Miyakogusa Predicted Gene
- Lj2g3v1471890.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v1471890.1 tr|B6SS58|B6SS58_MAIZE Ribonucleoprotein OS=Zea
mays PE=2 SV=1,38.2,0.000000005,RRM_1,RNA recognition motif domain;
RRM_6,NULL; SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,NULL; no
,CUFF.37245.1
(285 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G35410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 233 1e-61
AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding pr... 115 5e-26
AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 3... 114 8e-26
AT4G09040.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 110 9e-25
AT4G09040.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 110 1e-24
AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RN... 108 3e-24
AT1G60000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 106 2e-23
AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 105 4e-23
AT1G01080.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 89 3e-18
AT1G01080.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 88 7e-18
AT1G49760.2 | Symbols: PAB8 | poly(A) binding protein 8 | chr1:1... 79 3e-15
AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein 8 |... 79 3e-15
AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding pro... 78 7e-15
AT1G22760.1 | Symbols: PAB3 | poly(A) binding protein 3 | chr1:8... 78 7e-15
AT1G71770.2 | Symbols: PAB5 | poly(A)-binding protein 5 | chr1:2... 75 6e-14
AT1G71770.1 | Symbols: PAB5 | poly(A)-binding protein 5 | chr1:2... 75 6e-14
AT3G52150.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 74 8e-14
AT3G52150.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 74 8e-14
AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |... 74 1e-13
AT1G34140.1 | Symbols: PAB1 | poly(A) binding protein 1 | chr1:1... 69 3e-12
AT3G16380.1 | Symbols: PAB6 | poly(A) binding protein 6 | chr3:5... 68 7e-12
AT3G53460.3 | Symbols: CP29 | chloroplast RNA-binding protein 29... 63 2e-10
AT3G53460.2 | Symbols: CP29 | chloroplast RNA-binding protein 29... 63 2e-10
AT3G53460.1 | Symbols: CP29 | chloroplast RNA-binding protein 29... 63 2e-10
AT3G53460.4 | Symbols: CP29 | chloroplast RNA-binding protein 29... 63 2e-10
AT2G36660.1 | Symbols: PAB7 | poly(A) binding protein 7 | chr2:1... 60 1e-09
AT2G18510.1 | Symbols: emb2444 | RNA-binding (RRM/RBD/RNP motifs... 58 7e-09
AT3G23830.2 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding ... 57 2e-08
AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding ... 57 2e-08
AT5G54900.1 | Symbols: ATRBP45A, RBP45A | RNA-binding protein 45... 56 3e-08
AT5G02530.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 4e-08
AT5G02530.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 4e-08
AT5G19350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 5e-08
AT5G19350.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 55 5e-08
AT5G06210.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) famil... 55 5e-08
AT4G19610.1 | Symbols: | nucleotide binding;nucleic acid bindin... 55 5e-08
AT3G26420.1 | Symbols: ATRZ-1A | RNA-binding (RRM/RBD/RNP motifs... 55 6e-08
AT4G27000.1 | Symbols: ATRBP45C | RNA-binding (RRM/RBD/RNP motif... 54 1e-07
AT3G52660.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 1e-07
AT3G52660.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 54 1e-07
AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protei... 53 2e-07
AT5G09880.1 | Symbols: | Splicing factor, CC1-like | chr5:30816... 53 3e-07
AT2G16940.3 | Symbols: | Splicing factor, CC1-like | chr2:73428... 53 3e-07
AT3G18610.1 | Symbols: PARLL1, ATNUC-L2, NUC-L2 | nucleolin like... 53 3e-07
AT2G16940.2 | Symbols: | Splicing factor, CC1-like | chr2:73428... 53 3e-07
AT3G19130.1 | Symbols: ATRBP47B, RBP47B | RNA-binding protein 47... 52 3e-07
AT4G13850.3 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 52 3e-07
AT4G13850.2 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 52 3e-07
AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | glycine-rich RNA-... 52 3e-07
AT3G55340.1 | Symbols: PHIP1 | phragmoplastin interacting protei... 52 3e-07
AT2G16940.1 | Symbols: | Splicing factor, CC1-like | chr2:73428... 52 3e-07
AT4G13850.4 | Symbols: ATGRP2 | glycine-rich RNA-binding protein... 52 4e-07
AT4G13860.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 6e-07
AT1G47490.2 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47... 52 6e-07
AT3G14100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 52 7e-07
AT5G08695.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 51 7e-07
AT1G47490.1 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47... 51 1e-06
AT3G08000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 1e-06
AT5G59950.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 1e-06
AT5G59950.5 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 2e-06
AT3G10400.1 | Symbols: | RNA recognition motif and CCHC-type zi... 50 2e-06
AT5G59950.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 2e-06
AT5G59950.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 2e-06
AT5G59950.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 50 2e-06
AT4G20030.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 49 3e-06
AT1G48920.1 | Symbols: ATNUC-L1, PARL1, NUC-L1 | nucleolin like ... 49 3e-06
AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protei... 49 4e-06
AT4G03110.2 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding protein-... 49 4e-06
AT1G11650.1 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/R... 49 4e-06
AT4G39260.2 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 49 5e-06
AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 49 5e-06
AT4G03110.1 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding protein-... 49 5e-06
AT4G39260.3 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold, circa... 49 5e-06
AT1G11650.2 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/R... 49 6e-06
AT4G00830.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 48 7e-06
AT4G00830.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 48 7e-06
AT4G00830.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 48 7e-06
AT5G19960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 48 9e-06
>AT2G35410.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:14898341-14899590 FORWARD LENGTH=308
Length = 308
Score = 233 bits (593), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 115/213 (53%), Positives = 145/213 (68%), Gaps = 10/213 (4%)
Query: 82 TYIKKKLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKDGRGKGYAFVTMASGEEAQA 141
+ +K+KL+VFNLPWSMS DI +LFGQCGTV +VEIIR KDG+ +G+AFVTMASGEEAQA
Sbjct: 91 SNLKRKLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKDGKNRGFAFVTMASGEEAQA 150
Query: 142 AVDKFDTLELSGRILRVELAKRFKKXXXXXXX---XXXXXEARHVIYASNLAWKVRSTHL 198
A+DKFDT ++SGRI+ V A+RFKK + RH +Y SNLAWK RSTHL
Sbjct: 151 AIDKFDTFQVSGRIISVSFARRFKKPTPKSPNDLPSPAPGDTRHKLYVSNLAWKARSTHL 210
Query: 199 REFFTENFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDGKELMGRSLFLKI 258
RE FT P+SAR+VF P G ++GYGF+S+ T+EEAE AI+ L+GKE+MGR + LK
Sbjct: 211 RELFTAADFNPVSARVVFADPEGRSSGYGFVSFATREEAENAITKLNGKEIMGRPITLKF 270
Query: 259 SEKKVKEA-------GSEKDEDLDQGHDAPTEE 284
S + E+ + ED D D T E
Sbjct: 271 SLRSASESEDGDSVEANNASEDGDTVEDKNTSE 303
>AT3G52380.1 | Symbols: CP33, PDE322 | chloroplast RNA-binding
