Miyakogusa Predicted Gene

Lj2g3v1510860.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1510860.2 Non Chatacterized Hit- tr|I3T658|I3T658_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,99.36,0,no
description,ESCRT-II complex, Vps25 subunit, N-terminal winged helix;
no description,ESCRT-II com,CUFF.37324.2
         (157 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G19003.1 | Symbols: VPS25 | E2F/DP family winged-helix DNA-bi...   282   7e-77
AT4G19003.2 | Symbols: VPS25 | E2F/DP family winged-helix DNA-bi...   282   7e-77

>AT4G19003.1 | Symbols: VPS25 | E2F/DP family winged-helix
           DNA-binding domain | chr4:10407571-10408582 REVERSE
           LENGTH=179
          Length = 179

 Score =  282 bits (721), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 129/157 (82%), Positives = 146/157 (92%)

Query: 1   MQKLGDFKLPHFFNYPPYFTLQPVRDTREKQIQLWKELILDYCKTQKLFVIGLEEEFPLF 60
           MQKL DFKLP FFNYPPYFTLQPVRDTREKQIQLWKELILDYCK+QK+F+IG+EE+FPLF
Sbjct: 1   MQKLADFKLPQFFNYPPYFTLQPVRDTREKQIQLWKELILDYCKSQKIFLIGVEEDFPLF 60

Query: 61  TNPVIERSLTHEAREAFVSALVSEGRAEWMDKGHRKCLVLWHRIQDWAEILLQFAKDNGL 120
           +N  I+RSL+HEARE F+SA+V EGRAEW+DKGHRKCL+LWHRIQDWA+I+LQF +DNGL
Sbjct: 61  SNSAIDRSLSHEARETFLSAIVGEGRAEWLDKGHRKCLILWHRIQDWADIVLQFVRDNGL 120

Query: 121 EDSVVTIEEIRFGTESQGTELHGIDRTILNRALKLLE 157
           EDSV+T+EEIR GTES GTEL GIDRTIL RALKLLE
Sbjct: 121 EDSVMTVEEIRSGTESLGTELQGIDRTILMRALKLLE 157


>AT4G19003.2 | Symbols: VPS25 | E2F/DP family winged-helix
           DNA-binding domain | chr4:10407571-10408582 REVERSE
           LENGTH=179
          Length = 179

 Score =  282 bits (721), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 129/157 (82%), Positives = 146/157 (92%)

Query: 1   MQKLGDFKLPHFFNYPPYFTLQPVRDTREKQIQLWKELILDYCKTQKLFVIGLEEEFPLF 60
           MQKL DFKLP FFNYPPYFTLQPVRDTREKQIQLWKELILDYCK+QK+F+IG+EE+FPLF
Sbjct: 1   MQKLADFKLPQFFNYPPYFTLQPVRDTREKQIQLWKELILDYCKSQKIFLIGVEEDFPLF 60

Query: 61  TNPVIERSLTHEAREAFVSALVSEGRAEWMDKGHRKCLVLWHRIQDWAEILLQFAKDNGL 120
           +N  I+RSL+HEARE F+SA+V EGRAEW+DKGHRKCL+LWHRIQDWA+I+LQF +DNGL
Sbjct: 61  SNSAIDRSLSHEARETFLSAIVGEGRAEWLDKGHRKCLILWHRIQDWADIVLQFVRDNGL 120

Query: 121 EDSVVTIEEIRFGTESQGTELHGIDRTILNRALKLLE 157
           EDSV+T+EEIR GTES GTEL GIDRTIL RALKLLE
Sbjct: 121 EDSVMTVEEIRSGTESLGTELQGIDRTILMRALKLLE 157