sbjct: 87  WVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPTMCTDKWRNLLKEF 146

Query: 110 KGKETSDPEHGK-QCPFFEELHAVFTQRAQNM 140
           K  +  D  +G  +  +++E+  +  +R++ +
Sbjct: 147 KKAKHHDRGNGSAKMSYYKEIEDILRERSKKV 178


>AT1G13450.2 | Symbols: GT-1 | Homeodomain-like superfamily protein
           | chr1:4612999-4615115 REVERSE LENGTH=361
          Length = 361

 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 36/92 (39%), Positives = 55/92 (59%), Gaps = 1/92 (1%)

Query: 50  WTQQETREFIAIRAELERDFTASKRNKTLWEVVSSKMRERGFRRSPEQCKCKWKNLVNRY 109
           W Q ETR  I  R  ++  F  SK NK LWE +SSKMRE+GF RSP  C  KW+NL+  +
Sbjct: 87  WVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPTMCTDKWRNLLKEF 146

Query: 110 KGKETSDPEHGK-QCPFFEELHAVFTQRAQNM 140
           K  +  D  +G  +  +++E+  +  +R++ +
Sbjct: 147 KKAKHHDRGNGSAKMSYYKEIEDILRERSKKV 178


>AT1G13450.1 | Symbols: GT-1 | Homeodomain-like superfamily protein
           | chr1:4612999-4615115 REVERSE LENGTH=406
          Length = 406

 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 36/92 (39%), Positives = 55/92 (59%), Gaps = 1/92 (1%)

Query: 50  WTQQETREFIAIRAELERDFTASKRNKTLWEVVSSKMRERGFRRSPEQCKCKWKNLVNRY 109
           W Q ETR  I  R  ++  F  SK NK LWE +SSKMRE+GF RSP  C  KW+NL+  +
Sbjct: 87  WVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPTMCTDKWRNLLKEF 146

Query: 110 KGKETSDPEHGK-QCPFFEELHAVFTQRAQNM 140
           K  +  D  +G  +  +++E+  +  +R++ +
Sbjct: 147 KKAKHHDRGNGSAKMSYYKEIEDILRERSKKV 178


>AT3G25990.1 | Symbols:  | Homeodomain-like superfamily protein |
           chr3:9504846-9506703 REVERSE LENGTH=372
          Length = 372

 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 36/95 (37%), Positives = 55/95 (57%), Gaps = 4/95 (4%)

Query: 50  WTQQETREFIAIRAELERDFTASKRNKTLWEVVSSKMRERGFRRSPEQCKCKWKNLVNRY 109
           W Q ETR  I++R E++  F  SK NK LWE +S KMRE+GF RSP  C  KW+N++  +
Sbjct: 55  WAQDETRTLISLRREMDNLFNTSKSNKHLWEQISKKMREKGFDRSPSMCTDKWRNILKEF 114

Query: 110 -KGKETSDPE---HGKQCPFFEELHAVFTQRAQNM 140
            K K+  D        +  ++ E+  +F +R + +
Sbjct: 115 KKAKQHEDKATSGGSTKMSYYNEIEDIFRERKKKV 149


>AT1G76890.2 | Symbols: GT2, AT-GT2 | Duplicated homeodomain-like
           superfamily protein | chr1:28873211-28875203 REVERSE
           LENGTH=575
          Length = 575

 Score = 68.6 bits (166), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 36/97 (37%), Positives = 56/97 (57%), Gaps = 5/97 (5%)

Query: 44  GPSQPQWTQQETREFIAIRAELERDFTASKRNKTLWEVVSSKMRERGFRRSPEQCKCKWK 103
            PS  +W + E    I IR  LE ++  +     LWE +S+ MR  G+ RS ++CK KW+
Sbjct: 392 SPSSSRWPKTEVEALIRIRKNLEANYQENGTKGPLWEEISAGMRRLGYNRSAKRCKEKWE 451

Query: 104 NLVNRY--KGKETSD--PEHGKQCPFFEELHAVFTQR 136
           N +N+Y  K KE++   P   K CP+F +L A++ +R
Sbjct: 452 N-INKYFKKVKESNKKRPLDSKTCPYFHQLEALYNER 487



 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 51/88 (57%), Gaps = 2/88 (2%)

Query: 49  QWTQQETREFIAIRAELERDFTASKRNKTLWEVVSSKMRERGFRRSPEQCKCKWKNLVNR 108
           +W + ET   + IR+E+++ F  S     LWE +S KM E G++RS ++CK K++N+   
Sbjct: 41  RWPRPETLALLRIRSEMDKAFRDSTLKAPLWEEISRKMMELGYKRSSKKCKEKFENVYKY 100

