Miyakogusa Predicted Gene

Lj2g3v1496130.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1496130.1 tr|G7KDN8|G7KDN8_MEDTR E3 ubiquitin-protein
ligase RNF14 OS=Medicago truncatula GN=MTR_5g029700
PE=4,68.29,0,UBC-like,Ubiquitin-conjugating enzyme/RWD-like;
RING/U-box,NULL; ZF_RING_2,Zinc finger, RING-type; R,gene.g41697.t1.1
         (528 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G32340.1 | Symbols: NHL8 | NDR1/HIN1-like 8 | chr1:11663462-1...   553   e-157
AT3G14250.1 | Symbols:  | RING/U-box superfamily protein | chr3:...    65   8e-11
AT2G16090.1 | Symbols: ARI2, ATARI2 | RING/U-box superfamily pro...    53   4e-07
AT4G34370.1 | Symbols: ATARI1, ARI1 | RING/U-box superfamily pro...    52   9e-07
AT3G27710.1 | Symbols: ARI3, ARARI3 | RING/U-box superfamily pro...    50   4e-06

>AT1G32340.1 | Symbols: NHL8 | NDR1/HIN1-like 8 |
           chr1:11663462-11666037 REVERSE LENGTH=688
          Length = 688

 Score =  553 bits (1424), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 270/547 (49%), Positives = 361/547 (65%), Gaps = 56/547 (10%)

Query: 32  SSGTKEEDDDNDIM-GRLDKLLSKIEEPGELSEEQTTINXXXXXXXXXXXXSIYGENFVT 90
           + G  E +   DIM   L  L S + EP EL+EEQ  +N             IYG N   
Sbjct: 148 ADGVDEYETKEDIMLTILKDLRSSVSEP-ELTEEQLKMNDQLQEDELLALGYIYGGNMFI 206

Query: 91  LESWKGLRCLQIHICIDVLDEIAITAKLNSSDELETLSSN-SDDFLYSFKVQYLPPIVLT 149
            + +  +R  Q+H+ ++   E  I+ KLN    L+  SS  S+DFLYSFK Q+LPPIVL 
Sbjct: 207 FDRYNDMRYFQVHVNVEATSEYTISTKLN----LQADSSKESEDFLYSFKAQHLPPIVLK 262

Query: 150 CLLPKSYPSHQPPIFTISVKWLEPIKILNLCSELDSIWEEQQGQEVIYHWVESIHGSSLS 209
           CLLPK+YPSH PP F ISV+W+ P KI +LCS+LDS+W EQ GQEV+Y W + +  SS+S
Sbjct: 263 CLLPKAYPSHLPPYFLISVQWMNPDKISSLCSKLDSLWSEQPGQEVLYQWTDWLQNSSIS 322

Query: 210 RLGFDKEITLGPYGVNRVEDKRVVSETEGIDVDIPFLRNYNNEKQHENFLKELHECCICY 269
            LGFD EI LGPYGV    DKR VS +   D DIP++R+Y++EK+H++FL+ LHECCIC+
Sbjct: 323 HLGFDNEIVLGPYGVTCSRDKRAVSGSRSPDSDIPYIRSYDDEKRHDSFLQSLHECCICF 382

Query: 270 SEYPGTEFVQLPCKHFFCRKCLQTFTQIHVKEGTISSLQCLDTKCKVMIPPGLLKHLLAD 329
           SE  G +FV+LPC+HFFC KC++T+T IHV EGT++ L+C D+KC   +PPG+LK LL D
Sbjct: 383 SESAGIDFVKLPCQHFFCLKCMKTYTDIHVTEGTVNKLKCPDSKCGETVPPGILKRLLGD 442

Query: 330 EDYDRWESMMLEKTLASMSDVVYCPRCETRCIEDEDKHAQCPECFFSFCTLCRDRRHVGI 389
           E Y+RWE++ML+KTL SM+DV YCPRCET CIEDE++ A C +C+FSFCTLC+++RHVG+
Sbjct: 443 EAYERWETLMLQKTLESMTDVAYCPRCETPCIEDEEQLALCFKCYFSFCTLCKEKRHVGV 502

Query: 390 ACMTLEMKLQILRDRKKSSELMEDQKRKELEIINEMLSMKEVQRDSQ------------- 436
           ACM+ E++LQIL++R+ SS L E+Q+RKE E+INE++S+K + + ++             
Sbjct: 503 ACMSPELRLQILQERQDSSRLGEEQRRKEKEMINEIMSVKVIMKSAKQCPSCKIAISRTG 562

Query: 437 ----------------------------PDFSCDLFAPKAPIPTWEVRLNHRQAAAQIRA 468
                                        +  C+LF P+  I  W   +N RQ   QI+A
Sbjct: 563 GCNKMVCNNCGQYFCYRCNEAITGYEHFSEGKCELF-PQEAIQEWNEMMNERQVIGQIQA 621

Query: 469 ELH-------QHGAACPNCRQFNAKIENNNHMFCWACQSHYCYLCKEVVRRYTDHYGPKG 521
           +L        Q G  CPNCRQFN K  NNNH+FCWACQ+H+CYLCK+VV++   HYGPKG
Sbjct: 622 QLFAQGGQFPQRGQLCPNCRQFNGKAGNNNHLFCWACQAHFCYLCKKVVKKSAQHYGPKG 681

Query: 522 CKQHTEG 528
           CKQHT+G
Sbjct: 682 CKQHTDG 688


>AT3G14250.1 | Symbols:  | RING/U-box superfamily protein |
           chr3:4745963-4746958 REVERSE LENGTH=303
          Length = 303

 Score = 65.5 bits (158), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 99/254 (38%), Gaps = 65/254 (25%)