protein 33 | chr3:19421619-19422855 FORWARD LENGTH=329
Length = 329
Score = 115 bits (287), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 109/185 (58%), Gaps = 8/185 (4%)
Query: 87 KLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGK-DGRGKGYAFVTMASGEEAQAAVDK 145
+LYV NLP++++++++ +FG+ GTV DV+I+ K R +G+ FVTM S EEA+ A+
Sbjct: 117 RLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQM 176
Query: 146 FDTLELSGRILRVELAKRFKKXXXXXXXXXXXXEAR------HVIYASNLAWKVRSTHLR 199
F++ ++ GR ++V + + R H +YA NL W + S L+
Sbjct: 177 FNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQGLK 236
Query: 200 EFFTENFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDGKELMGRSLFLKIS 259
+ F + L A+++++ +G + G+GFIS+ + E ++A++ ++G E+ GR+L L ++
Sbjct: 237 DAFGDQ-PGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVEGRALRLNLA 295
Query: 260 EKKVK 264
++ K
Sbjct: 296 SEREK 300
>AT5G50250.1 | Symbols: CP31B | chloroplast RNA-binding protein 31B
| chr5:20452677-20453965 REVERSE LENGTH=289
Length = 289
Score = 114 bits (285), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 64/179 (35%), Positives = 102/179 (56%), Gaps = 5/179 (2%)
Query: 87 KLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKD-GRGKGYAFVTMASGEEAQAAVDK 145
KL+V NLP+ + + + LF Q GTV E+I +D + +G+ FVTM++ EEA+ AV+K
Sbjct: 114 KLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEK 173
Query: 146 FDTLELSGRILRVELAKRFKKXXXXXXXXXXXXEARHVIYASNLAWKVRSTHLREFFTEN 205
F++ E++GR L V R +A IY NL W V S L F+E+
Sbjct: 174 FNSFEVNGRRLTV---NRAAPRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLFSEH 230
Query: 206 FKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDGKELMGRSLFLKISEKKVK 264
K + AR+V D +G + G+GF+ + E AI+ALDG+ L GR++ + ++E++ +
Sbjct: 231 GKV-VDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVNVAEERTR 288
>AT4G09040.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:5795075-5797315 REVERSE LENGTH=304
Length = 304
Score = 110 bits (276), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 104/185 (56%), Gaps = 1/185 (0%)
Query: 85 KKKLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKDGRGKGYAFVTMASGEEAQAAVD 144
K +L N+PW+ + DI+ LF + G+V D+E+ K R +G F+ MAS EEA A+
Sbjct: 93 KTRLIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKERNRGLVFIEMASPEEAATALK 152
Query: 145 KFDTLELSGRILRVELAKRFKKXXXXXXXXXXXXEARHVIYASNLAWKVRSTHLREFFTE 204
++ E GR L+V+ AK KK + ++ +NLA++ R+ HL+EFF
Sbjct: 153 SLESCEYEGRRLKVDYAKTKKKKTYAPRETPSPVPTFN-LFVANLAFEARAKHLKEFFDA 211
Query: 205 NFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDGKELMGRSLFLKISEKKVK 264
+ +S ++F ++GYGF+S+ TK++AEAA+ GK+ +GR + L S++ VK
Sbjct: 212 DTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALIEFQGKDFLGRPIRLAKSKQFVK 271
Query: 265 EAGSE 269
E
Sbjct: 272 LQAKE 276
>AT4G09040.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:5795075-5797193 REVERSE LENGTH=244
Length = 244
Score = 110 bits (274), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/185 (34%), Positives = 104/185 (56%), Gaps = 1/185 (0%)
Query: 85 KKKLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKDGRGKGYAFVTMASGEEAQAAVD 144
K +L N+PW+ + DI+ LF + G+V D+E+ K R +G F+ MAS EEA A+
Sbjct: 33 KTRLIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKERNRGLVFIEMASPEEAATALK 92
Query: 145 KFDTLELSGRILRVELAKRFKKXXXXXXXXXXXXEARHVIYASNLAWKVRSTHLREFFTE 204
++ E GR L+V+ AK KK + ++ +NLA++ R+ HL+EFF
Sbjct: 93 SLESCEYEGRRLKVDYAKTKKKKTYAPRETPSPVPTFN-LFVANLAFEARAKHLKEFFDA 151
Query: 205 NFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDGKELMGRSLFLKISEKKVK 264
+ +S ++F ++GYGF+S+ TK++AEAA+ GK+ +GR + L S++ VK
Sbjct: 152 DTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALIEFQGKDFLGRPIRLAKSKQFVK 211
Query: 265 EAGSE 269
E
Sbjct: 212 LQAKE 216
>AT4G24770.1 | Symbols: RBP31, ATRBP31, CP31, ATRBP33 | 31-kDa RNA
binding protein | chr4:12766223-12767952 REVERSE
LENGTH=329
Length = 329
Score = 108 bits (271), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 61/177 (34%), Positives = 103/177 (58%), Gaps = 5/177 (2%)
Query: 87 KLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKD-GRGKGYAFVTMASGEEAQAAVDK 145
KL+V NL + +++ + LF Q GTV E+I ++ + +G+ FVTM+S +EA+ AV+K
Sbjct: 151 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEK 210
Query: 146 FDTLELSGRILRVELAKRFKKXXXXXXXXXXXXEARHVIYASNLAWKVRSTHLREFFTEN 205
F+ +L+GR+L V A E +Y NL W V + L + F+E+
Sbjct: 211 FNRYDLNGRLLTVNKAA---PRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEH 267
Query: 206 FKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDGKELMGRSLFLKISEKK 262
K + AR+V+D +G + G+GF++ +E AISALDG+ L GR++ + ++E++
Sbjct: 268 GKV-VEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEER 323
>AT1G60000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:22093678-22094540 REVERSE LENGTH=258
Length = 258
Score = 106 bits (264), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/180 (33%), Positives = 96/180 (53%), Gaps = 7/180 (3%)
Query: 84 IKKKLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKD-GRGKGYAFVTMASGEEAQAA 142
+ KLY NLP+++ +A + + VE++ +D G+ +G+AFVTM++ E+
Sbjct: 83 VNTKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNII 142
Query: 143 VDKFDTLELSGRILRVELAKRFKKXXXXXXXXXXXXEARHVIYASNLAWKVRSTHLREFF 202
+D D E GR L+V A + K E H ++ NL+W V S L F
Sbjct: 143 IDNLDGTEYLGRALKVNFADKPKPNKEPLYP-----ETEHKLFVGNLSWTVTSESLAGAF 197
Query: 203 TENFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDGKELMGRSLFLKISEKK 262
E + AR+VFD +G + GYGF+ Y +K E E A+ +LDG EL GR++ + +++ K
Sbjct: 198 RECGDV-VGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIRVNLAQGK 256
>AT2G37220.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr2:15634980-15636331 REVERSE LENGTH=289
Length = 289
Score = 105 bits (262), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 103/195 (52%), Gaps = 20/195 (10%)
Query: 87 KLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGK-DGRGKGYAFVTMASGEEAQAAVDK 145
KL+V NLP+++ +A + LF G V VE+I K GR +G+ FVTM+S E +AA +
Sbjct: 92 KLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQ 151
Query: 146 FDTLELSGRILRVELA----KR---FKK---------XXXXXXXXXXXXEARHVIYASNL 189
F+ EL GR LRV KR F + + + +Y NL
Sbjct: 152 FNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNL 211
Query: 190 AWKVRSTHLREFFTENFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDGKEL 249
+W V L F+E K + AR+++D SG + G+GF++Y + +E + AI +LDG +L
Sbjct: 212 SWGVDDMALESLFSEQGKV-VEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADL 270
Query: 250 MGRSLFLKISEKKVK 264
GR +++SE + +
Sbjct: 271 DGRQ--IRVSEAEAR 283
>AT1G01080.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:45503-46789 REVERSE LENGTH=293
Length = 293
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 90/179 (50%), Gaps = 10/179 (5%)
Query: 87 KLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRG-KDGRGKGYAFVTMASGEEAQAAVDK 145
+LYV N+P S A + D+F GTV VE+ R + G +G +VTM S A+ A+
Sbjct: 109 ELYVCNIPRSYDIAQLLDMFQPFGTVISVEVSRNPQTGESRGSGYVTMGSINSAKIAIAS 168
Query: 146 FDTLELSGRILRVELA-------KRFKKXXXXXXXXXXXXEARHVIYASNLAWKVRSTHL 198
D E+ GR +RV + +R + E++H +Y NL W + L
Sbjct: 169 LDGTEVGGREMRVRYSVDMNPGTRRNPEVLNSTPKKILMYESQHKVYVGNLPWFTQPDGL 228
Query: 199 REFFTENFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDGKELMGRSLFLK 257
R F++ F +S R++ D +G + F+S+ + EE +AA+S +G + GR + ++
Sbjct: 229 RNHFSK-FGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALS-FNGTQYEGRRIIVR 285
