Miyakogusa Predicted Gene
- Lj2g3v1537380.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v1537380.1 Non Chatacterized Hit- tr|G7K6W0|G7K6W0_MEDTR
Putative uncharacterized protein OS=Medicago truncatul,70.48,0,FAMILY
NOT NAMED,NULL; WRC,WRC; QLQ,Glutamine-Leucine-Glutamine, QLQ;
seg,NULL; ALDEHYDE_DEHYDR_CYS,,CUFF.37356.1
(339 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G13960.1 | Symbols: AtGRF5, GRF5 | growth-regulating factor 5... 135 5e-32
AT4G37740.1 | Symbols: AtGRF2, GRF2 | growth-regulating factor 2... 133 2e-31
AT3G52910.1 | Symbols: AtGRF4, GRF4 | growth-regulating factor 4... 123 2e-28
AT2G36400.1 | Symbols: AtGRF3, GRF3 | growth-regulating factor 3... 122 4e-28
AT2G22840.1 | Symbols: AtGRF1, GRF1 | growth-regulating factor 1... 117 1e-26
AT2G06200.1 | Symbols: AtGRF6, GRF6 | growth-regulating factor 6... 114 1e-25
AT5G53660.1 | Symbols: AtGRF7, GRF7 | growth-regulating factor 7... 97 1e-20
AT4G24150.1 | Symbols: AtGRF8, GRF8 | growth-regulating factor 8... 86 3e-17
AT2G45480.1 | Symbols: AtGRF9, GRF9 | growth-regulating factor 9... 77 1e-14
>AT3G13960.1 | Symbols: AtGRF5, GRF5 | growth-regulating factor 5 |
chr3:4608526-4610160 FORWARD LENGTH=397
Length = 397
Score = 135 bits (339), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 63/108 (58%), Positives = 85/108 (78%), Gaps = 10/108 (9%)
Query: 33 FTVSQWQELEHQALIFKYLKAGLSVPPDLLVPIRKSLQ--LMSH--PHSSLGY------Y 82
FT +QW+ELEHQALI+KY+ +G+ VPP+L+ IR+SL L+S PH SLG+ +
Sbjct: 17 FTPTQWEELEHQALIYKYMVSGVPVPPELIFSIRRSLDTSLVSRLLPHQSLGWGCYQMGF 76
Query: 83 GKKIDPEPGRCRRTDGKKWRCAKDAHPDSKYCDRHMIRRRYRSRKPVE 130
G+K DPEPGRCRRTDGKKWRC+++A+PDSKYC++HM R R R+RK ++
Sbjct: 77 GRKPDPEPGRCRRTDGKKWRCSREAYPDSKYCEKHMHRGRNRARKSLD 124
>AT4G37740.1 | Symbols: AtGRF2, GRF2 | growth-regulating factor 2 |
chr4:17725533-17727609 REVERSE LENGTH=535
Length = 535
Score = 133 bits (334), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 63/106 (59%), Positives = 77/106 (72%), Gaps = 8/106 (7%)
Query: 33 FTVSQWQELEHQALIFKYLKAGLSVPPDLLVPIRKSL-QLMSHPHSS-------LGYYGK 84
FT++QW ELE QALI+KY+ A + VP LL+ I+KS S P SS LG+ G
Sbjct: 165 FTLTQWAELEQQALIYKYITANVPVPSSLLISIKKSFYPYGSLPPSSFGWGTFHLGFAGG 224
Query: 85 KIDPEPGRCRRTDGKKWRCAKDAHPDSKYCDRHMIRRRYRSRKPVE 130
+DPEPGRCRRTDGKKWRC++DA PD KYC+RH+ R R+RSRKPVE
Sbjct: 225 NMDPEPGRCRRTDGKKWRCSRDAVPDQKYCERHINRGRHRSRKPVE 270
