Miyakogusa Predicted Gene
- Lj2g3v1496120.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v1496120.1 Non Chatacterized Hit- tr|B8ATJ8|B8ATJ8_ORYSI
Putative uncharacterized protein OS=Oryza sativa
subsp,63.41,0.000000003,In Between Ring fingers,Zinc finger,
C6HC-type; RING/U-box,NULL; IBR,Zinc finger, C6HC-type;
SUBFAMI,CUFF.37273.1
(256 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G32340.1 | Symbols: NHL8 | NDR1/HIN1-like 8 | chr1:11663462-1... 370 e-103
AT3G14250.1 | Symbols: | RING/U-box superfamily protein | chr3:... 63 2e-10
AT3G27710.1 | Symbols: ARI3, ARARI3 | RING/U-box superfamily pro... 52 5e-07
AT3G27720.1 | Symbols: ARI4, ATARI4 | IBR domain containing prot... 48 6e-06
AT3G53690.1 | Symbols: | RING/U-box superfamily protein | chr3:... 47 9e-06
>AT1G32340.1 | Symbols: NHL8 | NDR1/HIN1-like 8 |
chr1:11663462-11666037 REVERSE LENGTH=688
Length = 688
Score = 370 bits (950), Expect = e-103, Method: Compositional matrix adjust.
Identities = 165/261 (63%), Positives = 212/261 (81%), Gaps = 9/261 (3%)
Query: 2 IPPGLLKHLLADEDYERWESMMLEKTLASMSDVVHCPRCETPCIEDEDHHAQCPQCFFSF 61
+PPG+LK LL DE YERWE++ML+KTL SM+DV +CPRCETPCIEDE+ A C +C+FSF
Sbjct: 431 VPPGILKRLLGDEAYERWETLMLQKTLESMTDVAYCPRCETPCIEDEEQLALCFKCYFSF 490
Query: 62 CTLCRERRHVGIACMTLEMKIQILKDRQNLSQLKGDQKRKELEMINEMLSMKEIHRDSKL 121
CTLC+E+RHVG+ACM+ E+++QIL++RQ+ S+L +Q+RKE EMINE++S+K I + +K
Sbjct: 491 CTLCKEKRHVGVACMSPELRLQILQERQDSSRLGEEQRRKEKEMINEIMSVKVIMKSAKQ 550
Query: 122 CPSCDMAISRTEGCNKMKCGNCGQYFCYRCNKAIDETDPYGHFRDGSCELFPREMIDAWQ 181
CPSC +AISRT GCNKM C NCGQYFCYRCN+AI Y HF +G CELFP+E I W
Sbjct: 551 CPSCKIAISRTGGCNKMVCNNCGQYFCYRCNEAI---TGYEHFSEGKCELFPQEAIQEWN 607
Query: 182 ENLNARQLVGQVQAEL------FPQRGTACPSCRQFNAKIGNNNHMFCWACQSHYCYLCN 235
E +N RQ++GQ+QA+L FPQRG CP+CRQFN K GNNNH+FCWACQ+H+CYLC
Sbjct: 608 EMMNERQVIGQIQAQLFAQGGQFPQRGQLCPNCRQFNGKAGNNNHLFCWACQAHFCYLCK 667
Query: 236 EVVRRGTKHYGPKGCKQHSEG 256
+VV++ +HYGPKGCKQH++G
Sbjct: 668 KVVKKSAQHYGPKGCKQHTDG 688
>AT3G14250.1 | Symbols: | RING/U-box superfamily protein |
chr3:4745963-4746958 REVERSE LENGTH=303
Length = 303
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 70/161 (43%), Gaps = 23/161 (14%)
Query: 1 MIPPGLLKHLLADEDYERWESMMLEKTLASMSDVVHCP--RCETPCIEDEDHHA-----Q 53
+I P + L+ + ++RWE ++ E ++S D +CP C + +E+ A +
Sbjct: 148 LIEPYTCRDLIPKDVFDRWEKILCESLISSW-DKFYCPFKDCSAMMVNNENGDANVTQTE 206
Query: 54 CPQCFFSFCTLCRERRHVGIACMTLEMKIQILKDRQNLSQLKGDQKRKELEMINEMLSMK 113
C C FC C+ H GI C Q G+ K+K + + +L
