Miyakogusa Predicted Gene

Lj2g3v1549590.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1549590.1 tr|D7MPV6|D7MPV6_ARALL Predicted protein
OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_683248
PE,36.59,0.000000000002,seg,NULL,CUFF.37382.1
         (301 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G19140.1 | Symbols:  | unknown protein; Has 30201 Blast hits ...   254   4e-68

>AT4G19140.1 | Symbols:  | unknown protein; Has 30201 Blast hits to
           17322 proteins in 780 species: Archae - 12; Bacteria -
           1396; Metazoa - 17338; Fungi - 3422; Plants - 5037;
           Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
           BLink). | chr4:10469830-10471275 FORWARD LENGTH=303
          Length = 303

 Score =  254 bits (650), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 126/239 (52%), Positives = 167/239 (69%), Gaps = 14/239 (5%)

Query: 60  LPSQCKIVSTGVDIRSSKVCELGLLNYKAKDVFHHFERSKFRCRYDYYWASVFKVEYVDR 119
           L S+CKIVS+ VD+RSSKVC +GLLN KA+ VF+ FER KFRCRYDYYWASVFKVEY D 
Sbjct: 67  LHSRCKIVSSSVDLRSSKVCGIGLLNVKAQHVFYPFERDKFRCRYDYYWASVFKVEYKDN 126

Query: 120 FSGQTQVAFAEAPKEALPPYCRPNFGAAWLTQYKYKVNETYDCWYTSGISKVHLYQDNLF 179
             GQT++AF+EAP EALPP CRPNFGAA LT+  +KVNETYDCWYT GI K+ LY+D+ F
Sbjct: 127 LMGQTRLAFSEAPNEALPPECRPNFGAALLTKDNFKVNETYDCWYTLGIPKIKLYRDSFF 186

Query: 180 GCHADEQSTIEKIKQKAIMAMEMVNSWFSDKRRTNNWRWGAIAGLVTGFSTSLISITFIG 239
           GC AD+ S  +  KQ +I+  +++ SW + +     W++  IAG+V+GF+TS+I++  I 
Sbjct: 187 GCQADDLSFTDIAKQYSIVISKLLQSWLNGESTPKYWKYDVIAGIVSGFATSIITVFIIR 246

Query: 240 FLQ-------QLLSSVYQSFKTWVFPRRVNAVL-IRRACFLLAYLSFVAWLAIEYGKRL 290
            L+       Q   SV + F       +VN ++ ++RAC LL Y S + W+A +Y K L
Sbjct: 247 ILRHAKSWFPQACCSVKRQFS------KVNILVQVKRACLLLVYFSVLGWMATQYLKIL 299