>AT3G52910.1 | Symbols: AtGRF4, GRF4 | growth-regulating factor 4 |
chr3:19616177-19618268 REVERSE LENGTH=380
Length = 380
Score = 123 bits (309), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 61/112 (54%), Positives = 77/112 (68%), Gaps = 14/112 (12%)
Query: 33 FTVSQWQELEHQALIFKYLKAGLSVPPDLLVPIRKSL------QLMSHP-------HSSL 79
F+ +QWQELE QALI++Y+ AG SVP +LL+PI+KSL + HP H
Sbjct: 83 FSWAQWQELELQALIYRYMLAGASVPQELLLPIKKSLLHQSPMHFLHHPLQHSFPHHQPS 142
Query: 80 GYYGK-KIDPEPGRCRRTDGKKWRCAKDAHPDSKYCDRHMIRRRYRSRKPVE 130
Y+G+ +DPEPGRC+RTDGKKWRC++D KYCDRH+ R R RSRKPVE
Sbjct: 143 WYWGRGAMDPEPGRCKRTDGKKWRCSRDVVAGHKYCDRHIHRGRNRSRKPVE 194
>AT2G36400.1 | Symbols: AtGRF3, GRF3 | growth-regulating factor 3 |
chr2:15270300-15272617 REVERSE LENGTH=398
Length = 398
Score = 122 bits (306), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 61/111 (54%), Positives = 76/111 (68%), Gaps = 13/111 (11%)
Query: 33 FTVSQWQELEHQALIFKYLKAGLSVPPDLLVPIRKSLQLMS------HPHSSLGYYG--- 83
F+ +QWQELE QALI++Y+ AG +VP +LL+PI+KSL +S HP L +Y
Sbjct: 77 FSWAQWQELELQALIYRYMLAGAAVPQELLLPIKKSLLHLSPSYFLHHPLQHLPHYQPAW 136
Query: 84 ----KKIDPEPGRCRRTDGKKWRCAKDAHPDSKYCDRHMIRRRYRSRKPVE 130
+DPEPGRCRRTDGKKWRC++D KYC+RHM R R RSRKPVE
Sbjct: 137 YLGRAAMDPEPGRCRRTDGKKWRCSRDVFAGHKYCERHMHRGRNRSRKPVE 187
>AT2G22840.1 | Symbols: AtGRF1, GRF1 | growth-regulating factor 1 |
chr2:9728841-9731141 FORWARD LENGTH=530
Length = 530
Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/106 (56%), Positives = 77/106 (72%), Gaps = 8/106 (7%)
Query: 33 FTVSQWQELEHQALIFKYLKAGLSVPPDLLVPIRKSL-QLMSHPHSS-------LGYYGK 84
F+++QW ELE QALI+KY+ A + VP LL+ ++KS S P +S LG+ G
Sbjct: 134 FSLTQWAELEQQALIYKYITANVPVPSSLLLSLKKSFFPYGSLPPNSFGWGSFHLGFSGG 193
Query: 85 KIDPEPGRCRRTDGKKWRCAKDAHPDSKYCDRHMIRRRYRSRKPVE 130
+DPEPGRCRRTDGKKWRC++DA PD KYC+RH+ R R+RSRKPVE
Sbjct: 194 NMDPEPGRCRRTDGKKWRCSRDAVPDQKYCERHINRGRHRSRKPVE 239
>AT2G06200.1 | Symbols: AtGRF6, GRF6 | growth-regulating factor 6 |
chr2:2426340-2427255 FORWARD LENGTH=244
Length = 244
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/117 (52%), Positives = 74/117 (63%), Gaps = 21/117 (17%)
Query: 33 FTVSQWQELEHQALIFKYLKAGLSVPPDLLVPIRKSLQLMSH---------------PHS 77
FT SQW+ELE+QAL+FKYL A + VPP LL I++ S PH
Sbjct: 7 FTESQWEELENQALVFKYLAANMPVPPHLLFLIKRPFLFSSSSSSSSSSSFFSPTLSPHF 66
Query: 78 SLGYY----GKKIDPEPGRCRRTDGKKWRCAKDAHPDSKYCDRHMIRRRYR--SRKP 128
