Miyakogusa Predicted Gene
- Lj2g3v1536240.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v1536240.1 Non Chatacterized Hit- tr|I3SNS8|I3SNS8_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,98.88,0,seg,NULL;
SCAMP,SCAMP; SECRETORY CARRIER-ASSOCIATED MEMBRANE PROTEIN,NULL;
SECRETORY CARRIER-ASSOCIA,CUFF.37347.1
(268 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G32050.1 | Symbols: | SCAMP family protein | chr1:11528616-1... 380 e-106
AT1G61250.1 | Symbols: SC3 | secretory carrier 3 | chr1:22586035... 311 2e-85
AT1G61250.2 | Symbols: SC3 | secretory carrier 3 | chr1:22586035... 297 4e-81
AT1G11180.1 | Symbols: | Secretory carrier membrane protein (SC... 295 2e-80
AT1G11180.2 | Symbols: | Secretory carrier membrane protein (SC... 290 6e-79
AT2G20840.1 | Symbols: | Secretory carrier membrane protein (SC... 277 5e-75
AT1G03550.1 | Symbols: | Secretory carrier membrane protein (SC... 265 3e-71
>AT1G32050.1 | Symbols: | SCAMP family protein |
chr1:11528616-11530974 FORWARD LENGTH=264
Length = 264
Score = 380 bits (977), Expect = e-106, Method: Compositional matrix adjust.
Identities = 186/270 (68%), Positives = 209/270 (77%), Gaps = 8/270 (2%)
Query: 1 MNRHHDPNPFDEDE--VNPFSNGAAPGSKSRIPPLASEPLGFGQRHDATVDIPLDTTNEP 58
MNRHHDPNPFDEDE VNPFS G R+P AS P+ +GQ DATVDIPLD N+
Sbjct: 1 MNRHHDPNPFDEDEEIVNPFSKGGG-----RVPA-ASRPVEYGQSLDATVDIPLDNMNDS 54
Query: 59 KKKGQELAAWEAXXXXXXXXXXXXXXAVSRAGVPVDDKNWPPIFPIIHHDIANEIPVHAQ 118
+K ++LA WEA A+++ GV +DDKNWPP FPIIHHDIA EIPVHAQ
Sbjct: 55 SQKQRKLADWEAELRKKEMDIKRREEAIAKFGVQIDDKNWPPFFPIIHHDIAKEIPVHAQ 114
Query: 119 RLQYLAFASWLGIVLCLVFNVVAVMVCWIRGGGVKIFFLAVIYALLGVPLSYVLWYRPLY 178
+LQYLAFASWLGIVLCLVFNV+A MVCWI+GGGVKIFFLA IYAL+G PLSYVLWYRPLY
Sbjct: 115 KLQYLAFASWLGIVLCLVFNVIATMVCWIKGGGVKIFFLATIYALIGCPLSYVLWYRPLY 174
Query: 179 RAMRTDSALKFGWFFMFYLLHXXXXXXXXXXPPVVFHGKSLTGILAATDVFSDHVLVGIF 238
RAMRTDSALKFGWFF YL+H PP+ FHGKSLTG+LAA DV SD +L GIF
Sbjct: 175 RAMRTDSALKFGWFFFTYLIHIGFCIVAAIAPPIFFHGKSLTGVLAAIDVISDSLLAGIF 234
Query: 239 YLVGFGLFCLESLLSLWVIQKIYLFFRGHK 268
Y +GFGLFCLESLLSLWV+QKIYL+FRG+K
Sbjct: 235 YFIGFGLFCLESLLSLWVLQKIYLYFRGNK 264
>AT1G61250.1 | Symbols: SC3 | secretory carrier 3 |
chr1:22586035-22588664 FORWARD LENGTH=289
Length = 289
Score = 311 bits (798), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 155/271 (57%), Positives = 191/271 (70%), Gaps = 7/271 (2%)
