Miyakogusa Predicted Gene

Lj2g3v1471910.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1471910.1 CUFF.37247.1
         (303 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G72210.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...   207   8e-54
AT1G22490.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...   204   5e-53
AT5G46690.1 | Symbols: bHLH071 | beta HLH protein 71 | chr5:1894...   181   4e-46
AT4G01460.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...   153   1e-37
AT3G24140.1 | Symbols: FMA | basic helix-loop-helix (bHLH) DNA-b...   144   6e-35
AT5G65320.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...   142   3e-34
AT2G46810.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...   133   2e-31
AT3G61950.2 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...   120   9e-28
AT3G61950.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...   120   1e-27
AT3G06120.1 | Symbols: MUTE | basic helix-loop-helix (bHLH) DNA-...   102   2e-22
AT5G53210.1 | Symbols: SPCH | basic helix-loop-helix (bHLH) DNA-...   101   6e-22
AT1G49770.1 | Symbols: RGE1, ZOU | basic helix-loop-helix (bHLH)...    49   6e-06

>AT1G72210.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr1:27180066-27182268 FORWARD
           LENGTH=320
          Length = 320

 Score =  207 bits (527), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 109/213 (51%), Positives = 140/213 (65%), Gaps = 10/213 (4%)

Query: 90  EEAETQRMTHITVERNRRKQMNEHLAVLRSLMPESYVQRGDQASIVSGAIEFVKELEHLM 149
           EE E QRMTHI VERNRRKQMNE+LAVLRSLMP  Y QRGDQASIV GAI ++KELEH +
Sbjct: 118 EEIENQRMTHIAVERNRRKQMNEYLAVLRSLMPPYYAQRGDQASIVGGAINYLKELEHHL 177

Query: 150 QSLEAKKFQLLHQGVALTSTEEDKAISNSMIMTPPFANFFVHPQYTWSLAHKYXXXXXXX 209
           QS+E      +      T    D+  + S   + PF++FF  PQY+              
Sbjct: 178 QSMEPP----VKTATEDTGAGHDQTKTTSASSSGPFSDFFAFPQYS------NRPTSAAA 227

Query: 210 XXXXXXXXVTLIETHANLRILTRRSPRKLSKLVAGFQALFLTILHLNVTTMDPLVLFSIS 269
                   VT++E+HA+L+IL ++ PR+L KLV+  Q+L LT+LHLNVTT D  VL+SIS
Sbjct: 228 AEGMAEIEVTMVESHASLKILAKKRPRQLLKLVSSIQSLRLTLLHLNVTTRDDSVLYSIS 287

Query: 270 TKVEEGCQLGSVDDIATAVHNLLRMIDDEASLC 302
            KVEEG QL +V+DIA AV+ +LR I++E+S  
Sbjct: 288 VKVEEGSQLNTVEDIAAAVNQILRRIEEESSFS 320


>AT1G22490.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr1:7938448-7940489 REVERSE
           LENGTH=304
          Length = 304

 Score =  204 bits (520), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 108/209 (51%), Positives = 141/209 (67%), Gaps = 13/209 (6%)

Query: 90  EEAETQRMTHITVERNRRKQMNEHLAVLRSLMPESYVQRGDQASIVSGAIEFVKELEHLM 149
           EE E QRMTHI VERNRRKQMNE+LAVLRSLMP SY QRGDQASIV GAI +VKELEH++
Sbjct: 108 EEIENQRMTHIAVERNRRKQMNEYLAVLRSLMPSSYAQRGDQASIVGGAINYVKELEHIL 167

Query: 150 QSLEAKKFQLLHQGVALTSTEEDKAISNSMIMTPPFANFFVHPQYTWSLAHKYXXXXXXX 209
           QS+E K+             + DK  ++S++   PF +FF  PQY+     K        
Sbjct: 168 QSMEPKR-------TRTHDPKGDKTSTSSLVG--PFTDFFSFPQYST----KSSSDVPES 214

