Miyakogusa Predicted Gene

Lj2g3v1549620.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1549620.1 tr|I3RZX6|I3RZX6_LOTJA ATP-dependent Clp protease
proteolytic subunit OS=Lotus japonicus PE=2 SV=1,98.83,0,ATP-DEPENDENT
CLP PROTEASE PROTEOLYTIC SUBUNIT,NULL; ATP-DEPENDENT CLP PROTEASE
PROTEOLYTIC SUBUNIT,,CUFF.37398.1
         (171 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G45390.1 | Symbols: CLPP4, NCLPP4 | CLP protease P4 | chr5:18...   159   1e-39
AT1G66670.1 | Symbols: CLPP3, NCLPP3 | CLP protease proteolytic ...   107   3e-24
AT1G02560.1 | Symbols: CLPP5, NCLPP5, NCLPP1 | nuclear encoded C...    82   2e-16
AT5G23140.1 | Symbols: CLPP2, NCLPP7 | nuclear-encoded CLP prote...    77   7e-15
ATCG00670.1 | Symbols: CLPP1, PCLPP | plastid-encoded CLP P | ch...    75   3e-14
AT1G11750.2 | Symbols: CLPP6 | CLP protease proteolytic subunit ...    70   6e-13
AT1G11750.1 | Symbols: CLPP6, NCLPP1, NCLPP6 | CLP protease prot...    70   7e-13
AT1G12410.1 | Symbols: CLPR2, NCLPP2, CLP2 | CLP protease proteo...    68   4e-12
AT1G49970.1 | Symbols: CLPR1, NCLPP5, SVR2 | CLP protease proteo...    57   8e-09
AT4G17040.1 | Symbols: CLPR4 | CLP protease R subunit 4 | chr4:9...    49   1e-06
AT1G09130.3 | Symbols:  | ATP-dependent caseinolytic (Clp) prote...    48   3e-06
AT1G09130.2 | Symbols:  | ATP-dependent caseinolytic (Clp) prote...    48   3e-06
AT1G09130.1 | Symbols:  | ATP-dependent caseinolytic (Clp) prote...    48   3e-06

>AT5G45390.1 | Symbols: CLPP4, NCLPP4 | CLP protease P4 |
           chr5:18396351-18397586 FORWARD LENGTH=292
          Length = 292

 Score =  159 bits (401), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 82/96 (85%), Positives = 87/96 (90%), Gaps = 2/96 (2%)

Query: 76  TFQMSSPQTPATAIRGAETDAMGLLLRERIVFLGSGIDDFVADAIMSQLLLLDAQDPSKD 135
           + +MS  QT  +AIRGAE+D MGLLLRERIVFLGS IDDFVADAIMSQLLLLDA+DP KD
Sbjct: 62  SIEMS--QTQESAIRGAESDVMGLLLRERIVFLGSSIDDFVADAIMSQLLLLDAKDPKKD 119

Query: 136 IKLFINSPGGSLSATMAIYDAVQLVRADVSTIALGI 171
           IKLFINSPGGSLSATMAIYD VQLVRADVSTIALGI
Sbjct: 120 IKLFINSPGGSLSATMAIYDVVQLVRADVSTIALGI 155


>AT1G66670.1 | Symbols: CLPP3, NCLPP3 | CLP protease proteolytic
           subunit 3 | chr1:24863995-24865646 REVERSE LENGTH=309
          Length = 309

 Score =  107 bits (268), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 57/119 (47%), Positives = 80/119 (67%), Gaps = 7/119 (5%)

Query: 54  LTASPNHSKNANFEPESLKPRITFQMSS-PQTPATAIRGAETDAMGLLLRERIVFLGSGI 112
           L+  P  + ++N++  S      F + S  Q+P+      E D   +LLR+RIVFLGS +
Sbjct: 49  LSKPPRQTLSSNWDVSS------FSIDSVAQSPSRLPSFEELDTTNMLLRQRIVFLGSQV 102

Query: 113 DDFVADAIMSQLLLLDAQDPSKDIKLFINSPGGSLSATMAIYDAVQLVRADVSTIALGI 171
           DD  AD ++SQLLLLDA+D  +DI LFINSPGGS++A M IYDA++  +ADVST+ LG+
Sbjct: 103 DDMTADLVISQLLLLDAEDSERDITLFINSPGGSITAGMGIYDAMKQCKADVSTVCLGL 161


>AT1G02560.1 | Symbols: CLPP5, NCLPP5, NCLPP1 | nuclear encoded CLP
           protease 5 | chr1:538000-539805 FORWARD LENGTH=298
          Length = 298

 Score = 81.6 bits (200), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 36/72 (50%), Positives = 56/72 (77%)

Query: 100 LLRERIVFLGSGIDDFVADAIMSQLLLLDAQDPSKDIKLFINSPGGSLSATMAIYDAVQL 159
           L + RI+  G  +DD +A+ I++QLL LDA DP+KDI +++NSPGGS++A MAI+D ++ 
Sbjct: 119 LFQYRIIRCGGAVDDDMANIIVAQLLYLDAVDPTKDIVMYVNSPGGSVTAGMAIFDTMRH 178