Query: 1 MNRHHDPNPF-DEDEVNPFSN--GAAPGSKSRIPPLASEPLGFGQRHDATVDIPLDT--T 55
M +DPNPF +E+EVNPF+N G P S SR+ PL EP+GF + TVDIPLD T
Sbjct: 1 MANRYDPNPFAEEEEVNPFANARGVPPASNSRLSPLPPEPVGFD--YGRTVDIPLDRAGT 58
Query: 56 NEPKKKGQELAAWEAXXXXXXXXXXXXXXAVSRAGVPVDDKNWPPIFPIIHHDIANEIPV 115
+ KKK +EL A EA A +RAG+ ++ KNWPP FP+IHHDIANEIPV
Sbjct: 59 QDLKKKEKELQAKEAELKRREQDLKRKEDAAARAGIVIEVKNWPPFFPLIHHDIANEIPV 118
Query: 116 HAQRLQYLAFASWLGIVLCLVFNVVAVMVCWIRGGGVKIFFLAVIYALLGVPLSYVLWYR 175
H QRLQY+ FA++LG+VLCL +N++AV WI+G GV I+ LA+IY + GVP YVLWYR
Sbjct: 119 HLQRLQYVTFATYLGLVLCLFWNIIAVTTAWIKGEGVTIWLLALIYFIAGVPGGYVLWYR 178
Query: 176 PLYRAMRTDSALKFGWFFMFYLLHXXXXXXXXXXPPVVFHGKSLTGILAATDVFSDHVLV 235
PLYRA RTDSAL FGWFF+FY+LH PPVVF GKSL GIL A DV S +V
Sbjct: 179 PLYRAFRTDSALSFGWFFLFYMLHIAFCVFAAVAPPVVFKGKSLAGILPAIDVLSGQAIV 238
Query: 236 GIFYLVGFGLFCLESLLSLWVIQKIYLFFRG 266
GIFY +GF FCLES++S+WVIQ++Y++FRG
Sbjct: 239 GIFYFIGFAFFCLESVVSIWVIQQVYMYFRG 269
>AT1G61250.2 | Symbols: SC3 | secretory carrier 3 |
chr1:22586035-22588519 FORWARD LENGTH=274
Length = 274
Score = 297 bits (761), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 151/263 (57%), Positives = 183/263 (69%), Gaps = 7/263 (2%)
Query: 1 MNRHHDPNPF-DEDEVNPFSN--GAAPGSKSRIPPLASEPLGFGQRHDATVDIPLDT--T 55
M +DPNPF +E+EVNPF+N G P S SR+ PL EP+GF + TVDIPLD T
Sbjct: 1 MANRYDPNPFAEEEEVNPFANARGVPPASNSRLSPLPPEPVGFD--YGRTVDIPLDRAGT 58
Query: 56 NEPKKKGQELAAWEAXXXXXXXXXXXXXXAVSRAGVPVDDKNWPPIFPIIHHDIANEIPV 115
+ KKK +EL A EA A +RAG+ ++ KNWPP FP+IHHDIANEIPV
Sbjct: 59 QDLKKKEKELQAKEAELKRREQDLKRKEDAAARAGIVIEVKNWPPFFPLIHHDIANEIPV 118
Query: 116 HAQRLQYLAFASWLGIVLCLVFNVVAVMVCWIRGGGVKIFFLAVIYALLGVPLSYVLWYR 175
H QRLQY+ FA++LG+VLCL +N++AV WI+G GV I+ LA+IY + GVP YVLWYR
Sbjct: 119 HLQRLQYVTFATYLGLVLCLFWNIIAVTTAWIKGEGVTIWLLALIYFIAGVPGGYVLWYR 178
Query: 176 PLYRAMRTDSALKFGWFFMFYLLHXXXXXXXXXXPPVVFHGKSLTGILAATDVFSDHVLV 235
PLYRA RTDSAL FGWFF+FY+LH PPVVF GKSL GIL A DV S +V
Sbjct: 179 PLYRAFRTDSALSFGWFFLFYMLHIAFCVFAAVAPPVVFKGKSLAGILPAIDVLSGQAIV 238
Query: 236 GIFYLVGFGLFCLESLLSLWVIQ 258
GIFY +GF FCLES++S+WVIQ
Sbjct: 239 GIFYFIGFAFFCLESVVSIWVIQ 261
>AT1G11180.1 | Symbols: | Secretory carrier membrane protein
(SCAMP) family protein | chr1:3745829-3748307 FORWARD
LENGTH=291
Length = 291