>AT1G01080.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr1:45503-46789 REVERSE LENGTH=294
Length = 294
Score = 87.8 bits (216), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 90/180 (50%), Gaps = 11/180 (6%)
Query: 87 KLYVFNLPWSMSAADIKDLFGQCGTVTDVEII--RGKDGRGKGYAFVTMASGEEAQAAVD 144
+LYV N+P S A + D+F GTV VE++ + G +G +VTM S A+ A+
Sbjct: 109 ELYVCNIPRSYDIAQLLDMFQPFGTVISVEVVSRNPQTGESRGSGYVTMGSINSAKIAIA 168
Query: 145 KFDTLELSGRILRVELA-------KRFKKXXXXXXXXXXXXEARHVIYASNLAWKVRSTH 197
D E+ GR +RV + +R + E++H +Y NL W +
Sbjct: 169 SLDGTEVGGREMRVRYSVDMNPGTRRNPEVLNSTPKKILMYESQHKVYVGNLPWFTQPDG 228
Query: 198 LREFFTENFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDGKELMGRSLFLK 257
LR F++ F +S R++ D +G + F+S+ + EE +AA+S +G + GR + ++
Sbjct: 229 LRNHFSK-FGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAALS-FNGTQYEGRRIIVR 286
>AT1G49760.2 | Symbols: PAB8 | poly(A) binding protein 8 |
chr1:18416740-18419753 FORWARD LENGTH=671
Length = 671
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 94/187 (50%), Gaps = 17/187 (9%)
Query: 87 KLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKDGRGKGYAFVTMASGEEAQAAVD-- 144
+YV NL S+S ++ +FG+ G T I+R +G+ KG+ FV + ++A AVD
Sbjct: 225 NVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDAL 284
Query: 145 ---KFDTLE-LSGRILR-----VELAKRFKKXXXXXXXXXXXXEARHVIYASNLAWKVRS 195
FD E G+ + EL ++F++ +Y NL V
Sbjct: 285 NGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSN----LYVKNLDESVTD 340
Query: 196 THLREFFTENFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDGKELMGRSLF 255
LRE F F S +++ D PSG + G GF+++ T EEA AI+ ++GK ++ + L+
Sbjct: 341 DKLREHFAP-FGTITSCKVMRD-PSGVSRGSGFVAFSTPEEATRAITEMNGKMIVTKPLY 398
Query: 256 LKISEKK 262
+ ++++K
Sbjct: 399 VALAQRK 405
Score = 70.9 bits (172), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 82/170 (48%), Gaps = 12/170 (7%)
Query: 88 LYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKDGRGK-GYAFVTMASGEEAQAAVDKF 146
LYV +L +++ + + + F Q G V V + R R GY +V A+ ++A A+++
Sbjct: 47 LYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNEL 106
Query: 147 DTLELSGRILRVELAKRFKKXXXXXXXXXXXXEARHVIYASNLAWKVRSTHLREFFTENF 206
+ + L+GR +RV + R I+ NL + L E F+ F
Sbjct: 107 NFMALNGRAIRVMYSVRDPSLRKSGVGN---------IFIKNLDKSIDHKALHETFSA-F 156
Query: 207 KAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDGKELMGRSLFL 256
LS ++ D PSG + GYGF+ Y T E A+ AI L+G L + +++
Sbjct: 157 GPILSCKVAVD-PSGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYV 205
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 87/191 (45%), Gaps = 14/191 (7%)
Query: 87 KLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKDGRGKGYAFVTMASGEEAQAAVDKF 146
+++ NL S+ + + F G + ++ G+ KGY FV + E AQ A+DK
Sbjct: 134 NIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAIDKL 193
Query: 147 DTLELSGRILRV-ELAKRFKKXXXXXXXXXXXXEARHVIYASNLAWKVRSTHLREFFTEN 205
+ + L+ + + V + ++ +Y NL+ + L + F E
Sbjct: 194 NGMLLNDKQVYVGPFVHKLQRDPSGEKVKFTN------VYVKNLSESLSDEELNKVFGE- 246
Query: 206 FKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDGKELMGRSLFLKISEKKVKE 265
F S I+ D G + G+GF+++ ++A A+ AL+GK + F+ ++KK
Sbjct: 247 FGVTTSCVIMRDG-EGKSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKAQKK--- 302
Query: 266 AGSEKDEDLDQ 276
SE++ +L Q
Sbjct: 303 --SERETELKQ 311
>AT1G49760.1 | Symbols: PAB8, PABP8 | poly(A) binding protein 8 |
chr1:18416740-18419753 FORWARD LENGTH=671
Length = 671
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 94/187 (50%), Gaps = 17/187 (9%)
Query: 87 KLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKDGRGKGYAFVTMASGEEAQAAVD-- 144
+YV NL S+S ++ +FG+ G T I+R +G+ KG+ FV + ++A AVD
Sbjct: 225 NVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDAL 284
Query: 145 ---KFDTLE-LSGRILR-----VELAKRFKKXXXXXXXXXXXXEARHVIYASNLAWKVRS 195
FD E G+ + EL ++F++ +Y NL V
Sbjct: 285 NGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSN----LYVKNLDESVTD 340
Query: 196 THLREFFTENFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDGKELMGRSLF 255
LRE F F S +++ D PSG + G GF+++ T EEA AI+ ++GK ++ + L+
Sbjct: 341 DKLREHFAP-FGTITSCKVMRD-PSGVSRGSGFVAFSTPEEATRAITEMNGKMIVTKPLY 398
Query: 256 LKISEKK 262
+ ++++K
Sbjct: 399 VALAQRK 405
Score = 70.9 bits (172), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 82/170 (48%), Gaps = 12/170 (7%)
Query: 88 LYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKDGRGK-GYAFVTMASGEEAQAAVDKF 146
LYV +L +++ + + + F Q G V V + R R GY +V A+ ++A A+++
Sbjct: 47 LYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNEL 106
Query: 147 DTLELSGRILRVELAKRFKKXXXXXXXXXXXXEARHVIYASNLAWKVRSTHLREFFTENF 206
+ + L+GR +RV + R I+ NL + L E F+ F
Sbjct: 107 NFMALNGRAIRVMYSVRDPSLRKSGVGN---------IFIKNLDKSIDHKALHETFSA-F 156
Query: 207 KAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDGKELMGRSLFL 256
LS ++ D PSG + GYGF+ Y T E A+ AI L+G L + +++
Sbjct: 157 GPILSCKVAVD-PSGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYV 205
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 87/191 (45%), Gaps = 14/191 (7%)
Query: 87 KLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKDGRGKGYAFVTMASGEEAQAAVDKF 146
+++ NL S+ + + F G + ++ G+ KGY FV + E AQ A+DK
Sbjct: 134 NIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAIDKL 193
Query: 147 DTLELSGRILRV-ELAKRFKKXXXXXXXXXXXXEARHVIYASNLAWKVRSTHLREFFTEN 205
+ + L+ + + V + ++ +Y NL+ + L + F E
Sbjct: 194 NGMLLNDKQVYVGPFVHKLQRDPSGEKVKFTN------VYVKNLSESLSDEELNKVFGE- 246
Query: 206 FKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDGKELMGRSLFLKISEKKVKE 265
F S I+ D G + G+GF+++ ++A A+ AL+GK + F+ ++KK
Sbjct: 247 FGVTTSCVIMRDG-EGKSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKAQKK--- 302
Query: 266 AGSEKDEDLDQ 276
SE++ +L Q
Sbjct: 303 --SERETELKQ 311
>AT4G34110.1 | Symbols: PAB2, PABP2, ATPAB2 | poly(A) binding
protein 2 | chr4:16336732-16339892 FORWARD LENGTH=629
Length = 629
Score = 78.2 bits (191), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 95/187 (50%), Gaps = 17/187 (9%)
Query: 87 KLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKDGRGKGYAFVTMASGEEAQAAVD-- 144
+YV NL S + D+K+ FG+ G +T +++ +G+ KG+ FV + ++A AV+
Sbjct: 216 NVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESL 275
Query: 145 ---KFDTLE-LSGRILR-----VELAKRFKKXXXXXXXXXXXXEARHVIYASNLAWKVRS 195
KFD E GR + EL R+++ +Y NL +
Sbjct: 276 NGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSN----LYVKNLDPSISD 331
Query: 196 THLREFFTENFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDGKELMGRSLF 255
L+E F+ F S++++ D P+G + G GF+++ T EEA A+S L GK + + L+
Sbjct: 332 EKLKEIFSP-FGTVTSSKVMRD-PNGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLY 389
Query: 256 LKISEKK 262
+ I+++K
Sbjct: 390 VAIAQRK 396
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 83/170 (48%), Gaps = 12/170 (7%)
Query: 88 LYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRG-KDGRGKGYAFVTMASGEEAQAAVDKF 146
LYV +L ++++ + + D FGQ GTV V + R R GY +V + ++A A+ +
Sbjct: 38 LYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQEL 97
Query: 147 DTLELSGRILRVELAKRFKKXXXXXXXXXXXXEARHVIYASNLAWKVRSTHLREFFTENF 206
+ + L G+ +RV + R I+ NL + L + F+ +F
Sbjct: 98 NYIPLYGKPIRVMYSHR---------DPSVRRSGAGNIFIKNLDESIDHKALHDTFS-SF 147
Query: 207 KAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDGKELMGRSLFL 256
+S ++ D+ SG + GYGF+ Y +E A+ AI L+G L + +++
Sbjct: 148 GNIVSCKVAVDS-SGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYV 196
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 87/188 (46%), Gaps = 12/188 (6%)