Query: 210 XXXXXXXXVTLIETHANLRILTRRSPRKLSKLVAGFQALFLTILHLNVTTMDPLVLFSIS 269
                   VT+ E+HAN++I+T++ PR+L KL+   Q+L LT+LHLNVTT+   +L+SIS
Sbjct: 215 SSSPAEIEVTVAESHANIKIMTKKKPRQLLKLITSLQSLRLTLLHLNVTTLHNSILYSIS 274

Query: 270 TKVEEGCQLGSVDDIATAVHNLLRMIDDE 298
            +VEEG QL +VDDIATA++  +R I +E
Sbjct: 275 VRVEEGSQLNTVDDIATALNQTIRRIQEE 303


>AT5G46690.1 | Symbols: bHLH071 | beta HLH protein 71 |
           chr5:18945639-18947434 FORWARD LENGTH=327
          Length = 327

 Score =  181 bits (460), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 117/230 (50%), Positives = 148/230 (64%), Gaps = 20/230 (8%)

Query: 90  EEAETQRMTHITVERNRRKQMNEHLAVLRSLMPESYVQRGDQASIVSGAIEFVKELEHLM 149
           EEAE QRMTHI VERNRR+QMN+HL+VLRSLMP+ +  +GDQASIV GAI+F+KELEH +
Sbjct: 81  EEAENQRMTHIAVERNRRRQMNQHLSVLRSLMPQPFAHKGDQASIVGGAIDFIKELEHKL 140

Query: 150 QSLEAKKFQ--LLHQGVALTSTEEDKAISNSMIMTP---PFANFFVHPQYTWSLAHKYXX 204
            SLEA+K     L+Q V  +ST +D          P     + FF+H  Y  S  ++   
Sbjct: 141 LSLEAQKHHNAKLNQSVT-SSTSQDSNGEQENPHQPSSLSLSQFFLH-SYDPSQENR-NG 197

Query: 205 XXXXXXXXXXXXXVTLIETHANLRILTRR-----------SPRKLSKLVAGFQALFLTIL 253
                        VTLIETHAN+RIL+RR            P +LSKLVA  Q+L L+IL
Sbjct: 198 STSSVKTPMEDLEVTLIETHANIRILSRRRGFRWSTLATTKPPQLSKLVASLQSLSLSIL 257

Query: 254 HLNVTTMDPLVLFSISTKVEEGCQLGSVDDIATAVHNLLRMIDDEASLCC 303
           HL+VTT+D   ++SIS KVEE CQL SVDDIA AVH++L +I++E   CC
Sbjct: 258 HLSVTTLDNYAIYSISAKVEESCQLSSVDDIAGAVHHMLSIIEEEP-FCC 306


>AT4G01460.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr4:621334-622697 FORWARD
           LENGTH=315
          Length = 315

 Score =  153 bits (387), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 84/209 (40%), Positives = 121/209 (57%), Gaps = 10/209 (4%)

Query: 90  EEAETQRMTHITVERNRRKQMNEHLAVLRSLMPESYVQRGDQASIVSGAIEFVKELEHLM 149
           +E E QRMTHI VERNRR+QMNEHL  LRSLMP S++QRGDQASIV GAI+F+KELE L+
Sbjct: 108 DEVENQRMTHIAVERNRRRQMNEHLNSLRSLMPPSFLQRGDQASIVGGAIDFIKELEQLL 167

Query: 150 QSLEAKKFQLLHQGVALTSTEEDKAISNSMIMTPPFANFFVHPQYTWSLAHKYXXXXXXX 209
           QSLEA+K +        T++    +       +    +      +T              
Sbjct: 168 QSLEAEKRKDGTDETPKTASCSSSSSLACTNSSISSVSTTSENGFTARFGGG-------- 219

Query: 210 XXXXXXXXVTLIETHANLRILTRRSPRKLSKLVAGFQALFLTILHLNVTTMDPLVLFSIS 269
                    T+I+ H +L++  +R  R++ K +   + L L ILHL +++    V++S +
Sbjct: 220 --DTTEVEATVIQNHVSLKVRCKRGKRQILKAIVSIEELKLAILHLTISSSFDFVIYSFN 277