Score = 295 bits (756), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 153/274 (55%), Positives = 187/274 (68%), Gaps = 9/274 (3%)
Query: 1 MNRHHDPNPFDE-DEVNPFSN-GAAPG-SKSRIPPLASEPLGFGQRHDATVDIPLDT--- 54
M +D N FDE DEVNPF+N G+ P S SR+ PL EP GFG + TVDIPLD
Sbjct: 1 MGGRYDRNTFDEQDEVNPFANPGSVPAASNSRLSPLPPEPAGFG--YGRTVDIPLDRPGS 58
Query: 55 -TNEPKKKGQELAAWEAXXXXXXXXXXXXXXAVSRAGVPVDDKNWPPIFPIIHHDIANEI 113
+ KKK +EL A EA A +RAG+ ++ KNWP FP+IHHDIANEI
Sbjct: 59 GAQDLKKKEKELQAKEADLRRREQDLKRKQDAAARAGIVIEAKNWPTFFPLIHHDIANEI 118
Query: 114 PVHAQRLQYLAFASWLGIVLCLVFNVVAVMVCWIRGGGVKIFFLAVIYALLGVPLSYVLW 173
V QRLQY+AFA++LG+VL L +N++AV WI+G GV I+ LAVIY + GVP YVLW
Sbjct: 119 LVRLQRLQYIAFATYLGLVLALFWNIIAVTTAWIKGEGVTIWLLAVIYFISGVPGGYVLW 178
Query: 174 YRPLYRAMRTDSALKFGWFFMFYLLHXXXXXXXXXXPPVVFHGKSLTGILAATDVFSDHV 233
YRPLYRA R+DSA FGWFF+FY+LH PP+VF GKSL GIL A DV S
Sbjct: 179 YRPLYRAFRSDSAFNFGWFFLFYMLHILFCLFAAVAPPIVFKGKSLAGILPAIDVLSAQA 238
Query: 234 LVGIFYLVGFGLFCLESLLSLWVIQKIYLFFRGH 267
LVGIFY +GFGLFCLES++S+WVIQ++Y++FRG
Sbjct: 239 LVGIFYFIGFGLFCLESVVSIWVIQQVYMYFRGS 272
>AT1G11180.2 | Symbols: | Secretory carrier membrane protein
(SCAMP) family protein | chr1:3745829-3748307 FORWARD
LENGTH=304
Length = 304
Score = 290 bits (742), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 153/287 (53%), Positives = 187/287 (65%), Gaps = 22/287 (7%)
Query: 1 MNRHHDPNPFDE-DEVNPFSN-GAAPG-SKSRIPPLASEPLGFGQRHDATVDIPLDT--- 54
M +D N FDE DEVNPF+N G+ P S SR+ PL EP GFG + TVDIPLD
Sbjct: 1 MGGRYDRNTFDEQDEVNPFANPGSVPAASNSRLSPLPPEPAGFG--YGRTVDIPLDRPGS 58
Query: 55 --------------TNEPKKKGQELAAWEAXXXXXXXXXXXXXXAVSRAGVPVDDKNWPP 100
+ KKK +EL A EA A +RAG+ ++ KNWP
Sbjct: 59 GAQNNSCLNVTLLGIQDLKKKEKELQAKEADLRRREQDLKRKQDAAARAGIVIEAKNWPT 118
Query: 101 IFPIIHHDIANEIPVHAQRLQYLAFASWLGIVLCLVFNVVAVMVCWIRGGGVKIFFLAVI 160
FP+IHHDIANEI V QRLQY+AFA++LG+VL L +N++AV WI+G GV I+ LAVI
Sbjct: 119 FFPLIHHDIANEILVRLQRLQYIAFATYLGLVLALFWNIIAVTTAWIKGEGVTIWLLAVI 178
Query: 161 YALLGVPLSYVLWYRPLYRAMRTDSALKFGWFFMFYLLHXXXXXXXXXXPPVVFHGKSLT 220
Y + GVP YVLWYRPLYRA R+DSA FGWFF+FY+LH PP+VF GKSL
Sbjct: 179 YFISGVPGGYVLWYRPLYRAFRSDSAFNFGWFFLFYMLHILFCLFAAVAPPIVFKGKSLA 238
Query: 221 GILAATDVFSDHVLVGIFYLVGFGLFCLESLLSLWVIQKIYLFFRGH 267
GIL A DV S LVGIFY +GFGLFCLES++S+WVIQ++Y++FRG
Sbjct: 239 GILPAIDVLSAQALVGIFYFIGFGLFCLESVVSIWVIQQVYMYFRGS 285
>AT2G20840.1 | Symbols: | Secretory carrier membrane protein