Query: 87 KLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKDGRGKGYAFVTMASGEEAQAAVDKF 146
+++ NL S+ + D F G + ++ G+ KGY FV A+ E AQ A++K
Sbjct: 125 NIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKL 184
Query: 147 DTLELSGRILRVELAKRFKKXXXXXXXXXXXXEARHVIYASNLAWKVRSTHLREFFTENF 206
+ + L+ + + V R ++ +Y NLA L+ F E
Sbjct: 185 NGMLLNDKQVYVGPFLRRQERDSTANKTKFTN-----VYVKNLAESTTDDDLKNAFGEYG 239
Query: 207 KAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDGKELMGRSLFLKISEKKVKEA 266
K +++ +V G + G+GF+++ ++A A+ +L+G + + ++ ++KK
Sbjct: 240 K--ITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKK---- 293
Query: 267 GSEKDEDL 274
SE++ +L
Sbjct: 294 -SERETEL 300
>AT1G22760.1 | Symbols: PAB3 | poly(A) binding protein 3 |
chr1:8055599-8058799 FORWARD LENGTH=660
Length = 660
Score = 77.8 bits (190), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 93/187 (49%), Gaps = 17/187 (9%)
Query: 87 KLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKDGRGKGYAFVTMASGEEAQAAVDKF 146
+YV NLP + +++ FG+ G ++ ++R + G + + FV E A +AV+K
Sbjct: 230 NVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKM 289
Query: 147 DTLELSGRILRV-----------ELAKRFKKXXXXXXXXXXXXEARHVIYASNLAWKVRS 195
+ + L +L V EL ++F++ +Y NL V
Sbjct: 290 NGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGAN----LYLKNLDDSVDD 345
Query: 196 THLREFFTENFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDGKELMGRSLF 255
L+E F+E + S++++ + P G + G+GF++Y EEA A+S ++GK + + L+
Sbjct: 346 EKLKEMFSE-YGNVTSSKVMLN-PQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLY 403
Query: 256 LKISEKK 262
+ ++++K
Sbjct: 404 IALAQRK 410
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 83/175 (47%), Gaps = 11/175 (6%)
Query: 82 TYIKKKLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKDGRGKGYAFVTMASGEEAQA 141
T+ LY +L ++ A + DLF V V + R ++ R GYA++ ++ +A
Sbjct: 45 THPNSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYR 104
Query: 142 AVDKFDTLELSGRILRVELAKRFKKXXXXXXXXXXXXEARHVIYASNLAWKVRSTHLREF 201
A++ + L R +R+ L+ R + I+ NL + + L E
Sbjct: 105 AMEALNYTPLFDRPIRIMLSNR---------DPSTRLSGKGNIFIKNLDASIDNKALFET 155
Query: 202 FTENFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDGKELMGRSLFL 256
F+ +F LS ++ D +G + GYGF+ + +E A+AAI L+G + + +F+
Sbjct: 156 FS-SFGTILSCKVAMDV-TGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFV 208
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 89/190 (46%), Gaps = 10/190 (5%)
Query: 85 KKKLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKDGRGKGYAFVTMASGEEAQAAVD 144
K +++ NL S+ + + F GT+ ++ GR KGY FV E AQAA+D
Sbjct: 135 KGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAID 194
Query: 145 KFDTLELSGRILRVELAKRFKKXXXXXXXXXXXXEARHVIYASNLAWKVRSTHLREFFTE 204
K + + ++ + + V F + +Y NL ++ LR+ F +
Sbjct: 195 KLNGMLMNDKQVFV---GHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGK 251
Query: 205 NFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDGKELMGRSLFLKISEKKVK 264
F +S+ +V SG + +GF+++ E A +A+ ++G L L++ ++KK
Sbjct: 252 -FGV-ISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKK-- 307
Query: 265 EAGSEKDEDL 274
SE++E+L
Sbjct: 308 ---SEREEEL 314
>AT1G71770.2 | Symbols: PAB5 | poly(A)-binding protein 5 |
chr1:26990777-26993489 REVERSE LENGTH=682
Length = 682
Score = 74.7 bits (182), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 92/187 (49%), Gaps = 17/187 (9%)
Query: 87 KLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKDGRGKGYAFVTMASGEEAQAAVDKF 146
+YV NLP ++ ++K FG+ G ++ +++ + G + + FV S E A AV+K
Sbjct: 240 NVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKM 299
Query: 147 DTLELSGRILRV-----------ELAKRFKKXXXXXXXXXXXXEARHVIYASNLAWKVRS 195
+ + L +L V EL ++F++ +Y NL V
Sbjct: 300 NGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSN----LYLKNLDDSVND 355
Query: 196 THLREFFTENFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDGKELMGRSLF 255
L+E F+E + S +++ ++ G + G+GF++Y EEA A+ ++GK + + L+
Sbjct: 356 EKLKEMFSE-YGNVTSCKVMMNS-QGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLY 413
Query: 256 LKISEKK 262
+ ++++K
Sbjct: 414 VALAQRK 420
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 90/188 (47%), Gaps = 11/188 (5%)
Query: 82 TYIKKKLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKDGRGKGYAFVTMASGEEAQA 141
T+ LYV +L S++ + + DLF Q V ++ + R R GYA+V A+ E+A
Sbjct: 55 THPNSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASR 114
Query: 142 AVDKFDTLELSGRILRVELAKRFKKXXXXXXXXXXXXEARHVIYASNLAWKVRSTHLREF 201
A++ + + R +R+ L+ R + ++ NL + + L E
Sbjct: 115 AMESLNYAPIRDRPIRIMLSNR---------DPSTRLSGKGNVFIKNLDASIDNKALYET 165
Query: 202 FTENFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDGKELMGRSLFLKISEK 261
F+ +F LS ++ D G + GYGF+ + +E A+AAI L+G L + +F+ +
Sbjct: 166 FS-SFGTILSCKVAMDV-VGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVR 223
Query: 262 KVKEAGSE 269
+ A SE
Sbjct: 224 RQDRARSE 231
>AT1G71770.1 | Symbols: PAB5 | poly(A)-binding protein 5 |
chr1:26990777-26993489 REVERSE LENGTH=682
Length = 682
Score = 74.7 bits (182), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 92/187 (49%), Gaps = 17/187 (9%)
Query: 87 KLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKDGRGKGYAFVTMASGEEAQAAVDKF 146
+YV NLP ++ ++K FG+ G ++ +++ + G + + FV S E A AV+K
Sbjct: 240 NVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKM 299
Query: 147 DTLELSGRILRV-----------ELAKRFKKXXXXXXXXXXXXEARHVIYASNLAWKVRS 195
+ + L +L V EL ++F++ +Y NL V
Sbjct: 300 NGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSN----LYLKNLDDSVND 355
Query: 196 THLREFFTENFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDGKELMGRSLF 255
L+E F+E + S +++ ++ G + G+GF++Y EEA A+ ++GK + + L+
Sbjct: 356 EKLKEMFSE-YGNVTSCKVMMNS-QGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLY 413
Query: 256 LKISEKK 262
+ ++++K
Sbjct: 414 VALAQRK 420
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 90/188 (47%), Gaps = 11/188 (5%)
Query: 82 TYIKKKLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKDGRGKGYAFVTMASGEEAQA 141
T+ LYV +L S++ + + DLF Q V ++ + R R GYA+V A+ E+A
Sbjct: 55 THPNSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASR 114
Query: 142 AVDKFDTLELSGRILRVELAKRFKKXXXXXXXXXXXXEARHVIYASNLAWKVRSTHLREF 201
A++ + + R +R+ L+ R + ++ NL + + L E
Sbjct: 115 AMESLNYAPIRDRPIRIMLSNR---------DPSTRLSGKGNVFIKNLDASIDNKALYET 165
Query: 202 FTENFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDGKELMGRSLFLKISEK 261
F+ +F LS ++ D G + GYGF+ + +E A+AAI L+G L + +F+ +
Sbjct: 166 FS-SFGTILSCKVAMDV-VGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVR 223
Query: 262 KVKEAGSE 269
+ A SE
Sbjct: 224 RQDRARSE 231
>AT3G52150.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19342074-19343090 FORWARD LENGTH=253
Length = 253
Score = 74.3 bits (181), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 90/174 (51%), Gaps = 6/174 (3%)
Query: 86 KKLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGK-DGRGKGYAFVTMASGEEAQAAVD 144
+++Y+ N+P +++ + L + G V V+++ K GR + + F TM S E+A A V+
Sbjct: 76 RRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVE 135
Query: 145 KFDTLELSGRILRVELAKR----FKKXXXXXXXXXXXXEARHVIYASNLAWKVRSTHLRE 200
K + + GR ++V + ++ ++ + +Y NLA V L
Sbjct: 136 KLNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNLAKTVTKEMLEN 195
Query: 201 FFTENFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDGKELMGRSL 254
F+E K +SA++ + +TG+GF+++ ++E+ EAAI AL+ L G+ +
