Miyakogusa Predicted Gene

Lj2g3v1549750.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1549750.1 tr|Q9LVV0|Q9LVV0_ARATH Emb|CAB82814.1
OS=Arabidopsis thaliana GN=At5g53020 PE=4
SV=1,36.51,1e-18,coiled-coil,NULL; seg,NULL; TRANSCRIPTION FACTOR
X1-LIKE,NULL; RIBONUCLEASE P PROTEIN SUBUNIT P38-RE,CUFF.37394.1
         (417 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G45900.1 | Symbols:  | Ribonuclease P protein subunit P38-rel...   255   3e-68
AT5G53020.1 | Symbols:  | Ribonuclease P protein subunit P38-rel...    84   2e-16

>AT3G45900.1 | Symbols:  | Ribonuclease P protein subunit
           P38-related | chr3:16874566-16875984 REVERSE LENGTH=389
          Length = 389

 Score =  255 bits (652), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 131/203 (64%), Positives = 156/203 (76%), Gaps = 3/203 (1%)

Query: 217 WQDVQHESLESMYSAKQFVARRESPWKVDGDSAGVSSXXXXXXXXXXXXXXFAK-SDLSK 275
           +QD+Q+ESLES+Y  K FV RRESPWK+D +  GVS+                + SD+SK
Sbjct: 188 FQDLQYESLESVYRMKHFVPRRESPWKIDSEGTGVSAKLRLLEEELLNLEKVCRPSDISK 247

Query: 276 VAPLIKKQAKRYQALSEKIDDLCRRI-ASDPSEPSLSSEFRTQTQTEFLLEAFRLQQGAS 334
           V  L+KKQAKRYQALS KIDDLCRR+ +SDP + +L  EFRTQ Q EFLLE FRLQQ AS
Sbjct: 248 VPSLLKKQAKRYQALSGKIDDLCRRMQSSDPCDATLGPEFRTQRQNEFLLECFRLQQRAS 307

Query: 335 ETGQKLMALQTEIGKSLYRDELKSEATPTTRRSLDSIRNNFKDLQRNLEIWLARIIGDLE 394
           ETGQKL++LQTEI +S   D+L S+A   T RSLD I+NN K++QRNLEIWLARIIGDLE
Sbjct: 308 ETGQKLVSLQTEITRSNQGDQL-SQAKMNTGRSLDLIKNNLKEVQRNLEIWLARIIGDLE 366

Query: 395 GILARDGASRVREYYISRYPFVQ 417
           GILARDGASRVRE+Y++RYPFVQ
Sbjct: 367 GILARDGASRVREFYVARYPFVQ 389



 Score = 83.6 bits (205), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 47/82 (57%), Positives = 59/82 (71%), Gaps = 11/82 (13%)

Query: 16  LLRSYIGLSFSVFLALLPTN-------LRTKARDLTR----AEEELSQMRSRRREDSKAN 64
           L +S++ LSFSV LA LP +       L ++  +L R    AEE++ QM+SRR EDSKAN
Sbjct: 29  LAKSFLVLSFSVMLAHLPNDAISLVPRLTSQVTELKRRLATAEEQVRQMKSRRVEDSKAN 88

Query: 65  ARVAEIFASHRNAWRDEEKRLL 86
           ARV EIFASHRNAW++EEKRLL
Sbjct: 89  ARVVEIFASHRNAWQEEEKRLL 110


>AT5G53020.1 | Symbols:  | Ribonuclease P protein subunit
           P38-related | chr5:21499899-21502235 FORWARD LENGTH=720
          Length = 720

 Score = 83.6 bits (205), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/132 (39%), Positives = 82/132 (62%), Gaps = 12/132 (9%)

Query: 282 KQAKRYQALSEKIDDLCRRI-ASDPSEPSLSSEFRTQTQT---EFLLEAFRLQQGASETG 337
           KQ  RYQ+L EKIDDLC+R+  +DP + S  +    + +T    FL E F+LQ+    TG
Sbjct: 575 KQVTRYQSLQEKIDDLCKRMHVNDPQKISGKNRANGEAKTSLEHFLDETFQLQRYIVATG 634

Query: 338 QKLMALQTEIGKSLYR---DELKSEATPTT-----RRSLDSIRNNFKDLQRNLEIWLARI 389
           QKLM +Q++I         D + +E++ ++      R  ++I++ F+++QR LE+ ++R 
Sbjct: 635 QKLMEIQSKIASGFVEFLVDLITTESSSSSSSFDPERFAENIKSLFQEVQRGLEVRISRC 694

Query: 390 IGDLEGILARDG 401
           IGDLEG LAR+G
Sbjct: 695 IGDLEGTLAREG 706