(SCAMP) family protein | chr2:8971925-8974400 REVERSE
LENGTH=282
Length = 282
Score = 277 bits (709), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 143/267 (53%), Positives = 191/267 (71%), Gaps = 6/267 (2%)
Query: 1 MNRHHDPNPFDEDEVNPFSN-GAAPGSKSRIPPLASEPLGFGQRHDATVDIPLDTTNEPK 59
M+R+ + FD+ E+NPF+N + P + S++ PL EP G AT+DIPLD+ + K
Sbjct: 1 MSRYQS-HSFDDGEINPFANPTSVPAATSKLSPLPPEPYDRG----ATMDIPLDSGKDLK 55
Query: 60 KKGQELAAWEAXXXXXXXXXXXXXXAVSRAGVPVDDKNWPPIFPIIHHDIANEIPVHAQR 119
K +EL EA A+++AG+ +++KNWPP FP+IHHDI+NEIP+H QR
Sbjct: 56 AKEKELREKEAELKRREQEIKRKEDAIAQAGIVIEEKNWPPFFPLIHHDISNEIPIHLQR 115
Query: 120 LQYLAFASWLGIVLCLVFNVVAVMVCWIRGGGVKIFFLAVIYALLGVPLSYVLWYRPLYR 179
+QY+AF S LG+V+CL++N+VAV WI+G G I+FLA+IY + GVP +YV+WYRPLYR
Sbjct: 116 IQYVAFTSMLGLVVCLLWNIVAVTTAWIKGEGPTIWFLAIIYFISGVPGAYVMWYRPLYR 175
Query: 180 AMRTDSALKFGWFFMFYLLHXXXXXXXXXXPPVVFHGKSLTGILAATDVFSDHVLVGIFY 239
AMRTDSALKFGWFF YL H PP++F GKSLTGIL A DV S ++LVGIFY
Sbjct: 176 AMRTDSALKFGWFFFTYLFHIAFCVFAAVAPPIIFKGKSLTGILPAIDVLSGNILVGIFY 235
Query: 240 LVGFGLFCLESLLSLWVIQKIYLFFRG 266
+GFG FCLESL+S+WVIQ++Y++FRG
Sbjct: 236 FIGFGFFCLESLVSIWVIQQVYMYFRG 262
>AT1G03550.1 | Symbols: | Secretory carrier membrane protein
(SCAMP) family protein | chr1:885851-887778 REVERSE
LENGTH=283
Length = 283
Score = 265 bits (677), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 136/265 (51%), Positives = 179/265 (67%), Gaps = 6/265 (2%)
Query: 4 HHDPNPFDEDEVNPFSNGAA--PGSKSRIPPLASEPLGFGQRHDATVDIPLDTTNEPKKK 61
HDPNPF ++E+NPF+N + P S S + PL EP G ATVDIPLD+ N+ + K
Sbjct: 3 RHDPNPFADEEINPFANHTSVPPASNSYLKPLPPEPYDRG----ATVDIPLDSGNDLRAK 58
Query: 62 GQELAAWEAXXXXXXXXXXXXXXAVSRAGVPVDDKNWPPIFPIIHHDIANEIPVHAQRLQ 121
EL A E A++R GV +++KNWP FP+IHHDI NEIP+H Q++Q
Sbjct: 59 EMELQAKENELKRKEQELKRREDAIARTGVVIEEKNWPEFFPLIHHDIPNEIPIHLQKIQ 118
Query: 122 YLAFASWLGIVLCLVFNVVAVMVCWIRGGGVKIFFLAVIYALLGVPLSYVLWYRPLYRAM 181
Y+AF + LG+V CL++N+VAV V WI+G G I+ L++IY L GVP +YVLWYRPLYRA
Sbjct: 119 YVAFTTLLGLVGCLLWNIVAVTVAWIKGEGPTIWLLSIIYFLAGVPGAYVLWYRPLYRAT 178
Query: 182 RTDSALKFGWFFMFYLLHXXXXXXXXXXPPVVFHGKSLTGILAATDVFSDHVLVGIFYLV 241
RTDSALKFG FF FY+ H PPV+F GKSLTG L A ++ + + VGI Y +
Sbjct: 179 RTDSALKFGAFFFFYVFHIAFCGFAAVAPPVIFQGKSLTGFLPAIELLTTNAAVGIMYFI 238
Query: 242 GFGLFCLESLLSLWVIQKIYLFFRG 266
G G FC+E+LL++WVIQ++Y +FRG
Sbjct: 239 GAGFFCIETLLNIWVIQQVYAYFRG 263