Sbjct: 196 LFSEKGKV-VSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQKI 248
>AT3G52150.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19342074-19343090 FORWARD LENGTH=253
Length = 253
Score = 74.3 bits (181), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 90/174 (51%), Gaps = 6/174 (3%)
Query: 86 KKLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGK-DGRGKGYAFVTMASGEEAQAAVD 144
+++Y+ N+P +++ + L + G V V+++ K GR + + F TM S E+A A V+
Sbjct: 76 RRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGFATMKSVEDANAVVE 135
Query: 145 KFDTLELSGRILRVELAKR----FKKXXXXXXXXXXXXEARHVIYASNLAWKVRSTHLRE 200
K + + GR ++V + ++ ++ + +Y NLA V L
Sbjct: 136 KLNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGNLAKTVTKEMLEN 195
Query: 201 FFTENFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDGKELMGRSL 254
F+E K +SA++ + +TG+GF+++ ++E+ EAAI AL+ L G+ +
Sbjct: 196 LFSEKGKV-VSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLLEGQKI 248
>AT2G23350.1 | Symbols: PAB4, PABP4 | poly(A) binding protein 4 |
chr2:9943209-9946041 FORWARD LENGTH=662
Length = 662
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 95/187 (50%), Gaps = 17/187 (9%)
Query: 87 KLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKDGRGKGYAFVTMASGEEAQAAVD-- 144
+YV NL + + ++K FGQ G+++ ++R DG+ + + FV + E+A AV+
Sbjct: 226 NVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEAL 285
Query: 145 ---KFDTLE-LSGRILR-----VELAKRFKKXXXXXXXXXXXXEARHVIYASNLAWKVRS 195
KFD E G+ + +EL++R+++ +Y NL V
Sbjct: 286 NGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLN----LYVKNLDDTVTD 341
Query: 196 THLREFFTENFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDGKELMGRSLF 255
LRE F E F S +++ D PSG + G GF+++ EA ++ ++GK + G+ L+
Sbjct: 342 EKLRELFAE-FGTITSCKVMRD-PSGTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLY 399
Query: 256 LKISEKK 262
+ ++++K
Sbjct: 400 VALAQRK 406
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 81/170 (47%), Gaps = 12/170 (7%)
Query: 88 LYVFNLPWSMSAADIKDLFGQCGTVTDVEIIR-GKDGRGKGYAFVTMASGEEAQAAVDKF 146
LYV +L ++++ + + D F + V V + R GY +V ++ ++A+ A+ K
Sbjct: 48 LYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQKL 107
Query: 147 DTLELSGRILRVELAKRFKKXXXXXXXXXXXXEARHVIYASNLAWKVRSTHLREFFTENF 206
+ L+G+++R+ + R ++ NL V + L E F+
Sbjct: 108 NYSYLNGKMIRITYSSRDSSARRSGVGN---------LFVKNLDKSVDNKTLHEAFS-GC 157
Query: 207 KAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDGKELMGRSLFL 256
+S ++ D G + GYGF+ + T++ A+ AI L+GK L + +F+
Sbjct: 158 GTIVSCKVATDH-MGQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFV 206
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 80/176 (45%), Gaps = 7/176 (3%)
Query: 87 KLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKDGRGKGYAFVTMASGEEAQAAVDKF 146
L+V NL S+ + + F CGT+ ++ G+ +GY FV + + A+ A++K
Sbjct: 135 NLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAIEKL 194
Query: 147 DTLELSGRILRVELAKRFKKXXXXXXXXXXXXEARHVIYASNLAWKVRSTHLREFFTENF 206
+ L+ + + V R ++ +Y NL+ L+ F +
Sbjct: 195 NGKVLNDKQIFVGPFLRKEERESAADKMKFTN-----VYVKNLSEATTDDELKTTFGQ-- 247
Query: 207 KAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDGKELMGRSLFLKISEKK 262
+S+ +V G + +GF+++ E+A A+ AL+GK+ + ++ ++KK
Sbjct: 248 YGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALNGKKFDDKEWYVGKAQKK 303
>AT1G34140.1 | Symbols: PAB1 | poly(A) binding protein 1 |
chr1:12433356-12434735 REVERSE LENGTH=407
Length = 407
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 90/187 (48%), Gaps = 16/187 (8%)
Query: 87 KLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKDGRGKGYAFVTMASGEEAQAAVDKF 146
+YV NL + + AD+K LFG+ G +T +++ +G+ + + FV E A A++K
Sbjct: 120 NVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEKM 179
Query: 147 DTLELSGRILRVELAKRFKKXXXXXXXXXXXXEARHVI-----------YASNLAWKVRS 195
+ + + + L V A+R E +I Y NL V +
Sbjct: 180 NGVVVDEKELHVGRAQR---KTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDDSVDN 236
Query: 196 THLREFFTENFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDGKELMGRSLF 255
T L E F+E F S +++ + +G + G GF+ + T EEA A+ ++GK + + ++
Sbjct: 237 TKLEELFSE-FGTITSCKVMVHS-NGISKGVGFVEFSTSEEASKAMLKMNGKMVGNKPIY 294
Query: 256 LKISEKK 262
+ +++ K
Sbjct: 295 VSLAQCK 301
>AT3G16380.1 | Symbols: PAB6 | poly(A) binding protein 6 |
chr3:5558676-5560993 REVERSE LENGTH=537
Length = 537
Score = 67.8 bits (164), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 90/182 (49%), Gaps = 8/182 (4%)
Query: 87 KLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKDGRGKGYAFVTMASGEEAQAAVDKF 146
+YV NL +++ + LF Q GTV+ V ++R GR +G+ FV + E A+ A++
Sbjct: 203 NVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKAMESL 262
Query: 147 DTLELS------GRILRVELAKRFKKXXXXXXXXXXXXEARHVIYASNLAWKVRSTHLRE 200
L+L G+ L+ + + K +Y NL+ + T LRE
Sbjct: 263 CGLQLGSKKLFVGKALKKDERREMLKQKFSDNFIAKPNMRWSNLYVKNLSESMNETRLRE 322
Query: 201 FFTENFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDGKELMGRSLFLKISE 260
F + +SA+++ +G + G+GF+ + EE++ A L+G + G+ + ++++E
Sbjct: 323 IFG-CYGQIVSAKVMCHE-NGRSKGFGFVCFSNCEESKQAKRYLNGFLVDGKPIVVRVAE 380
Query: 261 KK 262
+K
Sbjct: 381 RK 382
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 82/173 (47%), Gaps = 16/173 (9%)
Query: 88 LYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGK-DGRGKGYAFVTMASGEEAQAAVDKF 146
LYV +L ++ D+ D F V V + R G+ YA++ S A A+ +
Sbjct: 23 LYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASNAMTRL 82
Query: 147 DTLELSGRILRVELAKR---FKKXXXXXXXXXXXXEARHVIYASNLAWKVRSTHLREFFT 203
+ +L G+ +R+ ++R +++ +Y NL + S+ L F
Sbjct: 83 NHSDLKGKAMRIMWSQRDLAYRRRTRTGFAN---------LYVKNLDSSITSSCLERMFC 133
Query: 204 ENFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDGKELMGRSLFL 256
F + LS ++V + +G + G+GF+ + T++ A +A SAL G + G+ LF+
Sbjct: 134 P-FGSILSCKVVEE--NGQSKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFV 183
>AT3G53460.3 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 86 KKLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKD-GRGKGYAFVTMASGEEAQAAVD 144
+LYV NL W + +++LF + G V + +I +D GR KG+ FVT++S +E Q A++
Sbjct: 257 NRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAIN 316
Query: 145 KFDTLELSGRILRVELAK 162
+ +L GR +RV A+
Sbjct: 317 SLNGADLDGRQIRVSEAE 334
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 49/81 (60%), Gaps = 3/81 (3%)
Query: 184 IYASNLAWKVRSTHLREFFTENFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISA 243
+Y NL+W V L F E K + AR+++D SG + G+GF++ + +E + AI++
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKV-VEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 244 LDGKELMGRSLFLKISEKKVK 264
L+G +L GR +++SE + +
Sbjct: 318 LNGADLDGRQ--IRVSEAEAR 336
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 87 KLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGK-DGRGKGYAFVTMASGEEAQAAVDK 145
KL+V NL +++ +A + LF G V VE+I K GR +G+ FVTM++ E +AA +
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 146 FDTLELSGRILRVE 159
F+ E GR LRV
Sbjct: 160 FNGYEFEGRPLRVN 173
>AT3G53460.2 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 86 KKLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKD-GRGKGYAFVTMASGEEAQAAVD 144
+LYV NL W + +++LF + G V + +I +D GR KG+ FVT++S +E Q A++
Sbjct: 257 NRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAIN 316
Query: 145 KFDTLELSGRILRVELAK 162
+ +L GR +RV A+
Sbjct: 317 SLNGADLDGRQIRVSEAE 334
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 49/81 (60%), Gaps = 3/81 (3%)