Y G+KID EPGRCRRTDGKKWRC+K+A+PDSKYC+RHM R + R SRKP
Sbjct: 67 GWNVYEMGMGRKIDAEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSSSRKP 123
>AT5G53660.1 | Symbols: AtGRF7, GRF7 | growth-regulating factor 7 |
chr5:21794636-21795929 FORWARD LENGTH=365
Length = 365
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/100 (53%), Positives = 65/100 (65%), Gaps = 11/100 (11%)
Query: 33 FTVSQWQELEHQALIFKYLKAGLSVPPDLLVPIRKSLQLMSHPHSSLGYYGKKI--DPEP 90
FT +Q +ELE QA+I+KY+ A + VP DLLV S P S+ K I D EP
Sbjct: 60 FTNAQLKELERQAMIYKYMIASIPVPFDLLV---------SSPSSASPCNNKNIAGDLEP 110
Query: 91 GRCRRTDGKKWRCAKDAHPDSKYCDRHMIRRRYRSRKPVE 130
GRCRRTDGKKWRCAK+ + KYC++H+ R R RSRK VE
Sbjct: 111 GRCRRTDGKKWRCAKEVVSNHKYCEKHLHRGRPRSRKHVE 150
>AT4G24150.1 | Symbols: AtGRF8, GRF8 | growth-regulating factor 8 |
chr4:12535972-12539387 FORWARD LENGTH=493
Length = 493
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 64/137 (46%), Gaps = 39/137 (28%)
Query: 33 FTVSQWQELEHQALIFKYLKAGLSVPPDLLVPIRKSLQLMSHPHSSLGYYG--------- 83
F+ +QW ELE Q I+KY+ A + VPP+LL P K+ Q ++P G
Sbjct: 150 FSEAQWHELERQRNIYKYMMASVPVPPELLTPFPKNHQSNTNPDVDTYRSGMFSIYADYK 209
Query: 84 ------------------------------KKIDPEPGRCRRTDGKKWRCAKDAHPDSKY 113
D EP RC+RTDGKKWRC+++ PD KY
Sbjct: 210 NLPLSMWMTVTVAVATGGSLQLGIASSASNNTADLEPWRCKRTDGKKWRCSRNVIPDQKY 269
Query: 114 CDRHMIRRRYRSRKPVE 130
C+RH + R RSRK VE
Sbjct: 270 CERHTHKSRPRSRKHVE 286
>AT2G45480.1 | Symbols: AtGRF9, GRF9 | growth-regulating factor 9 |
chr2:18745583-18747403 FORWARD LENGTH=429
Length = 429
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 59/105 (56%), Gaps = 16/105 (15%)
Query: 36 SQWQELEHQALIFKYLKAGLSVPPDLLVPI-------------RKSLQLMSHPHSSLGYY 82
+Q E QAL+++Y++AGL VP L+VPI S L+S+ + +
Sbjct: 26 AQLMEFRMQALVYRYIEAGLRVPHHLVVPIWNSLALSSSSNYNYHSSSLLSNKGVT---H 82
Query: 83 GKKIDPEPGRCRRTDGKKWRCAKDAHPDSKYCDRHMIRRRYRSRK 127
++ EP RCRRTDGKKWRC+ KYC+RHM R R RSRK
Sbjct: 83 IDTLETEPTRCRRTDGKKWRCSNTVLLFEKYCERHMHRGRKRSRK 127
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 49/94 (52%), Gaps = 15/94 (15%)
Query: 37 QWQELEHQALIFKYLKAGLSVPPDLLVPIRKSLQLMSHPHSSLGYYGKKIDPEPGRCRRT 96
+W+ + +F G+ PD ++ R +L G + D EPGRCRRT
Sbjct: 269 EWKNMNVNGGLFH----GIHFSPDTVLQERGCFRLQ----------GVETDNEPGRCRRT 314
Query: 97 DGKKWRCAKDAHPDSKYCDRHMIRRRYRSRKPVE 130
DGKKWRC+KD KYCD+HM R + + PV+
Sbjct: 315 DGKKWRCSKDVLSGQKYCDKHM-HRGMKKKHPVD 347