Miyakogusa Predicted Gene

Lj2g3v1548470.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1548470.1 tr|A9TFZ6|A9TFZ6_PHYPA Predicted protein
(Fragment) OS=Physcomitrella patens subsp. patens
GN=PHYPAD,45.22,2e-18,no description,Nucleic acid-binding, OB-fold;
seg,NULL; Rep-A_N,Replication factor-A protein 1, N-te,CUFF.37375.1
         (362 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G45400.1 | Symbols: RPA70C, ATRPA70C | Replication factor-A p...   170   1e-42
AT4G19130.1 | Symbols:  | Replication factor-A protein 1-related...   142   5e-34
AT2G06510.2 | Symbols: ATRPA1A, RPA1A, RPA70A, ATRPA70A | replic...    89   5e-18
AT2G06510.1 | Symbols: ATRPA1A, RPA1A, RPA70A, ATRPA70A | replic...    89   5e-18
AT5G08020.1 | Symbols: ATRPA70B, RPA70B | RPA70-kDa subunit B | ...    61   1e-09
AT5G61000.1 | Symbols: RPA70D, ATRPA70D | Replication factor-A p...    60   3e-09

>AT5G45400.1 | Symbols: RPA70C, ATRPA70C | Replication factor-A
           protein 1-related | chr5:18398990-18401644 FORWARD
           LENGTH=853
          Length = 853

 Score =  170 bits (431), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 121/359 (33%), Positives = 173/359 (48%), Gaps = 63/359 (17%)

Query: 1   MAVNLTEGAIMAMCTDGVTSD-QLQPVLQIIDLKHVQT---QQNNATKRYRVVVSDGFLY 56
           MAV+LTEG +M M    VTS+  + PVLQ+ +LK +Q+   Q   ++ RY+ ++SDG   
Sbjct: 1   MAVSLTEGVVMKMLNGEVTSETDMMPVLQVTELKLIQSKLHQNQESSNRYKFLLSDGTDL 60

Query: 57  QQGMLATQRNELVDSGKLQKGSIVRLTQFACNHVGDRMXXXXXXXXXXMDKCDLIGEPKP 116
             GML T  N LV+ G +Q GS++RLT + CN +  R           ++KC++IG PK 
Sbjct: 61  AAGMLNTSLNSLVNQGTIQLGSVIRLTHYICNLIQTRRIVVIMQLEVIVEKCNIIGNPKE 120

Query: 117 ------APRNGA---------------RAQSATGQSGVTSGNSQP--FNNSANAGGVTAR 153
                  P+ G                R+    G+ GV++ + QP   +NS++AG     
Sbjct: 121 PGHSSINPQRGGVNTQSNGGSEQQQARRSDVNGGRYGVSANSPQPQVVHNSSDAGRYCVS 180

Query: 154 TSPVGPSLDHPK---------VNPPATNVYSSSSDPXXXXXXXXXXXXXXXXXXXXXXXR 204
            +   P + H            N P   V  +S D                        R
Sbjct: 181 ANSPQPQVVHSSSDAGRYGVSANSPQRQVVHNSPD----------------------AGR 218

Query: 205 FGASNAPPAYPKVESGASLPRSTTHGGSYGDQNTGFRNPQQYEASRPVPNS-YARTPQPM 263
           +G    P    +  +G+  P ++     Y   N G+   +Q +   P   + Y+R  Q  
Sbjct: 219 YGQ---PQVSQRYGTGSGYPETSPSTRPYVSSNAGYGGSRQDQPRAPTATTAYSRPVQSA 275

Query: 264 YR-QPSPMYTNRGPIGRNEAPPRIIPIAALNPYQNMWTIKARVTAKGELRAYHNARGEG 321
           Y+ Q  PMY NRGP+ RNEAPPRI PIAALNPYQ  WTIK RVT+K +LR ++N RGEG
Sbjct: 276 YQPQQPPMYVNRGPVARNEAPPRINPIAALNPYQGRWTIKVRVTSKADLRRFNNPRGEG 334