Query: 184 IYASNLAWKVRSTHLREFFTENFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISA 243
+Y NL+W V L F E K + AR+++D SG + G+GF++ + +E + AI++
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKV-VEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 244 LDGKELMGRSLFLKISEKKVK 264
L+G +L GR +++SE + +
Sbjct: 318 LNGADLDGRQ--IRVSEAEAR 336
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 87 KLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGK-DGRGKGYAFVTMASGEEAQAAVDK 145
KL+V NL +++ +A + LF G V VE+I K GR +G+ FVTM++ E +AA +
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 146 FDTLELSGRILRVE 159
F+ E GR LRV
Sbjct: 160 FNGYEFEGRPLRVN 173
>AT3G53460.1 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=342
Length = 342
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 86 KKLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKD-GRGKGYAFVTMASGEEAQAAVD 144
+LYV NL W + +++LF + G V + +I +D GR KG+ FVT++S +E Q A++
Sbjct: 257 NRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAIN 316
Query: 145 KFDTLELSGRILRVELAK 162
+ +L GR +RV A+
Sbjct: 317 SLNGADLDGRQIRVSEAE 334
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 49/81 (60%), Gaps = 3/81 (3%)
Query: 184 IYASNLAWKVRSTHLREFFTENFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISA 243
+Y NL+W V L F E K + AR+++D SG + G+GF++ + +E + AI++
Sbjct: 259 LYVGNLSWGVDDMALENLFNEQGKV-VEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 244 LDGKELMGRSLFLKISEKKVK 264
L+G +L GR +++SE + +
Sbjct: 318 LNGADLDGRQ--IRVSEAEAR 336
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 87 KLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGK-DGRGKGYAFVTMASGEEAQAAVDK 145
KL+V NL +++ +A + LF G V VE+I K GR +G+ FVTM++ E +AA +
Sbjct: 100 KLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQ 159
Query: 146 FDTLELSGRILRVE 159
F+ E GR LRV
Sbjct: 160 FNGYEFEGRPLRVN 173
>AT3G53460.4 | Symbols: CP29 | chloroplast RNA-binding protein 29 |
chr3:19819738-19821423 REVERSE LENGTH=363
Length = 363
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 48/78 (61%), Gaps = 1/78 (1%)
Query: 86 KKLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKD-GRGKGYAFVTMASGEEAQAAVD 144
+LYV NL W + +++LF + G V + +I +D GR KG+ FVT++S +E Q A++
Sbjct: 278 NRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAIN 337
Query: 145 KFDTLELSGRILRVELAK 162
+ +L GR +RV A+
Sbjct: 338 SLNGADLDGRQIRVSEAE 355
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 49/81 (60%), Gaps = 3/81 (3%)
Query: 184 IYASNLAWKVRSTHLREFFTENFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISA 243
+Y NL+W V L F E K + AR+++D SG + G+GF++ + +E + AI++
Sbjct: 280 LYVGNLSWGVDDMALENLFNEQGKV-VEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 338
Query: 244 LDGKELMGRSLFLKISEKKVK 264
L+G +L GR +++SE + +
Sbjct: 339 LNGADLDGRQ--IRVSEAEAR 357
>AT2G36660.1 | Symbols: PAB7 | poly(A) binding protein 7 |
chr2:15361476-15364398 REVERSE LENGTH=609
Length = 609
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 83/176 (47%), Gaps = 9/176 (5%)
Query: 87 KLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKDGRGKGYAFVTMASGEEAQAAVDKF 146
++V NLP S++ A ++D+F + G + ++ +DG+ +GY FV + A AA+
Sbjct: 113 NVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTL 172
Query: 147 DTLELSGRILRVELAKRFKKXXXXXXXXXXXXEARHVIYASNLAWKVRSTHLREFFTENF 206
++ ++ + + + K KK E +Y NL V LRE F E F
Sbjct: 173 NSTIVADK--EIYVGKFMKK-----TDRVKPEEKYTNLYMKNLDADVSEDLLREKFAE-F 224
Query: 207 KAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDGKELMGRSLFLKISEKK 262
+S I D + GY F+++ E+A A ++G + + L++ ++KK
Sbjct: 225 GKIVSLAIAKDE-NRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKK 279
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 87/183 (47%), Gaps = 9/183 (4%)
Query: 87 KLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKDGRGKGYAFVTMASGEEAQAAVDKF 146
LY+ NL +S +++ F + G + + I + ++ +GYAFV + E+A+ A +
Sbjct: 202 NLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETV 261
Query: 147 DTLELSGRILRVELA-KRFKKXXXXXXXXXXXXEARHVI------YASNLAWKVRSTHLR 199
+ + + L V A K+ ++ E + +I Y N+ V LR
Sbjct: 262 NGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELR 321
Query: 200 EFFTENFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDGKELMGRSLFLKIS 259
+ F++ S +++ D G + G+GF+ + T EEA A+ G+ G+ L++ I+
Sbjct: 322 KHFSQ-CGTITSTKLMCDE-KGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIA 379
Query: 260 EKK 262
+KK
Sbjct: 380 QKK 382
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 81/174 (46%), Gaps = 20/174 (11%)
Query: 88 LYVFNLPWSMSAADIKDLFGQCGTVTDVEIIR-GKDGRGKGYAFVTMASGEEAQAAVDKF 146
LYV +L S++ + D F + ++T V + + GR Y + S ++A A++K
Sbjct: 26 LYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKK 85
Query: 147 DTLELSGRILRVELAKRFKKXXXXXXXXXXXXEARH----VIYASNLAWKVRSTHLREFF 202
+ L+G+++RV + R +AR ++ NL V + L++ F
Sbjct: 86 NNSLLNGKMIRVMWSVR-------------APDARRNGVGNVFVKNLPESVTNAVLQDMF 132
Query: 203 TENFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDGKELMGRSLFL 256
+ F +S ++ G + GYGF+ + ++ A AAI L+ + + +++
Sbjct: 133 -KKFGNIVSCKVA-TLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYV 184
>AT2G18510.1 | Symbols: emb2444 | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr2:8031554-8033517 REVERSE LENGTH=363
Length = 363
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 83/176 (47%), Gaps = 11/176 (6%)
Query: 88 LYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGK-DGRGKGYAFVTMASGEEAQAAVDKF 146
+YV L +S + +LF Q G V +V + + + + Y F+ S E+A A+
Sbjct: 27 VYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKVL 86
Query: 147 DTLELSGRILRVELAKRFKKXXXXXXXXXXXXEARHVIYASNLAWKVRSTHLREFFTENF 206
+ ++L G+ +RV A + KK ++ NL V L + F+
Sbjct: 87 NMIKLHGKPIRVNKASQDKKSLDVGAN----------LFIGNLDPDVDEKLLYDTFSAFG 136
Query: 207 KAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDGKELMGRSLFLKISEKK 262
+ +I+ D +G + G+GFISY + E ++AAI ++ G+ L R + + + KK
Sbjct: 137 VIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQITVSYAYKK 192
>AT3G23830.2 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding
protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136
Length = 136
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 83 YIKKKLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKD-GRGKGYAFVTMASGEEAQA 141
Y+ KL+V L W + +K F G VT+ +I ++ GR +G+ FV+ + + A
Sbjct: 32 YMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANN 91
Query: 142 AVDKFDTLELSGRILRVELA 161
A+ + D EL+GR +RV LA
Sbjct: 92 AIKEMDGKELNGRQIRVNLA 111
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 184 IYASNLAWKVRSTHLREFFTENFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISA 243
++ L+W + L++ FT +F A ++ D +G + G+GF+S+ ++ A AI
Sbjct: 37 LFVGGLSWGTDDSSLKQAFT-SFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 244 LDGKELMGRSLFLKISEKK 262
+DGKEL GR + + ++ ++
Sbjct: 96 MDGKELNGRQIRVNLATER 114
>AT3G23830.1 | Symbols: GR-RBP4, GRP4 | glycine-rich RNA-binding
protein 4 | chr3:8606762-8607677 REVERSE LENGTH=136
Length = 136
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 83 YIKKKLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKD-GRGKGYAFVTMASGEEAQA 141
Y+ KL+V L W + +K F G VT+ +I ++ GR +G+ FV+ + + A
Sbjct: 32 YMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANN 91
Query: 142 AVDKFDTLELSGRILRVELA 161
A+ + D EL+GR +RV LA
Sbjct: 92 AIKEMDGKELNGRQIRVNLA 111
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 184 IYASNLAWKVRSTHLREFFTENFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISA 243
