Miyakogusa Predicted Gene

Lj2g3v1549640.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1549640.1 Non Chatacterized Hit- tr|I3RZV1|I3RZV1_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,99.21,0,seg,NULL;
RNA_POL_K_14KD,DNA-directed RNA polymerase, 14-18kDa subunit,
conserved site; DNA-DIRECTED,CUFF.37392.1
         (127 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G51940.1 | Symbols: NRPB6A, NRPD6A, NRPE6A | RNA polymerase R...   148   9e-37
AT2G04630.1 | Symbols: NRPB6B, NRPE6B | RNA polymerase Rpb6 | ch...   145   8e-36

>AT5G51940.1 | Symbols: NRPB6A, NRPD6A, NRPE6A | RNA polymerase Rpb6
           | chr5:21104679-21105796 FORWARD LENGTH=144
          Length = 144

 Score =  148 bits (373), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 80/128 (62%), Positives = 87/128 (67%), Gaps = 2/128 (1%)

Query: 1   MADEDYDDVD-MGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAQPVQRPR 59
           MADEDY+DVD +GY                                       +PVQRPR
Sbjct: 1   MADEDYNDVDDLGYEDEPAEPEIEEGVEEDVEMKENDDVNGEPIEAEDKVE-TEPVQRPR 59

Query: 60  KTSKYMTKYERARILGTRALQISMNAPVMVELAGETDPLEIAMKELRERKIPFTIRRYLP 119
           KTSK+MTKYERARILGTRALQISMNAPVMVEL GETDPLEIAMKELR+RKIPFTIRRYLP
Sbjct: 60  KTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRQRKIPFTIRRYLP 119

Query: 120 DGSYEDWG 127
           DGS+E+WG
Sbjct: 120 DGSFEEWG 127


>AT2G04630.1 | Symbols: NRPB6B, NRPE6B | RNA polymerase Rpb6 |
           chr2:1619168-1620246 REVERSE LENGTH=144
          Length = 144

 Score =  145 bits (366), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 69/76 (90%), Positives = 73/76 (96%)

Query: 52  AQPVQRPRKTSKYMTKYERARILGTRALQISMNAPVMVELAGETDPLEIAMKELRERKIP 111
            +PVQRPRKTSK+MTKYERARILGTRALQISMNAPVMVEL GETDPLEIAMKELR+RKIP
Sbjct: 52  TEPVQRPRKTSKFMTKYERARILGTRALQISMNAPVMVELEGETDPLEIAMKELRQRKIP 111

Query: 112 FTIRRYLPDGSYEDWG 127
           FTIRRYLPD SYE+WG
Sbjct: 112 FTIRRYLPDMSYEEWG 127