>AT4G19130.1 | Symbols:  | Replication factor-A protein 1-related |
           chr4:10466618-10469092 REVERSE LENGTH=784
          Length = 784

 Score =  142 bits (357), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 116/324 (35%), Positives = 153/324 (47%), Gaps = 64/324 (19%)

Query: 1   MAVNLTEGAIMAMCTDGVTSD-QLQPVLQIIDLKHVQTQQNNATKRYRVVVSDGFLYQQG 59
           M V+LT GAI  +    VT++  + PVLQ+ DLK +  QQ+   +R+R+V+SDG    QG
Sbjct: 1   MEVSLTAGAIGKIMNGEVTTEADMIPVLQVTDLKQIMAQQDPTRERFRMVLSDGTYLHQG 60

Query: 60  MLATQRNELVDSGKLQKGSIVRLTQFACNHVGDRMXXXXXXXXXXMDKCDLIGEPKPAPR 119
           ML T  N LV  G LQ GSIVRLT+F  + +  R               D+IG P P  +
Sbjct: 61  MLGTDLNNLVKEGTLQPGSIVRLTRFVGDVIKGRRIVIVPQLEVLKQISDIIGHPVPGGK 120

Query: 120 NGARAQSATGQSGVTSGNSQPFNNSANAGGVTARTSPVGPSLDHPKVNPPATNVYSSSSD 179
           +         Q G  SG    FN +   G    + + + P                    
Sbjct: 121 H-------NDQRGADSG--IKFNTTEQQGSGIRQVNNIEP-------------------- 151

Query: 180 PXXXXXXXXXXXXXXXXXXXXXXXRFGASNAPPAYPKVE-SGASLPRSTT-HGGSYGDQN 237
                                     G SNA  + P+V  +G+S+P STT    +Y + +
Sbjct: 152 --------------------------GRSNAAIS-PQVGGTGSSVPASTTPSTRAYSNPS 184

Query: 238 TGFRNPQQYEASRPVPNSYARTPQPMYRQPSPMYTNRGPIGRNEAPPRIIPIAALNPYQN 297
           +G    +Q  A  P P SY   PQP      PMY NRGP+ RNEAPP+IIP+ AL+PY  
Sbjct: 185 SGNGVTRQDYARDP-PTSYPHQPQPP----PPMYANRGPVARNEAPPKIIPVNALSPYSG 239

Query: 298 MWTIKARVTAKGELRAYHNARGEG 321
            WTIKARVT K  L+ Y N RGEG
Sbjct: 240 RWTIKARVTNKAALKQYSNPRGEG 263


>AT2G06510.2 | Symbols: ATRPA1A, RPA1A, RPA70A, ATRPA70A |
           replication protein A 1A | chr2:2585215-2587601 FORWARD
           LENGTH=617
          Length = 617

 Score = 89.0 bits (219), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 42/67 (62%), Positives = 51/67 (76%), Gaps = 1/67 (1%)

Query: 255 SYARTPQPMYRQPSPMYTNRGPIGRNEAPPRIIPIAALNPYQNMWTIKARVTAKGELRAY 314
           S+  + QP Y QP   Y N GPI +NEAP R+IPIAALNPYQ  W IKARVTAKG++R Y
Sbjct: 144 SFRPSVQPSY-QPPASYRNHGPIMKNEAPARVIPIAALNPYQGRWAIKARVTAKGDIRRY 202

Query: 315 HNARGEG 321
           +NA+G+G
Sbjct: 203 NNAKGDG 209



 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 51/104 (49%)