++ L+W + L++ FT +F A ++ D +G + G+GF+S+ ++ A AI
Sbjct: 37 LFVGGLSWGTDDSSLKQAFT-SFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 244 LDGKELMGRSLFLKISEKK 262
+DGKEL GR + + ++ ++
Sbjct: 96 MDGKELNGRQIRVNLATER 114
>AT5G54900.1 | Symbols: ATRBP45A, RBP45A | RNA-binding protein 45A |
chr5:22295412-22298126 FORWARD LENGTH=387
Length = 387
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 81/186 (43%), Gaps = 20/186 (10%)
Query: 86 KKLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGK-DGRGKGYAFVTMASGEEAQAAVD 144
K L++ +L M I +F Q G T ++IR K G+ +GY F+ S A+ +
Sbjct: 60 KSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVAERVLQ 119
Query: 145 KFDTLELSG--RILRVELA------KRFKKXXXXXXXXXXXXEARHVIYASNLAWKVRST 196
++ + + R+ A KRF+ H I+ +LA +V
Sbjct: 120 TYNGAPMPSTEQTFRLNWAQAGAGEKRFQTEG-----------PDHTIFVGDLAPEVTDY 168
Query: 197 HLREFFTENFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDGKELMGRSLFL 256
L + F + + A++V D +G + GYGF+ + + E A++ ++G+ R + +
Sbjct: 169 MLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRI 228
Query: 257 KISEKK 262
+ K
Sbjct: 229 GPAANK 234
>AT5G02530.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:564332-565776 REVERSE LENGTH=292
Length = 292
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 46/74 (62%)
Query: 87 KLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKDGRGKGYAFVTMASGEEAQAAVDKF 146
KLY+ NL + +S DIK+LF + G + I + GR KG A V + +A AAV ++
Sbjct: 109 KLYISNLDYGVSNEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVKRY 168
Query: 147 DTLELSGRILRVEL 160
+ ++L G+++++E+
Sbjct: 169 NNVQLDGKLMKIEI 182
>AT5G02530.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:564332-565776 REVERSE LENGTH=290
Length = 290
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 46/74 (62%)
Query: 87 KLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKDGRGKGYAFVTMASGEEAQAAVDKF 146
KLY+ NL + +S DIK+LF + G + I + GR KG A V + +A AAV ++
Sbjct: 109 KLYISNLDYGVSNEDIKELFSEVGDLKRYGIHYDRSGRSKGTAEVVFSRRGDALAAVKRY 168
Query: 147 DTLELSGRILRVEL 160
+ ++L G+++++E+
Sbjct: 169 NNVQLDGKLMKIEI 182
>AT5G19350.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6518978-6521295 FORWARD LENGTH=425
Length = 425
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 82/186 (44%), Gaps = 7/186 (3%)
Query: 86 KKLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGK-DGRGKGYAFVTMASGEEAQAAVD 144
+ L++ +L + + + F Q G + V++IR K G+ +GY F+ S A+ +
Sbjct: 24 RTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQ 83
Query: 145 KFDTLELSGRILRVELAKRFKKXXXXXXXXXXXXEARHVIYASNLAWKVRSTHLREFFTE 204
++ ++ G L L H I+ +LA V L+E F
Sbjct: 84 TYNGTQMPGTELTFRL-----NWASFGSGQKVDAGPDHSIFVGDLAPDVTDYLLQETFRV 138
Query: 205 NFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDGKELMGRSLFLKISEKKVK 264
++ + A++V D +G + GYGF+ + + E A++ ++G R + + + K K
Sbjct: 139 HYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPK-K 197
Query: 265 EAGSEK 270
G ++
Sbjct: 198 NVGVQQ 203
>AT5G19350.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6518978-6521295 FORWARD LENGTH=421
Length = 421
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 82/186 (44%), Gaps = 7/186 (3%)
Query: 86 KKLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGK-DGRGKGYAFVTMASGEEAQAAVD 144
+ L++ +L + + + F Q G + V++IR K G+ +GY F+ S A+ +
Sbjct: 24 RTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQ 83
Query: 145 KFDTLELSGRILRVELAKRFKKXXXXXXXXXXXXEARHVIYASNLAWKVRSTHLREFFTE 204
++ ++ G L L H I+ +LA V L+E F
Sbjct: 84 TYNGTQMPGTELTFRL-----NWASFGSGQKVDAGPDHSIFVGDLAPDVTDYLLQETFRV 138
Query: 205 NFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDGKELMGRSLFLKISEKKVK 264
++ + A++V D +G + GYGF+ + + E A++ ++G R + + + K K
Sbjct: 139 HYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPK-K 197
Query: 265 EAGSEK 270
G ++
Sbjct: 198 NVGVQQ 203
>AT5G06210.1 | Symbols: | RNA binding (RRM/RBD/RNP motifs) family
protein | chr5:1878497-1879515 FORWARD LENGTH=146
Length = 146
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 84 IKKKLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGK-DGRGKGYAFVTMASGEEAQAA 142
+ KL++ L + + + + F +CG V + +I+ + R KG+ FVT AS +EAQ A
Sbjct: 32 VASKLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKA 91
Query: 143 VDKFDTLELSGRILRVELAK 162
+ +F+ +L+GR + V+ AK
Sbjct: 92 LMEFNGQQLNGRTIFVDYAK 111
>AT4G19610.1 | Symbols: | nucleotide binding;nucleic acid
binding;RNA binding | chr4:10677482-10681623 FORWARD
LENGTH=816
Length = 816
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 44/77 (57%)
Query: 87 KLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKDGRGKGYAFVTMASGEEAQAAVDKF 146
++ V NLP + ++D F Q G +TD +++R DG+ + + F+ S +EAQ A+ F
Sbjct: 3 RICVKNLPKHVKEDQLRDHFSQKGEITDAKLMRSNDGKSRQFGFIGFRSAQEAQQAIKYF 62
Query: 147 DTLELSGRILRVELAKR 163
+ L ++ VE+A +
Sbjct: 63 NNTYLGTSLIIVEIAHK 79
>AT3G26420.1 | Symbols: ATRZ-1A | RNA-binding (RRM/RBD/RNP motifs)
family protein with retrovirus zinc finger-like domain |
chr3:9671953-9673055 FORWARD LENGTH=245
Length = 245
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 56/98 (57%), Gaps = 3/98 (3%)
Query: 182 HVIYASNLAWKVRSTHLREFFTENFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAI 241
+ + LAW LR+ F E + + A++V D SG + G+GFI++ K+ + AI
Sbjct: 7 YRCFIGGLAWTTSDRGLRDAF-EKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDEAI 65
Query: 242 SALDGKELMGRSLFLKISEKKVKEAGSEKDEDLDQGHD 279
+A++G +L GR+ + + + + + G+ +D D D+G D
Sbjct: 66 AAMNGMDLDGRT--ITVDKAQPHQGGAGRDNDGDRGRD 101
>AT4G27000.1 | Symbols: ATRBP45C | RNA-binding (RRM/RBD/RNP motifs)
family protein | chr4:13554983-13557763 REVERSE
LENGTH=415
Length = 415
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/203 (21%), Positives = 85/203 (41%), Gaps = 10/203 (4%)
Query: 86 KKLYVFNL-PWSMSAADIKDLFGQCGTVTDVEIIRGK-DGRGKGYAFVTMASGEEAQAAV 143
+ L++ +L PW M + ++FG G T ++IR K +G +GY F+ + A+ +
Sbjct: 80 RSLWIGDLQPW-MDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAERNL 138
Query: 144 DKFDTLELSGRILRVELAKRFKKXXXXXXXXXXXXEARHVIYASNLAWKVRSTHLREFFT 203
++ + E A R H ++ +LA V L E F
Sbjct: 139 QTYNGAPMP----SSEQAFRLNWAQLGAGERRQAEGPEHTVFVGDLAPDVTDHMLTETFK 194
Query: 204 ENFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDGKELMGRSLFLKISEKK- 262
+ + A++V D +G + GYGF+ + + E A++ ++G+ R + + K
Sbjct: 195 AVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQYCSSRPMRTGPAANKK 254
Query: 263 --VKEAGSEKDEDLDQGHDAPTE 283
+ S ++ + G PT
Sbjct: 255 PLTMQPASYQNTQGNSGESDPTN 277
>AT3G52660.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19522598-19524735 FORWARD LENGTH=471
Length = 471
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 87 KLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKD-GRGKGYAFVTMASGEEAQAAVDK 145
++Y+ +P + D+K G G VT+V I+R KD G GKGYAFVT S + A A+D
Sbjct: 93 EVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDT 152
Query: 146 FDTLELSGRILR 157
+ + G+ ++
Sbjct: 153 LNNTDFRGKRIK 164
>AT3G52660.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:19522598-19524735 FORWARD LENGTH=471
Length = 471
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 87 KLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKD-GRGKGYAFVTMASGEEAQAAVDK 145
++Y+ +P + D+K G G VT+V I+R KD G GKGYAFVT S + A A+D
Sbjct: 93 EVYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDT 152
Query: 146 FDTLELSGRILR 157
+ + G+ ++
Sbjct: 153 LNNTDFRGKRIK 164
>AT5G61030.1 | Symbols: GR-RBP3 | glycine-rich RNA-binding protein 3