Query: 109 YK-GKET-SDPEHGKQCPFFEELHAVFT 134
           +K  KE  +    GK   FFEEL A  T
Sbjct: 101 HKRTKEGRTGKSEGKTYRFFEELEAFET 128


>AT1G76880.1 | Symbols:  | Duplicated homeodomain-like superfamily
           protein | chr1:28865594-28867931 FORWARD LENGTH=603
          Length = 603

 Score = 64.7 bits (156), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 55/95 (57%), Gaps = 5/95 (5%)

Query: 46  SQPQWTQQETREFIAIRAELERDFTASKRNKTLWEVVSSKMRERGFRRSPEQCKCKWKNL 105
           S  +W + E    I +R  L+  +  +     LWE +S+ MR  GF R+ ++CK KW+N 
Sbjct: 405 SSSRWPKVEIEALIKLRTNLDSKYQENGPKGPLWEEISAGMRRLGFNRNSKRCKEKWEN- 463

Query: 106 VNRY--KGKETSD--PEHGKQCPFFEELHAVFTQR 136
           +N+Y  K KE++   PE  K CP+F +L A++ +R
Sbjct: 464 INKYFKKVKESNKKRPEDSKTCPYFHQLDALYRER 498



 Score = 51.6 bits (122), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 56/102 (54%), Gaps = 2/102 (1%)

Query: 42  ERGPSQPQWTQQETREFIAIRAELERDFTASKRNKTLWEVVSSKMRERGFRRSPEQCKCK 101
           +RG    +W +QET   + IR+++   F  +     LWE VS KM E G+ R+ ++CK K
Sbjct: 54  DRGFGGNRWPRQETLALLKIRSDMGIAFRDASVKGPLWEEVSRKMAEHGYIRNAKKCKEK 113

Query: 102 WKNLVNRYK-GKET-SDPEHGKQCPFFEELHAVFTQRAQNMQ 141
           ++N+   +K  KE  +    GK   FF++L A+ +Q   ++ 
Sbjct: 114 FENVYKYHKRTKEGRTGKSEGKTYRFFDQLEALESQSTTSLH 155


>AT5G63420.1 | Symbols: emb2746 | RNA-metabolising
           metallo-beta-lactamase family protein |
           chr5:25400515-25405807 FORWARD LENGTH=911
          Length = 911

 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 1/87 (1%)

Query: 49  QWTQQETREFIAIRAELERDFTASKRNKTLWEVVSSKMRERGFRRSPEQCKCKWKNLVNR 108
           +W  +E ++ I +R EL   F   K    LWE +SS +   G  RSP QCK  W +L+ +
Sbjct: 820 KWKPEEIKKVIRMRGELHSRFQVVKGRMALWEEISSNLSAEGINRSPGQCKSLWASLIQK 879

Query: 109 YKGKETSDPEHGKQCPFFEELHAVFTQ 135
           Y+ +  +D       P FE+++ + ++
Sbjct: 880 YE-ESKADERSKTSWPHFEDMNNILSE 905


>AT1G33240.1 | Symbols: AT-GTL1, AT-GTL2, GTL1 | GT-2-like 1 |
           chr1:12051859-12054320 REVERSE LENGTH=669
          Length = 669

 Score = 58.2 bits (139), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 51/87 (58%), Gaps = 2/87 (2%)

Query: 50  WTQQETREFIAIRAELERDFTASKRNKTLWEVVSSKMRERGFRRSPEQCKCKWKNLVNRY 109
           W ++ET   + IR++++  F  +     LWE VS K+ E G++RS ++CK K++N+   Y
Sbjct: 63  WPREETLALLRIRSDMDSTFRDATLKAPLWEHVSRKLLELGYKRSSKKCKEKFENVQKYY 122

Query: 110 K-GKETSDPEH-GKQCPFFEELHAVFT 134
           K  KET    H GK   FF +L A+ T
Sbjct: 123 KRTKETRGGRHDGKAYKFFSQLEALNT 149



 Score = 57.8 bits (138), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 47/87 (54%), Gaps = 3/87 (3%)

Query: 50  WTQQETREFIAIRAELERDFTASKRNKTLWEVVSSKMRERGFRRSPEQCKCKWKNLVNRY 109
           W + E    I +R+ +E  +  +     LWE +S+ M+  G+ R+ ++CK KW+N+   Y
Sbjct: 436 WPKAEILALINLRSGMEPRYQDNVPKGLLWEEISTSMKRMGYNRNAKRCKEKWENINKYY 495