Query: 270 TKVEEGCQLGSVDDIATAVHNLLRMIDDE 298
            K+E+GC+LGS D+IATAVH +   I+ E
Sbjct: 278 LKMEDGCKLGSADEIATAVHQIFEQINGE 306


>AT3G24140.1 | Symbols: FMA | basic helix-loop-helix (bHLH)
           DNA-binding superfamily protein | chr3:8715525-8717772
           REVERSE LENGTH=414
          Length = 414

 Score =  144 bits (364), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 86/208 (41%), Positives = 118/208 (56%), Gaps = 3/208 (1%)

Query: 90  EEAETQRMTHITVERNRRKQMNEHLAVLRSLMPESYVQRGDQASIVSGAIEFVKELEHLM 149
           EE E+QRMTHI VERNRRKQMNEHL VLRSLMP SYVQRGDQASI+ GAIEFV+ELE L+
Sbjct: 190 EEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLL 249

Query: 150 QSLEAKKFQ--LLHQGVALTSTEEDKAISNSMIMTPPFANFFVHPQYTWSLAHKYXXXXX 207
           Q LE++K +  L   G  +T+T    +   + +                           
Sbjct: 250 QCLESQKRRRILGETGRDMTTTTTSSSSPITTVANQAQPLIITGNVTELEGGGGLREETA 309

Query: 208 XXXXXXXXXXVTLIETHANLRILTRRSPRKLSKLVAGFQALFLTILHLNVTTMDPLVLFS 267
                     V L+   A ++IL+RR P +L K +A  + L L+ILH N+TTM+  VL+S
Sbjct: 310 ENKSCLADVEVKLLGFDAMIKILSRRRPGQLIKTIAALEDLHLSILHTNITTMEQTVLYS 369

Query: 268 ISTKVEEGCQLGSVDDIATAVHNLLRMI 295
            + K+    +  + +DIA+++  +   I
Sbjct: 370 FNVKITSETRF-TAEDIASSIQQIFSFI 396


>AT5G65320.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr5:26107368-26108640 REVERSE
           LENGTH=296
          Length = 296

 Score =  142 bits (358), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 83/217 (38%), Positives = 124/217 (57%), Gaps = 26/217 (11%)

Query: 91  EAETQRMTHITVERNRRKQMNEHLAVLRSLMPESYVQRGDQASIVSGAIEFVKELEHLMQ 150
           + E QRM HI VERNRRKQMN  L++L+S+MP SY Q  DQASI+ G I ++K+LE  +Q
Sbjct: 96  DKENQRMNHIAVERNRRKQMNHFLSILKSMMPLSYSQPNDQASIIEGTISYLKKLEQRLQ 155

Query: 151 SLEAKKFQLLHQGVALTSTEEDKAISNSMIMTPPFANFFVHPQY--------TWSLAHKY 202
           SLEA+          L +T+ +++ +        F++FF+ PQY          + +   
Sbjct: 156 SLEAQ----------LKATKLNQSPN-------IFSDFFMFPQYSTATATATATASSSSS 198

Query: 203 XXXXXXXXXXXXXXXVTLIETHANLRILTRRSPRKLSKLVAGFQALFLTILHLNVTTMDP 262
                          VT++E HAN+++LT+  PR L K++  F +L L+ LHLN+TT   
Sbjct: 199 SHHHHKRLEVVADVEVTMVERHANIKVLTKTQPRLLFKIINEFNSLGLSTLHLNLTTSKD 258

Query: 263 LVLFSISTKVEEGCQLG-SVDDIATAVHNLLRMIDDE 298
           + LF+ S KVE  CQL  S +++A  VH ++R +  E
Sbjct: 259 MSLFTFSVKVEADCQLTPSGNEVANTVHEVVRRVHKE 295


>AT2G46810.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr2:19239694-19242373 FORWARD
           LENGTH=371
          Length = 371

 Score =  133 bits (334), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 80/204 (39%), Positives = 111/204 (54%), Gaps = 21/204 (10%)

