Miyakogusa Predicted Gene

Lj2g3v1533030.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1533030.1 Non Chatacterized Hit- tr|D8RP38|D8RP38_SELML
Putative uncharacterized protein OS=Selaginella
moelle,39.6,3e-19,seg,NULL,CUFF.37339.1
         (149 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G31940.1 | Symbols:  | unknown protein; LOCATED IN: plasma me...   199   8e-52
AT2G35585.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...   186   6e-48

>AT1G31940.1 | Symbols:  | unknown protein; LOCATED IN: plasma
           membrane; EXPRESSED IN: 22 plant structures; EXPRESSED
           DURING: 13 growth stages; BEST Arabidopsis thaliana
           protein match is: unknown protein (TAIR:AT2G35585.1);
           Has 67 Blast hits to 67 proteins in 17 species: Archae -
           0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67;
           Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
           | chr1:11470293-11471154 REVERSE LENGTH=158
          Length = 158

 Score =  199 bits (505), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 102/149 (68%), Positives = 117/149 (78%), Gaps = 3/149 (2%)

Query: 1   MVGLFSRFSVGRSTHRRTQSAIDEREVMPPNLEX-XXXXXXXXXVSHGIEVAVEFKPVEH 59
           MVG+FSRFSVGRSTHRRTQSAID++EV+ PN +            +HGIEVA EFKPVEH
Sbjct: 1   MVGIFSRFSVGRSTHRRTQSAIDDKEVLAPNSDVIAATTTTATTATHGIEVATEFKPVEH 60

Query: 60  PVEPLDNDSPIQCPLPEPSILNDGRIWKERVSATVRRRGDLPVMKEGGTLESEGAV--RK 117
           PVEPLDND PIQCPLPEPSILNDGRIWKERVSA++RR+GDL ++K+    ES+G+     
Sbjct: 61  PVEPLDNDLPIQCPLPEPSILNDGRIWKERVSASMRRKGDLQIVKDEAASESDGSAPKPP 120

Query: 118 PRTQSNRMILPSLSAPEHNLLKLLEECHA 146
              Q NR ILPSLSAPEHNLL LLEEC+A
Sbjct: 121 RPPQPNRSILPSLSAPEHNLLNLLEECNA 149


>AT2G35585.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT1G31940.1); Has 67 Blast hits to 67 proteins in
           17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
           - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 0
           (source: NCBI BLink). | chr2:14936889-14937873 FORWARD
           LENGTH=156
          Length = 156

 Score =  186 bits (472), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 96/154 (62%), Positives = 115/154 (74%), Gaps = 6/154 (3%)

Query: 1   MVGLFSRFSVGRSTHRRTQSAIDEREVMPPNLEXXXXXXXXXXVSHGIEVAVEFKPVEHP 60
           MVG+FSRFSV R +HRRTQSAID REV+ P  +           +HGIEVA EFKPV+HP
Sbjct: 1   MVGIFSRFSVVRGSHRRTQSAIDGREVLSPRSDLAPATNTTTTETHGIEVATEFKPVDHP 60

Query: 61  VEPLDNDSPIQCPLPEPSILNDGRIWKERVSA-TVRRRGDLPVMKEGGTLESEGAV---- 115
           +EPLDND PIQCPLPEPSILNDGR+WKERVSA ++RRR DL ++++G   ES+ +V    
Sbjct: 61  MEPLDNDQPIQCPLPEPSILNDGRLWKERVSASSMRRRSDLAIVQDGMDEESDVSVTSIP 120

Query: 116 -RKPRTQSNRMILPSLSAPEHNLLKLLEECHASG 148
            R  +  +NR ILPSLSAPEH+LL LLEEC  SG
Sbjct: 121 SRTSQCNTNRPILPSLSAPEHDLLNLLEECKVSG 154