Query: 160 VRADVSTIALGI 171
           +R DVST+ +G+
Sbjct: 179 IRPDVSTVCVGL 190


>AT5G23140.1 | Symbols: CLPP2, NCLPP7 | nuclear-encoded CLP protease
           P7 | chr5:7783811-7784826 FORWARD LENGTH=241
          Length = 241

 Score = 76.6 bits (187), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 33/76 (43%), Positives = 55/76 (72%)

Query: 95  DAMGLLLRERIVFLGSGIDDFVADAIMSQLLLLDAQDPSKDIKLFINSPGGSLSATMAIY 154
           D    LL+ERI+ +   I+D  +  +++QLL L++++PSK I +++NSPGG ++A +AIY
Sbjct: 48  DIFSRLLKERIICINGPINDDTSHVVVAQLLYLESENPSKPIHMYLNSPGGHVTAGLAIY 107

Query: 155 DAVQLVRADVSTIALG 170
           D +Q +R+ +STI LG
Sbjct: 108 DTMQYIRSPISTICLG 123


>ATCG00670.1 | Symbols: CLPP1, PCLPP | plastid-encoded CLP P |
           chrC:69910-71882 REVERSE LENGTH=196
          Length = 196

 Score = 74.7 bits (182), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 34/78 (43%), Positives = 51/78 (65%)

Query: 94  TDAMGLLLRERIVFLGSGIDDFVADAIMSQLLLLDAQDPSKDIKLFINSPGGSLSATMAI 153
            D    L RER+ FLG  +D  +++ ++S ++ L  +  +KD+ LFINSPGG + + MAI
Sbjct: 21  VDIYNRLYRERLFFLGQEVDTEISNQLISLMIYLSIEKDTKDLYLFINSPGGWVISGMAI 80

Query: 154 YDAVQLVRADVSTIALGI 171
           YD +Q VR DV TI +G+
Sbjct: 81  YDTMQFVRPDVQTICMGL 98


>AT1G11750.2 | Symbols: CLPP6 | CLP protease proteolytic subunit 6 |
           chr1:3967609-3969535 FORWARD LENGTH=289
          Length = 289

 Score = 70.5 bits (171), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 52/90 (57%)

Query: 82  PQTPATAIRGAETDAMGLLLRERIVFLGSGIDDFVADAIMSQLLLLDAQDPSKDIKLFIN 141
           P  P+    G   D   +L R RI+F+G  I+  VA  ++SQL+ L + D   DI +++N
Sbjct: 101 PVMPSVMTPGGPLDLSSVLFRNRIIFIGQPINAQVAQRVISQLVTLASIDDKSDILMYLN 160

Query: 142 SPGGSLSATMAIYDAVQLVRADVSTIALGI 171
            PGGS  + +AIYD +  ++  V T+A G+
Sbjct: 161 CPGGSTYSVLAIYDCMSWIKPKVGTVAFGV 190


>AT1G11750.1 | Symbols: CLPP6, NCLPP1, NCLPP6 | CLP protease
           proteolytic subunit 6 | chr1:3967609-3969535 FORWARD
           LENGTH=271
          Length = 271

 Score = 70.1 bits (170), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 52/90 (57%)

Query: 82  PQTPATAIRGAETDAMGLLLRERIVFLGSGIDDFVADAIMSQLLLLDAQDPSKDIKLFIN 141
           P  P+    G   D   +L R RI+F+G  I+  VA  ++SQL+ L + D   DI +++N
Sbjct: 83  PVMPSVMTPGGPLDLSSVLFRNRIIFIGQPINAQVAQRVISQLVTLASIDDKSDILMYLN 142

Query: 142 SPGGSLSATMAIYDAVQLVRADVSTIALGI 171
            PGGS  + +AIYD +  ++  V T+A G+
Sbjct: 143 CPGGSTYSVLAIYDCMSWIKPKVGTVAFGV 172


>AT1G12410.1 | Symbols: CLPR2, NCLPP2, CLP2 | CLP protease
           proteolytic subunit 2 | chr1:4223099-4224954 FORWARD
           LENGTH=279
          Length = 279

 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 55/94 (58%), Gaps = 6/94 (6%)

Query: 84  TPATAIRGAE------TDAMGLLLRERIVFLGSGIDDFVADAIMSQLLLLDAQDPSKDIK 137
           TP    R  E       D    L RER++F+G  ID+  ++ I++ +L LD  D S+ I 
Sbjct: 72  TPRVPYRNREEGTWQWVDIWNALYRERVIFIGQNIDEEFSNQILATMLYLDTLDDSRRIY 131

Query: 138 LFINSPGGSLSATMAIYDAVQLVRADVSTIALGI 171
           +++N PGG L+ ++AIYD ++ +++ V T  +G+
Sbjct: 132 MYLNGPGGDLTPSLAIYDTMKSLKSPVGTHCVGL 165


>AT1G49970.1 | Symbols: CLPR1, NCLPP5, SVR2 | CLP protease
           proteolytic subunit 1 | chr1:18501936-18504462 REVERSE
           LENGTH=387
          Length = 387