Query: 90  EEAETQRMTHITVERNRRKQMNEHLAVLRSLMPESYVQRGDQASIVSGAIEFVKELEHLM 149
           EE E+QRMTHI VERNRR+QMN HL  LRS++P SY+QRGDQASIV GAI+FVK LE  +
Sbjct: 186 EEIESQRMTHIAVERNRRRQMNVHLNSLRSIIPSSYIQRGDQASIVGGAIDFVKILEQQL 245

Query: 150 QSLEAKKFQLLHQGVALTSTEEDKAISNSMIMTPPFANFFVHPQYTWSLAHKYXXXXXXX 209
           QSLEA+K +            ED ++ N                     ++K        
Sbjct: 246 QSLEAQK-RSQQSDDNKEQIPEDNSLRNIS-------------------SNKLRASNKEE 285

Query: 210 XXXXXXXXVTLIETHANLRILTRRSPRKLSKLVAGFQALFLTILHLNVTT-MDPLVLFSI 268
                    T+IE+H NL+I   R   +L + +   + L  T+LHLN+T+  +  V +S 
Sbjct: 286 QSSKLKIEATVIESHVNLKIQCTRKQGQLLRSIILLEKLRFTVLHLNITSPTNTSVSYSF 345

Query: 269 STKVEEGCQLGSVDDIATAVHNLL 292
           + K+E+ C LGS D+I  A+  + 
Sbjct: 346 NLKMEDECNLGSADEITAAIRQIF 369


>AT3G61950.2 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr3:22940231-22941332 FORWARD
           LENGTH=307
          Length = 307

 Score =  120 bits (302), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 76/205 (37%), Positives = 110/205 (53%), Gaps = 24/205 (11%)

Query: 90  EEAETQRMTHITVERNRRKQMNEHLAVLRSLMPESYVQRGDQASIVSGAIEFVKELEHLM 149
           EE E QR+ HI VERNRR+QMNEH+  LR+L+P SY+QRGDQASIV GAI +VK LE ++
Sbjct: 120 EEIENQRINHIAVERNRRRQMNEHINSLRALLPPSYIQRGDQASIVGGAINYVKVLEQII 179

Query: 150 QSLEAKKFQLLHQGVALTSTEEDKAISNSMIMTPPFANFF-VHPQYTWSLAHKYXXXXXX 208
           QSLE++K                +  SNS ++     +   +     W+           
Sbjct: 180 QSLESQK--------------RTQQQSNSEVVENALNHLSGISSNDLWT--------TLE 217

Query: 209 XXXXXXXXXVTLIETHANLRILTRRSPRKLSKLVAGFQALFLTILHLNVTT-MDPLVLFS 267
                     T+I+ H +L++   +   +L K +   + L LT+LHLN+TT     V +S
Sbjct: 218 DQTCIPKIEATVIQNHVSLKVQCEKKQGQLLKGIISLEKLKLTVLHLNITTSSHSSVSYS 277

Query: 268 ISTKVEEGCQLGSVDDIATAVHNLL 292
            + K+E+ C L S D+I  AVH + 
Sbjct: 278 FNLKMEDECDLESADEITAAVHRIF 302


>AT3G61950.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr3:22939661-22941332 FORWARD
           LENGTH=358
          Length = 358

 Score =  120 bits (302), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 76/205 (37%), Positives = 110/205 (53%), Gaps = 24/205 (11%)

Query: 90  EEAETQRMTHITVERNRRKQMNEHLAVLRSLMPESYVQRGDQASIVSGAIEFVKELEHLM 149
           EE E QR+ HI VERNRR+QMNEH+  LR+L+P SY+QRGDQASIV GAI +VK LE ++
Sbjct: 171 EEIENQRINHIAVERNRRRQMNEHINSLRALLPPSYIQRGDQASIVGGAINYVKVLEQII 230

Query: 150 QSLEAKKFQLLHQGVALTSTEEDKAISNSMIMTPPFANFF-VHPQYTWSLAHKYXXXXXX 208
           QSLE++K                +  SNS ++     +   +     W+           
Sbjct: 231 QSLESQK--------------RTQQQSNSEVVENALNHLSGISSNDLWT--------TLE 268

