Miyakogusa Predicted Gene

Lj2g3v1472980.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1472980.1 tr|B8CEW1|B8CEW1_THAPS Valine--tRNA ligase-like
protein OS=Thalassiosira pseudonana
GN=THAPSDRAFT_42,39.5,3e-19,tRNA-synt_1,Aminoacyl-tRNA synthetase,
class Ia; no description,NULL; Nucleotidylyl
transferase,NULL,CUFF.37255.1
         (119 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G16715.1 | Symbols: EMB2247 | ATP binding;valine-tRNA ligases...   199   5e-52
AT1G14610.1 | Symbols: TWN2, VALRS | valyl-tRNA synthetase / val...    53   5e-08

>AT5G16715.1 | Symbols: EMB2247 | ATP binding;valine-tRNA
           ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP
           binding;aminoacyl-tRNA ligases | chr5:5485353-5493229
           FORWARD LENGTH=974
          Length = 974

 Score =  199 bits (505), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 92/119 (77%), Positives = 110/119 (92%)

Query: 1   MSKTLGNVIDPIDTIKDFGTDALRFTLALGTAGQDLNLSSERLTSNKAFTNKLWNAGKFI 60
           MSK+LGNVIDP+DTIKDFGTDALRFT+ALGTAGQDLNLS+ERLT+NKAFTNKLWNAGKF+
Sbjct: 599 MSKSLGNVIDPLDTIKDFGTDALRFTIALGTAGQDLNLSTERLTANKAFTNKLWNAGKFV 658

Query: 61  LQNLPNENDTSAWENILSHKFDGEGSVLNLPLPECWVVSKLHLLIDSVSASYDKFYFGE 119
           L +LP+ +DTSAWEN+L  K D E ++L+LPLPECW VSKLH+LIDSV+ASY+K +FG+
Sbjct: 659 LHSLPSLSDTSAWENLLDLKLDKEETLLSLPLPECWAVSKLHILIDSVTASYEKLFFGD 717


>AT1G14610.1 | Symbols: TWN2, VALRS | valyl-tRNA synthetase /
           valine--tRNA ligase (VALRS) | chr1:5008502-5014486
           REVERSE LENGTH=1108
          Length = 1108

 Score = 52.8 bits (125), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 48/157 (30%), Positives = 63/157 (40%), Gaps = 49/157 (31%)

Query: 1   MSKTLGNVIDPIDTI------------------------------KDF-------GTDAL 23
           MSK+LGNVIDP++ I                              KDF       GTDAL
Sbjct: 696 MSKSLGNVIDPLEVINGVTLEGLHKRLEEGNLDPKEVIVAKEGQVKDFPNGIPECGTDAL 755

Query: 24  RFTLALGTAGQD-LNLSSERLTSNKAFTNKLWNAGKFILQNLPNENDTSAWENILSHKFD 82
           RF L   TA  D +NL   R+   + + NKLWNA +F +  L    D       LS +  
Sbjct: 756 RFALVSYTAQSDKINLDILRVVGYRQWCNKLWNAVRFAMMKL---GDGYTPPQTLSPE-- 810

Query: 83  GEGSVLNLPLPECWVVSKLHLLIDSVSASYDKFYFGE 119
                  +P    W++S L+  I     S D F F +
Sbjct: 811 ------TMPFSCQWILSVLNKAISKTVVSLDAFEFSD 841