Query: 29  IIDLKHVQTQQNNATKRYRVVVSDGFLYQQGMLATQRNELVDSGKLQKGSIVRLTQFACN 88
           ++++K +   Q  + +RYR ++SDG   Q  M+A Q N+ V SG+ +KGSIV+L  + C+
Sbjct: 3   VLEIKMIGRSQERSQERYRFLISDGVSAQHAMVAVQLNDRVKSGQFEKGSIVQLIDYICS 62

Query: 89  HVGDRMXXXXXXXXXXMDKCDLIGEPKPAPRNGARAQSATGQSG 132
            V  R           + + + IG P         AQ     +G
Sbjct: 63  DVKGRKLIVVLNMETIVQQSETIGNPTIFGETDTEAQKTFSGTG 106


>AT2G06510.1 | Symbols: ATRPA1A, RPA1A, RPA70A, ATRPA70A |
           replication protein A 1A | chr2:2585215-2587601 FORWARD
           LENGTH=640
          Length = 640

 Score = 89.0 bits (219), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 42/67 (62%), Positives = 51/67 (76%), Gaps = 1/67 (1%)

Query: 255 SYARTPQPMYRQPSPMYTNRGPIGRNEAPPRIIPIAALNPYQNMWTIKARVTAKGELRAY 314
           S+  + QP Y QP   Y N GPI +NEAP R+IPIAALNPYQ  W IKARVTAKG++R Y
Sbjct: 167 SFRPSVQPSY-QPPASYRNHGPIMKNEAPARVIPIAALNPYQGRWAIKARVTAKGDIRRY 225

Query: 315 HNARGEG 321
           +NA+G+G
Sbjct: 226 NNAKGDG 232



 Score = 74.7 bits (182), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 67/132 (50%), Gaps = 3/132 (2%)

Query: 1   MAVNLTEGAIMAMCTDGVTSDQLQPVLQIIDLKHVQTQQNNATKRYRVVVSDGFLYQQGM 60
           M V+LT  AI A+    V    L+P+LQ++++K +   Q  + +RYR ++SDG   Q  M
Sbjct: 1   MPVSLTPNAITAIHDGDVN---LKPLLQVLEIKMIGRSQERSQERYRFLISDGVSAQHAM 57

Query: 61  LATQRNELVDSGKLQKGSIVRLTQFACNHVGDRMXXXXXXXXXXMDKCDLIGEPKPAPRN 120
           +A Q N+ V SG+ +KGSIV+L  + C+ V  R           + + + IG P      
Sbjct: 58  VAVQLNDRVKSGQFEKGSIVQLIDYICSDVKGRKLIVVLNMETIVQQSETIGNPTIFGET 117

Query: 121 GARAQSATGQSG 132
              AQ     +G
Sbjct: 118 DTEAQKTFSGTG 129


>AT5G08020.1 | Symbols: ATRPA70B, RPA70B | RPA70-kDa subunit B |
           chr5:2572107-2574879 FORWARD LENGTH=604
          Length = 604

 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 27/49 (55%), Positives = 31/49 (63%)

Query: 273 NRGPIGRNEAPPRIIPIAALNPYQNMWTIKARVTAKGELRAYHNARGEG 321
           N  P  R     R+ P+ +LNPYQ  WTIK RVT KG +R Y NARGEG
Sbjct: 144 NAAPAARMAMTRRVHPLVSLNPYQGSWTIKVRVTNKGVMRTYKNARGEG 192


>AT5G61000.1 | Symbols: RPA70D, ATRPA70D | Replication factor-A
           protein 1-related | chr5:24549682-24552641 REVERSE
           LENGTH=629
          Length = 629

 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 27/49 (55%), Positives = 31/49 (63%)

Query: 273 NRGPIGRNEAPPRIIPIAALNPYQNMWTIKARVTAKGELRAYHNARGEG 321
           N  P  R     R+ P+ +LNPYQ  WTIK RVT KG +R Y NARGEG
Sbjct: 168 NAAPAARMAMTRRVHPLVSLNPYQGNWTIKVRVTNKGVMRNYKNARGEG 216