Query: 209 XXXXXXXXXVTLIETHANLRILTRRSPRKLSKLVAGFQALFLTILHLNVTT-MDPLVLFS 267
                     T+I+ H +L++   +   +L K +   + L LT+LHLN+TT     V +S
Sbjct: 269 DQTCIPKIEATVIQNHVSLKVQCEKKQGQLLKGIISLEKLKLTVLHLNITTSSHSSVSYS 328

Query: 268 ISTKVEEGCQLGSVDDIATAVHNLL 292
            + K+E+ C L S D+I  AVH + 
Sbjct: 329 FNLKMEDECDLESADEITAAVHRIF 353


>AT3G06120.1 | Symbols: MUTE | basic helix-loop-helix (bHLH)
           DNA-binding superfamily protein | chr3:1846531-1848016
           FORWARD LENGTH=202
          Length = 202

 Score =  102 bits (255), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/212 (33%), Positives = 108/212 (50%), Gaps = 24/212 (11%)

Query: 97  MTHITVERNRRKQMNEHLAVLRSLMPESYVQRGDQASIVSGAIEFVKELEHLMQSLEAKK 156
           M+HI VERNRR+QMNEHL  LRSL P  Y++RGDQASI+ G IEF+KEL+ L+Q LE+KK
Sbjct: 1   MSHIAVERNRRRQMNEHLKSLRSLTPCFYIKRGDQASIIGGVIEFIKELQQLVQVLESKK 60

Query: 157 ---------FQLLHQGVALTSTEEDKAISNSMIMTPPFANFFVHPQYTWSLAHKYXXXXX 207
                    F   HQ +  +S         +     PF+   +    T S    +     
Sbjct: 61  RRKTLNRPSFPYDHQTIEPSSL-------GAATTRVPFSR--IENVMTTS---TFKEVGA 108

Query: 208 XXXXXXXXXXVTLIETHANLRILTRRSPRKLSKLVAGFQALFLTILHLNVTTMDPLVLFS 267
                       +  ++  LR+++RR   +L K+++  + L   +LHLN+++M+  VL+ 
Sbjct: 109 CCNSPHANVEAKISGSNVVLRVVSRRIVGQLVKIISVLEKLSFQVLHLNISSMEETVLYF 168

Query: 268 ISTKVEEGCQLGSVDDIATAVHNLLRMIDDEA 299
              K+   C L S++++   V      + DE 
Sbjct: 169 FVVKIGLECHL-SLEELTLEVQK--SFVSDEV 197


>AT5G53210.1 | Symbols: SPCH | basic helix-loop-helix (bHLH)
           DNA-binding superfamily protein | chr5:21586606-21588941
           REVERSE LENGTH=364
          Length = 364

 Score =  101 bits (251), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 44/62 (70%), Positives = 55/62 (88%)

Query: 95  QRMTHITVERNRRKQMNEHLAVLRSLMPESYVQRGDQASIVSGAIEFVKELEHLMQSLEA 154
           Q+M+H+TVERNRRKQMNEHL VLRSLMP  YV+RGDQASI+ G +E++ EL+ ++QSLEA
Sbjct: 100 QKMSHVTVERNRRKQMNEHLTVLRSLMPCFYVKRGDQASIIGGVVEYISELQQVLQSLEA 159

Query: 155 KK 156
           KK
Sbjct: 160 KK 161


>AT1G49770.1 | Symbols: RGE1, ZOU | basic helix-loop-helix (bHLH)
           DNA-binding superfamily protein | chr1:18424578-18426531
           FORWARD LENGTH=308
          Length = 308

 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 1/76 (1%)

Query: 90  EEAETQRMTHITVERNRRKQMNEHLAVLRSLMPESYVQRGDQASIVSGAIEFVKELEHLM 149
           EE       HI  ER RRK+M +  + L +L+P+    + D+++IV  A+  +K LE  +
Sbjct: 65  EEESPDHEIHIWTERERRKKMRDMFSKLHALLPQ-LPPKADKSTIVDEAVSSIKSLEQTL 123

Query: 150 QSLEAKKFQLLHQGVA 165
           Q LE +K + L    A
Sbjct: 124 QKLEMQKLEKLQYSSA 139