Miyakogusa Predicted Gene

Lj2g3v1510680.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1510680.1 tr|F4X4V2|F4X4V2_ACREC Protein IWS1-like protein
OS=Acromyrmex echinatior GN=G5I_13374 PE=4 SV=1,41.09,2e-19,seg,NULL;
TFIIS_N,Transcription factor IIS, N-terminal; SUBFAMILY NOT
NAMED,NULL; FAMILY NOT NAMED,N,CUFF.37829.1
         (209 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G32130.1 | Symbols: IWS1, ATIWS1 | Transcription elongation f...   231   4e-61
AT1G32130.2 | Symbols: IWS1 | Transcription elongation factor (T...   230   4e-61
AT4G19000.1 | Symbols: IWS2, ATIWS2 | Transcription elongation f...   169   2e-42

>AT1G32130.1 | Symbols: IWS1, ATIWS1 | Transcription elongation
           factor (TFIIS) family protein | chr1:11559146-11561786
           REVERSE LENGTH=502
          Length = 502

 Score =  231 bits (588), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 130/212 (61%), Positives = 147/212 (69%), Gaps = 4/212 (1%)

Query: 1   MWDTIAGGDSEDDQEGVRNLDDDNFIDDTGVEPG-FYGNYNEPSSXXXXXXXXXXXXXXX 59
           MW +IA  + E+D+EGVR +DDDNFIDDTG++P   YG      S               
Sbjct: 150 MWKSIAH-NPENDEEGVRTMDDDNFIDDTGLDPSERYGGDAGDRSPTHYPQAEEGEDEDE 208

Query: 60  INDLFKMGKKK--NERSPXXXXXXXXXXXXXXXXXXXXXXXXNRQGKPAINKLKKLPLLT 117
           +N+LFKMGKKK   ER+P                        NRQGKPAINKLKKL LLT
Sbjct: 209 VNNLFKMGKKKKKTERNPAEIALLVENVMAELEVTAEEDAELNRQGKPAINKLKKLSLLT 268

Query: 118 EVLSKKQLQLEFLDHGVLTLLKNWLEPLPDGSLPNINIRTAILKILNDFPIDLEQIDRRE 177
           +VL KKQLQ EFLDHGVLTLLKNWLEPLPDGSLPNINIR AIL++L DFPIDL+Q DRRE
Sbjct: 269 DVLGKKQLQTEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILRVLTDFPIDLDQYDRRE 328

Query: 178 QLKRSGLGKVIMFLSKSDEEINVNRKLTKELV 209
           QLK+SGLGKVIMFLSKSDEE N NR+L K+LV
Sbjct: 329 QLKKSGLGKVIMFLSKSDEETNSNRRLAKDLV 360


>AT1G32130.2 | Symbols: IWS1 | Transcription elongation factor
           (TFIIS) family protein | chr1:11559146-11561786 REVERSE
           LENGTH=493
          Length = 493

 Score =  230 bits (587), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 130/212 (61%), Positives = 147/212 (69%), Gaps = 4/212 (1%)

Query: 1   MWDTIAGGDSEDDQEGVRNLDDDNFIDDTGVEPG-FYGNYNEPSSXXXXXXXXXXXXXXX 59
           MW +IA  + E+D+EGVR +DDDNFIDDTG++P   YG      S               
Sbjct: 150 MWKSIAH-NPENDEEGVRTMDDDNFIDDTGLDPSERYGGDAGDRSPTHYPQAEEGEDEDE 208

Query: 60  INDLFKMGKKK--NERSPXXXXXXXXXXXXXXXXXXXXXXXXNRQGKPAINKLKKLPLLT 117
           +N+LFKMGKKK   ER+P                        NRQGKPAINKLKKL LLT
Sbjct: 209 VNNLFKMGKKKKKTERNPAEIALLVENVMAELEVTAEEDAELNRQGKPAINKLKKLSLLT 268

Query: 118 EVLSKKQLQLEFLDHGVLTLLKNWLEPLPDGSLPNINIRTAILKILNDFPIDLEQIDRRE 177
           +VL KKQLQ EFLDHGVLTLLKNWLEPLPDGSLPNINIR AIL++L DFPIDL+Q DRRE
Sbjct: 269 DVLGKKQLQTEFLDHGVLTLLKNWLEPLPDGSLPNINIRAAILRVLTDFPIDLDQYDRRE 328

Query: 178 QLKRSGLGKVIMFLSKSDEEINVNRKLTKELV 209
           QLK+SGLGKVIMFLSKSDEE N NR+L K+LV
Sbjct: 329 QLKKSGLGKVIMFLSKSDEETNSNRRLAKDLV 360


>AT4G19000.1 | Symbols: IWS2, ATIWS2 | Transcription elongation
           factor (TFIIS) family protein | chr4:10405503-10407339
           FORWARD LENGTH=406
          Length = 406

 Score =  169 bits (427), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 85/110 (77%), Positives = 94/110 (85%)

Query: 100 NRQGKPAINKLKKLPLLTEVLSKKQLQLEFLDHGVLTLLKNWLEPLPDGSLPNINIRTAI 159
           NR+GKPAINKL KLPLL E LSKK LQ EFLDHGVL LLKNWLEPLPDGSLPNINIR+A+
Sbjct: 165 NREGKPAINKLMKLPLLNETLSKKPLQGEFLDHGVLNLLKNWLEPLPDGSLPNINIRSAV 224

Query: 160 LKILNDFPIDLEQIDRREQLKRSGLGKVIMFLSKSDEEINVNRKLTKELV 209
           L ILNDF IDL+Q  RREQL +SGLGKVIMFLSKSDEE   NR+L  +++
Sbjct: 225 LMILNDFRIDLDQDSRREQLIKSGLGKVIMFLSKSDEETTPNRRLANDII 274