 Score = 56.6 bits (135), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 48/91 (52%), Gaps = 9/91 (9%)

Query: 90  RGAETDAMGLLLRERIVFLGSGIDDFVADAIMSQLLLLDAQDPSKDIKLFINSPG----- 144
           R A  D   LLL  RI +LG  I   V + +++Q + LD  +P+K I L+INSPG     
Sbjct: 166 RTAPPDLPSLLLDARICYLGMPIVPAVTELLVAQFMWLDYDNPTKPIYLYINSPGTQNEK 225

Query: 145 ----GSLSATMAIYDAVQLVRADVSTIALGI 171
               GS +   AI D +   ++DV TI  G+
Sbjct: 226 METVGSETEAYAIADTISYCKSDVYTINCGM 256


>AT4G17040.1 | Symbols: CLPR4 | CLP protease R subunit 4 |
           chr4:9586740-9589297 REVERSE LENGTH=305
          Length = 305

 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/125 (28%), Positives = 55/125 (44%), Gaps = 19/125 (15%)

Query: 64  ANFEPESLKPRITFQMSSPQ----------TPATAIRGAETDAMGLLLRERIVFLGSGID 113
           A    ESL P + F  S P+          +  +A      D    L + RIV+LG  + 
Sbjct: 65  AKLRAESLNP-LNFSSSKPKRGVVTMVIPFSKGSAHEQPPPDLASYLFKNRIVYLGMSLV 123

Query: 114 DFVADAIMSQLLLLDAQDPSKDIKLFINSPG--------GSLSATMAIYDAVQLVRADVS 165
             V + I+++ L L  +D  K I L+INS G        G  +   AIYD +  V+  + 
Sbjct: 124 PSVTELILAEFLYLQYEDEEKPIYLYINSTGTTKNGEKLGYDTEAFAIYDVMGYVKPPIF 183

Query: 166 TIALG 170
           T+ +G
Sbjct: 184 TLCVG 188


>AT1G09130.3 | Symbols:  | ATP-dependent caseinolytic (Clp)
           protease/crotonase family protein | chr1:2939731-2942217
           REVERSE LENGTH=370
          Length = 370

 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 55/112 (49%), Gaps = 16/112 (14%)

Query: 68  PESLKPRITFQMSSPQTPATAIRGAETDAMGLLLRERIVFLGSGIDDFVADAIMSQLLLL 127
           P  ++  + +    P+TP         D   +LL  RIV++G  +   V + ++++L+ L
Sbjct: 101 PAQVERSVAYNEHRPRTPPP-------DLPSMLLDGRIVYIGMPLVPAVTELVVAELMYL 153

Query: 128 DAQDPSKDIKLFINSPG---------GSLSATMAIYDAVQLVRADVSTIALG 170
              DP + I ++INS G         G  S   AIYD++  ++ +V T+ +G
Sbjct: 154 QWLDPKEPIYIYINSTGTTRDDGETVGMESEGFAIYDSLMQLKNEVHTVCVG 205


>AT1G09130.2 | Symbols:  | ATP-dependent caseinolytic (Clp)
           protease/crotonase family protein | chr1:2940063-2942217
           REVERSE LENGTH=330
          Length = 330

 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 55/112 (49%), Gaps = 16/112 (14%)

Query: 68  PESLKPRITFQMSSPQTPATAIRGAETDAMGLLLRERIVFLGSGIDDFVADAIMSQLLLL 127
           P  ++  + +    P+TP         D   +LL  RIV++G  +   V + ++++L+ L
Sbjct: 101 PAQVERSVAYNEHRPRTPPP-------DLPSMLLDGRIVYIGMPLVPAVTELVVAELMYL 153

Query: 128 DAQDPSKDIKLFINSPG---------GSLSATMAIYDAVQLVRADVSTIALG 170
              DP + I ++INS G         G  S   AIYD++  ++ +V T+ +G
Sbjct: 154 QWLDPKEPIYIYINSTGTTRDDGETVGMESEGFAIYDSLMQLKNEVHTVCVG 205


>AT1G09130.1 | Symbols:  | ATP-dependent caseinolytic (Clp)
           protease/crotonase family protein | chr1:2940063-2942217
           REVERSE LENGTH=330
          Length = 330

 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 55/112 (49%), Gaps = 16/112 (14%)

Query: 68  PESLKPRITFQMSSPQTPATAIRGAETDAMGLLLRERIVFLGSGIDDFVADAIMSQLLLL 127
           P  ++  + +    P+TP         D   +LL  RIV++G  +   V + ++++L+ L
Sbjct: 101 PAQVERSVAYNEHRPRTPPP-------DLPSMLLDGRIVYIGMPLVPAVTELVVAELMYL 153

Query: 128 DAQDPSKDIKLFINSPG---------GSLSATMAIYDAVQLVRADVSTIALG 170
              DP + I ++INS G         G  S   AIYD++  ++ +V T+ +G
Sbjct: 154 QWLDPKEPIYIYINSTGTTRDDGETVGMESEGFAIYDSLMQLKNEVHTVCVG 205