Query: 110 KGKETSD---PEHGKQCPFFEELHAVF 133
           K  + S+   P+  K CP+F  L  ++
Sbjct: 496 KKVKESNKKRPQDAKTCPYFHRLDLLY 522


>AT5G28300.1 | Symbols:  | Duplicated homeodomain-like superfamily
           protein | chr5:10292789-10295101 REVERSE LENGTH=619
          Length = 619

 Score = 57.8 bits (138), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 34/112 (30%), Positives = 58/112 (51%), Gaps = 15/112 (13%)

Query: 38  PVREERGPSQPQWTQQETREFIAIRAEL----------ERDFTASKRNKTLWEVVSSKMR 87
           P  +++     +W + E    I IR  +          E   + S +   LWE +S KM 
Sbjct: 448 PKSDDKSDLGKRWPKDEVLALINIRRSISNMNDDDHKDENSLSTSSKAVPLWERISKKML 507

Query: 88  ERGFRRSPEQCKCKWKNLVNRY--KGKETSD--PEHGKQCPFFEELHAVFTQ 135
           E G++RS ++CK KW+N +N+Y  K K+ +   P   + CP+F +L A+++Q
Sbjct: 508 EIGYKRSAKRCKEKWEN-INKYFRKTKDVNKKRPLDSRTCPYFHQLTALYSQ 558


>AT5G47660.1 | Symbols:  | Homeodomain-like superfamily protein |
           chr5:19313008-19314636 FORWARD LENGTH=398
          Length = 398

 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 54/89 (60%), Gaps = 7/89 (7%)

Query: 49  QWTQQETREFIAIRAELERDFTASKRNKTLWEVVSSKMRERGFRRSPEQCKCKWKNLVNR 108
           +W Q+E +  I+ R+++E     +K    +W+ +S++M+ERG+ RS ++CK KW+N+ N+
Sbjct: 303 RWPQEEVQALISSRSDVEEKTGINK--GAIWDEISARMKERGYERSAKKCKEKWENM-NK 359

Query: 109 YKGKET----SDPEHGKQCPFFEELHAVF 133
           Y  + T      PEH K   +FE+L   +
Sbjct: 360 YYRRVTEGGQKQPEHSKTRSYFEKLGNFY 388


>AT5G03680.1 | Symbols: PTL | Duplicated homeodomain-like
           superfamily protein | chr5:957858-960760 FORWARD
           LENGTH=591
          Length = 591

 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 50/87 (57%), Gaps = 3/87 (3%)

Query: 50  WTQQETREFIAIRAELERDFTASKRNKTLWEVVSSKM-RERGFRRSPEQCKCKWKNLVNR 108
           W +QET   + IR+ L+  F  + +   LW+ VS  M  E G++RS ++C+ K++NL   
Sbjct: 120 WPRQETLTLLEIRSRLDHKFKEANQKGPLWDEVSRIMSEEHGYQRSGKKCREKFENLYKY 179

Query: 109 Y-KGKET-SDPEHGKQCPFFEELHAVF 133
           Y K KE  +  + GK   FF +L A++
Sbjct: 180 YRKTKEGKAGRQDGKHYRFFRQLEALY 206


>AT3G10000.1 | Symbols: EDA31 | Homeodomain-like superfamily protein
           | chr3:3076874-3078907 FORWARD LENGTH=481
          Length = 481

 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/124 (27%), Positives = 61/124 (49%), Gaps = 6/124 (4%)

Query: 15  GMVMPSMVNPSTSSMMSGEMSVAPVREERGPSQPQWTQQETREFIAIRAELERDFTASKR 74
           G+ +    + + +++ SG           G    +W +QET   + +R+ L+  F  + +
Sbjct: 54  GLTVAGNNSNTITTIQSGGCVGGFSGFTDGGGTGRWPRQETLMLLEVRSRLDHKFKEANQ 113

Query: 75  NKTLWEVVSSKM-RERGFRRSPEQCKCKWKNLVNRYK----GKETSDPEHGKQCPFFEEL 129
              LW+ VS  M  E G+ RS ++C+ K++NL   YK    GK +   + GK   FF +L
Sbjct: 114 KGPLWDEVSRIMSEEHGYTRSGKKCREKFENLYKYYKKTKEGK-SGRRQDGKNYRFFRQL 172

Query: 130 HAVF 133
            A++
Sbjct: 173 EAIY 176