Miyakogusa Predicted Gene

Lj2g3v1510670.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1510670.1 Non Chatacterized Hit- tr|I1L519|I1L519_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.6221
PE=,94.12,0.000000002, ,CUFF.37828.1
         (158 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G32130.1 | Symbols: IWS1, ATIWS1 | Transcription elongation f...   217   3e-57
AT1G32130.2 | Symbols: IWS1 | Transcription elongation factor (T...   199   7e-52
AT4G19000.1 | Symbols: IWS2, ATIWS2 | Transcription elongation f...    95   2e-20

>AT1G32130.1 | Symbols: IWS1, ATIWS1 | Transcription elongation
           factor (TFIIS) family protein | chr1:11559146-11561786
           REVERSE LENGTH=502
          Length = 502

 Score =  217 bits (552), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 108/164 (65%), Positives = 130/164 (79%), Gaps = 7/164 (4%)

Query: 1   MFLSKSDEEINVNRKLAKELVDKWSRPIFNKSTRFEDMRNIEDERAPFRRPSVKKPANKA 60
           MFLSKSDEE N NR+LAK+LVDKWSRPIFNKSTRFEDMRN++++R P+RRP VKKP+NKA
Sbjct: 340 MFLSKSDEETNSNRRLAKDLVDKWSRPIFNKSTRFEDMRNLDEDRVPYRRPPVKKPSNKA 399

Query: 61  PGMQSRDSDLDLDLXXXXXXXXXXXXHAS------RPEATPMDFVIRPQSKVDPEEVRAR 114
             M+SRD D DL++                     RPEATP+DF+IRPQSK+DP+E+ AR
Sbjct: 400 T-MESRDGDFDLEIRERKTGLTSGQSSRGDRQMTMRPEATPLDFLIRPQSKIDPDEIIAR 458

Query: 115 AKQASHDQQRMKMNKKLQQLRAPKKRQLQATKLSVEGRGMIKYL 158
           AKQ S DQ+R+KMNKKLQQL+  KK++LQATK+SVEGRGMIKYL
Sbjct: 459 AKQVSQDQRRVKMNKKLQQLKGTKKKRLQATKVSVEGRGMIKYL 502


>AT1G32130.2 | Symbols: IWS1 | Transcription elongation factor
           (TFIIS) family protein | chr1:11559146-11561786 REVERSE
           LENGTH=493
          Length = 493

 Score =  199 bits (506), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 103/164 (62%), Positives = 123/164 (75%), Gaps = 16/164 (9%)

Query: 1   MFLSKSDEEINVNRKLAKELVDKWSRPIFNKSTRFEDMRNIEDERAPFRRPSVKKPANKA 60
           MFLSKSDEE N NR+LAK+LVDKWSRPIFNKSTRFEDMRN++++R P+RRP VKKP+NKA
Sbjct: 340 MFLSKSDEETNSNRRLAKDLVDKWSRPIFNKSTRFEDMRNLDEDRVPYRRPPVKKPSNKA 399

Query: 61  PGMQSRDSDLDLDLXXXXXXXXXXXXH------ASRPEATPMDFVIRPQSKVDPEEVRAR 114
             M+SRD D DL++                     RPEATP+DF+IRPQSK+DP+E+ AR
Sbjct: 400 T-MESRDGDFDLEIRERKTGLTSGQSSRGDRQMTMRPEATPLDFLIRPQSKIDPDEIIAR 458

Query: 115 AKQASHDQQRMKMNKKLQQLRAPKKRQLQATKLSVEGRGMIKYL 158
           AKQ         MNKKLQQL+  KK++LQATK+SVEGRGMIKYL
Sbjct: 459 AKQ---------MNKKLQQLKGTKKKRLQATKVSVEGRGMIKYL 493


>AT4G19000.1 | Symbols: IWS2, ATIWS2 | Transcription elongation
           factor (TFIIS) family protein | chr4:10405503-10407339
           FORWARD LENGTH=406
          Length = 406

 Score = 94.7 bits (234), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/161 (38%), Positives = 91/161 (56%), Gaps = 11/161 (6%)

Query: 1   MFLSKSDEEINVNRKLAKELVDKWSRPIFNKSTRFEDM---RNIEDERAPFRRPSVKKPA 57
           MFLSKSDEE   NR+LA ++++KW R I+NKSTR+++M     ++++R    R    K A
Sbjct: 254 MFLSKSDEETTPNRRLANDIINKWGRIIYNKSTRYDNMFTQEELDEQRQILLRRQT-KTA 312

Query: 58  NKAPGMQSRDSDLDLDLXXXXXXXXXXXXHASRPEATPMDFVIRPQSKVDPEEVRARAKQ 117
            K  G ++RD + D+DL             A  P    MDF IRP SKVD  +     ++
Sbjct: 313 PKVSGTRARDFNTDIDL--YELGTWTGRARAKIPTTMSMDFKIRPPSKVDINQ-----EE 365

Query: 118 ASHDQQRMKMNKKLQQLRAPKKRQLQATKLSVEGRGMIKYL 158
               + +M+   K +Q +  +K  +QA KLSV+GR M+KYL
Sbjct: 366 EPCSKWQMEKRHKNKQQKNIRKGGMQALKLSVDGRTMLKYL 406