Sbjct: 207 CRSCHRLFCVQCKVTWHAGIGCDEF--------------QRFGNTKKKSSDEDDALLIQM 252
Query: 114 EIHRDSKLCPSCDMAISRTEGCNKMKCGNCGQYFCYRCNKA 154
++ + CPSC + + EGC +KC CG FCY C
Sbjct: 253 AKNKQWRRCPSCKFYVDKVEGCQHIKC-RCGYQFCYGCGSV 292
>AT3G27710.1 | Symbols: ARI3, ARARI3 | RING/U-box superfamily
protein | chr3:10269304-10270917 FORWARD LENGTH=537
Length = 537
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 74/178 (41%), Gaps = 27/178 (15%)
Query: 6 LLKHLLADEDYERWESMMLEKTLASMSDVVHCPR---CETPCIEDEDHHAQCP---QCFF 59
+++ L++ E +R++ ++E + + V CP C + + ED H C
Sbjct: 179 VVRKLVSPELADRYDRFLIESYVEDNNMVKWCPSKPHCGSAIRKIEDGHDVVEVGCSCGL 238
Query: 60 SFCTLCRERRHVGIACMTLEMKIQILKDRQNLSQLKGDQKRKELEMINEMLSMKEIHRDS 119
FC C H +C+ ++ + +D E E +N I ++
Sbjct: 239 QFCFSCLSESHSPCSCLMWKLWKKKCED--------------ESETVNW------ITVNT 278
Query: 120 KLCPSCDMAISRTEGCNKMKCGNCGQYFCYRCNKAIDETDPYGHFRDGSCELFPREMI 177
KLCP C I + +GCN M C CGQ+FC+ C +A Y SC + E +
Sbjct: 279 KLCPKCSKPIQKRDGCNLMTC-KCGQHFCWLCGQATGRDHTYTSIAGHSCGRYKDEKV 335
>AT3G27720.1 | Symbols: ARI4, ATARI4 | IBR domain containing protein
| chr3:10271876-10273621 FORWARD LENGTH=493
Length = 493
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 72/176 (40%), Gaps = 31/176 (17%)
Query: 10 LLADEDYERWESMMLEKTLASMSDVVHCPRCETP-------CIEDEDHHAQCP-QCFFSF 61
L++ E E+++ ++E + + V CP TP I+D+ + C F
Sbjct: 143 LVSTELAEKFDRFLIESYVEDNNMVKWCP--STPHCGNAIRNIKDDGDVDEVECSCGLQF 200
Query: 62 CTLCRERRHVGIACMTLEMKIQILKDRQNLSQLKGDQKRKELEMINEMLSMKEIHRDSKL 121
C C H +C+ ++ + +D E E +N M ++KL
Sbjct: 201 CFSCLSESHSPCSCLMWKLWKKKCED--------------ESETVNWMTV------NTKL 240
Query: 122 CPSCDMAISRTEGCNKMKCGNCGQYFCYRCNKAIDETDPYGHFRDGSCELFPREMI 177
CP C I + +GCN M C CGQ+FC+ C +A Y SC + E +
Sbjct: 241 CPKCSKPIQKRDGCNHMTC-KCGQHFCWLCGQATGRDHSYSSIAGHSCGRYKEEKV 295
>AT3G53690.1 | Symbols: | RING/U-box superfamily protein |
chr3:19898997-19900044 REVERSE LENGTH=320
Length = 320
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 64/157 (40%), Gaps = 25/157 (15%)
Query: 2 IPPGLLKHLLADEDYERWESMMLEKTLASMSDVVHCPR--CETPCIEDEDH----HAQCP 55
+ P + +L E ++RW + E + S +CP C +E ++CP
Sbjct: 168 LEPDQCRQILPKEVFDRWGDALCEAVVMR-SKKFYCPYKDCSALVFLEESEVKMKDSECP 226
Query: 56 QCFFSFCTLCRERRHVGIACMTLEMKIQILKDRQNLSQLKGDQKRKELEMINEMLSMKEI 115
C C C + H + C + +L +++ ++ ++ M K+
Sbjct: 227 HCHRMVCVECGTQWHPEMTC-------------EEFQKLAANERGRDDILLATMAKQKKW 273
Query: 116 HRDSKLCPSCDMAISRTEGCNKMKCGNCGQYFCYRCN 152
R CPSC I +++GC MKC CG FCY C
Sbjct: 274 KR----CPSCKFYIEKSQGCLYMKC-RCGLAFCYNCG 305