Query: 265 CCICYSEYPGTEFVQ--LPCKHFFCRKCLQTFTQIHVKEGTISSLQCLDTKCKVMIPPGL 322
           C IC  E P ++  +    C H +C  C   +    +KE   S ++C D +C  +I P  
Sbjct: 95  CMICMDEKPSSDIFRGTTNCTHAYCTDCTVRYVATKIKENA-SRIKCPDVECTRLIEPYT 153

Query: 323 LKHLLADEDYDRWESMMLEKTLASMSDVVYCP--RCETRCIEDEDKHA-----QCPECFF 375
            + L+  + +DRWE ++ E  ++S  D  YCP   C    + +E+  A     +C  C  
Sbjct: 154 CRDLIPKDVFDRWEKILCESLISSW-DKFYCPFKDCSAMMVNNENGDANVTQTECRSCHR 212

Query: 376 SFCTLCRDRRHVGIACMTLEMKLQILRDRKKSSELMEDQKRKELEIINEMLSMKEVQRDS 435
            FC  C+   H GI C   +   +    +KKSS+  ED       ++ +M   K+ +R  
Sbjct: 213 LFCVQCKVTWHAGIGCDEFQ---RFGNTKKKSSD--EDDA-----LLIQMAKNKQWRR-- 260

Query: 436 QPDFSCDLFAPKAPIPTWEVRLNHRQAAAQIRAELHQHGAACPNCRQFNAKIENNNHMFC 495
                                                    CP+C+ +  K+E   H+ C
Sbjct: 261 -----------------------------------------CPSCKFYVDKVEGCQHIKC 279

Query: 496 WACQSHYCYLCKEV 509
             C   +CY C  V
Sbjct: 280 -RCGYQFCYGCGSV 292


>AT2G16090.1 | Symbols: ARI2, ATARI2 | RING/U-box superfamily
           protein | chr2:6987367-6989822 REVERSE LENGTH=593
          Length = 593

 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 32/138 (23%), Positives = 58/138 (42%), Gaps = 9/138 (6%)

Query: 267 ICYSEYPGTEFVQLPCKHFFCRKCLQTFTQIHVKEGTISSLQCLDTKCKVMIPPGLLKHL 326
           IC  + PG +  ++ C H FC  C      + + EG    + C+  KC  +    +++ L
Sbjct: 126 ICVEDVPGYQLTRMDCGHSFCNNCWTGHFTVKINEGQSKRIICMAHKCNAICDEDVVRAL 185

Query: 327 LADEDYD---RWESMMLEKTLASMSDVVYCPRC-----ETRCIEDEDKHAQCPECFFSFC 378
           ++    D   +++  +LE  +     V +CP         R  +DE    +C  C   FC
Sbjct: 186 VSKSQPDLAEKFDRFLLESYIEDNKMVKWCPSTPHCGNAIRVEDDELCEVECS-CGLQFC 244

Query: 379 TLCRDRRHVGIACMTLEM 396
             C  + H   +C+  E+
Sbjct: 245 FSCSSQAHSPCSCVMWEL 262


>AT4G34370.1 | Symbols: ATARI1, ARI1 | RING/U-box superfamily
           protein | chr4:16434547-16437037 FORWARD LENGTH=597
          Length = 597

 Score = 52.4 bits (124), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 33/151 (21%), Positives = 66/151 (43%), Gaps = 9/151 (5%)

Query: 265 CCICYSEYPGTEFVQLPCKHFFCRKCLQTFTQIHVKEGTISSLQCLDTKCKVMIPPGLLK 324
           C +C  + PG    ++ C H FC  C      + + EG    ++C+  +C  +    +++
Sbjct: 123 CDVCMEDLPGDHMTRMDCGHCFCNNCWTEHFTVQINEGQSKRIRCMAHQCNAICDEDIVR 182

Query: 325 HLLADEDYD---RWESMMLEKTLASMSDVVYC---PRCETRCIEDEDK--HAQCPECFFS 376
            L++ +  D   +++  +LE  +     V +C   P C      ++DK    +C  C   
Sbjct: 183 SLVSKKRPDLAAKFDRYLLESYIEDNRMVKWCPSTPHCGNAIRAEDDKLCEVECS-CGLQ 241

Query: 377 FCTLCRDRRHVGIACMTLEMKLQILRDRKKS 407
           FC  C  + H   +C+  E+  +  RD  ++
Sbjct: 242 FCFSCLCQAHSPCSCLMWELWRKKCRDESET 272


>AT3G27710.1 | Symbols: ARI3, ARARI3 | RING/U-box superfamily
           protein | chr3:10269304-10270917 FORWARD LENGTH=537
          Length = 537

 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/145 (22%), Positives = 63/145 (43%), Gaps = 9/145 (6%)

Query: 260 KELHECCICY-SEYPGTEFVQLPCKHFFCRKCLQTFTQIHVKEGTISSLQCLDTKCKVMI 318
           K+  +C +C   + P     ++ C H FC  C      + + EG    + C+  +CK + 
Sbjct: 116 KKTMKCDVCMEDDLPSNVMTRMECGHRFCNDCWIGHFTVKINEGESKRILCMAHECKAIC 175

Query: 319 PPGLLKHLLADEDYDRWESMMLEKTLASMSDVVYC---PRCETRCIEDEDKH----AQCP 371
              +++ L++ E  DR++  ++E  +   + V +C   P C +   + ED H      C 
Sbjct: 176 DEDVVRKLVSPELADRYDRFLIESYVEDNNMVKWCPSKPHCGSAIRKIEDGHDVVEVGCS 235

Query: 372 ECFFSFCTLCRDRRHVGIACMTLEM 396
            C   FC  C    H   +C+  ++
Sbjct: 236 -CGLQFCFSCLSESHSPCSCLMWKL 259