| chr5:24560870-24562152 FORWARD LENGTH=309
Length = 309
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Query: 184 IYASNLAWKVRSTHLREFFTENFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISA 243
++ +A+ + LRE FT+ + + R++ D +G + G+GF+++ + E A +AI A
Sbjct: 42 LFIGGMAYSMDEDSLREAFTK-YGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQA 100
Query: 244 LDGKELMGR 252
LDG++L GR
Sbjct: 101 LDGRDLHGR 109
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 87 KLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKD-GRGKGYAFVTMASGEEAQAAVDK 145
KL++ + +SM +++ F + G V D +I ++ GR +G+ FVT S E A +A+
Sbjct: 41 KLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQA 100
Query: 146 FDTLELSGRILRVELAK 162
D +L GR+++V A
Sbjct: 101 LDGRDLHGRVVKVNYAN 117
>AT5G09880.1 | Symbols: | Splicing factor, CC1-like |
chr5:3081646-3085179 REVERSE LENGTH=527
Length = 527
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 79/173 (45%), Gaps = 5/173 (2%)
Query: 85 KKKLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKDGR-GKGYAFVTMASGEEAQAAV 143
++ ++ + +P + D+ + F + G V DV +I ++ R KG ++ A+
Sbjct: 167 QRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI 226
Query: 144 DKFDTLELSGRILRVELAKRFKK-XXXXXXXXXXXXEARHVIYASNLAWKVRSTHLREFF 202
L L G+ + V+ ++ K A +Y NL + + LR+ F
Sbjct: 227 ALSGQLFL-GQPVMVKPSEAEKNLAQSNSTTVGGTGPADRKLYVGNLHFNMSELQLRQIF 285
Query: 203 TENFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDGK-ELMGRSL 254
E F ++ D +G G+GFI ++ E ++AA AL+GK E+ GR++
Sbjct: 286 -EAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAAQIALNGKLEIAGRTI 337
>AT2G16940.3 | Symbols: | Splicing factor, CC1-like |
chr2:7342869-7347052 REVERSE LENGTH=599
Length = 599
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 46/73 (63%)
Query: 86 KKLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKDGRGKGYAFVTMASGEEAQAAVDK 145
++LYV NL +MS D++ +F G+V V++ R + G KG+ FV A E+A+ A++
Sbjct: 323 RRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDETGLCKGFGFVQFARLEDARNALNL 382
Query: 146 FDTLELSGRILRV 158
LE++GR ++V
Sbjct: 383 NGQLEIAGRAIKV 395
>AT3G18610.1 | Symbols: PARLL1, ATNUC-L2, NUC-L2 | nucleolin like 2
| chr3:6404270-6407822 REVERSE LENGTH=636
Length = 636
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 86 KKLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKDGRGKGYAFVTMASGEEAQAAVDK 145
K L+ NL + ++ +DI++ F + G V DV + DG KGY + AS EEAQ A++
Sbjct: 384 KTLFAGNLSYQIARSDIENFFKEAGEVVDVRLSSFDDGSFKGYGHIEFASPEEAQKALEM 443
Query: 146 FDTLELSGRILRVELA 161
L L GR +R++LA
Sbjct: 444 NGKL-LLGRDVRLDLA 458
>AT2G16940.2 | Symbols: | Splicing factor, CC1-like |
chr2:7342869-7347052 REVERSE LENGTH=610
Length = 610
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 46/73 (63%)
Query: 86 KKLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKDGRGKGYAFVTMASGEEAQAAVDK 145
++LYV NL +MS D++ +F G+V V++ R + G KG+ FV A E+A+ A++
Sbjct: 334 RRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDETGLCKGFGFVQFARLEDARNALNL 393
Query: 146 FDTLELSGRILRV 158
LE++GR ++V
Sbjct: 394 NGQLEIAGRAIKV 406
>AT3G19130.1 | Symbols: ATRBP47B, RBP47B | RNA-binding protein 47B |
chr3:6611398-6613823 REVERSE LENGTH=435
Length = 435
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 81/187 (43%), Gaps = 22/187 (11%)
Query: 86 KKLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGK-DGRGKGYAFVTMASGEEAQAAVD 144
K L+V +L M + F G V+ V++IR K + +GY FV S A+ +
Sbjct: 108 KTLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVLQ 167
Query: 145 KFD--TLELSGRILRVELAKRFKKXXXXXXXXXXXXEARHV-------IYASNLAWKVRS 195
+ + S + R+ A E R V ++ +L+ V
Sbjct: 168 NYSGSVMPNSDQPFRINWAS------------FSTGEKRAVENGPDLSVFVGDLSPDVTD 215
Query: 196 THLREFFTENFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDGKELMGRSLF 255
L E F++ + + SA++V D+ +G + GYGF+ + + E A++ ++G R +
Sbjct: 216 VLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMR 275
Query: 256 LKISEKK 262
+ I+ K
Sbjct: 276 VGIATPK 282
>AT4G13850.3 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=144
Length = 144
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 84 IKKKLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKD-GRGKGYAFVTMASGEEAQAA 142
+ KL++ L W A ++D F G V D ++I ++ GR +G+ FV A AA
Sbjct: 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAA 92
Query: 143 VDKFDTLELSGRILRVELAK 162
+ + D EL+GR +RV A
Sbjct: 93 ISEMDGKELNGRHIRVNPAN 112
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 184 IYASNLAWKVRSTHLREFFTENFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISA 243
++ L+W LR+ F F + A+++ D +G + G+GF+++ + A AAIS
Sbjct: 37 LFIGGLSWGTDDASLRDAFAH-FGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 244 LDGKELMGRSL 254
+DGKEL GR +
Sbjct: 96 MDGKELNGRHI 106
>AT4G13850.2 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=153
Length = 153
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 84 IKKKLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKD-GRGKGYAFVTMASGEEAQAA 142
+ KL++ L W A ++D F G V D ++I ++ GR +G+ FV A AA
Sbjct: 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAA 92
Query: 143 VDKFDTLELSGRILRVELAK 162
+ + D EL+GR +RV A
Sbjct: 93 ISEMDGKELNGRHIRVNPAN 112
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 184 IYASNLAWKVRSTHLREFFTENFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISA 243
++ L+W LR+ F F + A+++ D +G + G+GF+++ + A AAIS
Sbjct: 37 LFIGGLSWGTDDASLRDAFAH-FGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 244 LDGKELMGRSL 254
+DGKEL GR +
Sbjct: 96 MDGKELNGRHI 106
>AT4G13850.1 | Symbols: ATGRP2, GR-RBP2, GRP2 | glycine-rich
RNA-binding protein 2 | chr4:8021314-8022065 FORWARD
LENGTH=158
Length = 158
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 84 IKKKLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKD-GRGKGYAFVTMASGEEAQAA 142
+ KL++ L W A ++D F G V D ++I ++ GR +G+ FV A AA
Sbjct: 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAA 92
Query: 143 VDKFDTLELSGRILRVELAK 162
+ + D EL+GR +RV A
Sbjct: 93 ISEMDGKELNGRHIRVNPAN 112
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 184 IYASNLAWKVRSTHLREFFTENFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISA 243
++ L+W LR+ F F + A+++ D +G + G+GF+++ + A AAIS
Sbjct: 37 LFIGGLSWGTDDASLRDAFAH-FGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 244 LDGKELMGRSL 254
+DGKEL GR +
Sbjct: 96 MDGKELNGRHI 106
>AT3G55340.1 | Symbols: PHIP1 | phragmoplastin interacting protein 1
| chr3:20515672-20517832 FORWARD LENGTH=597
Length = 597
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 78/178 (43%), Gaps = 12/178 (6%)
Query: 84 IKKKLYVFNLPWSMSAADIKDLFGQCGTVTDVEI-IRGKDGRGKGYAFVTMASGEEAQAA 142
+ KLYV +P+ + +I+ F CG + V+ +R +DG G AF+T + + A+ A
Sbjct: 159 VPNKLYVGGIPYQSTEDEIRSYFRSCGVIIKVDCKMRPEDGAFSGIAFITFDTEDGAKRA 218
Query: 143 VDKFDTLELSGRILRVE-----LAKRFKKXXXXXXXXXXXXEARHVIYASNLAWKVRSTH 197
+ FD + R L ++ + + + +Y NLAW
Sbjct: 219 L-AFDRAAMGDRYLTIQQYVKTTTPSIPRRKTSSGFAPEMVDGYNRVYIGNLAWDTTERD 277
Query: 198 LREFFTENFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAIS-ALDGKELMGRSL 254
+R+ F++ S R+ + +G GY + + K+ AI+ LD + + GR +
Sbjct: 278 IRKLFSDCVIN--SVRLGKNKETGEFKGYAHVDF--KDSVSVAIALKLDQQVICGRPV 331
>AT2G16940.1 | Symbols: | Splicing factor, CC1-like |
chr2:7342869-7347052 REVERSE LENGTH=561
Length = 561
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 46/73 (63%)
Query: 86 KKLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKDGRGKGYAFVTMASGEEAQAAVDK 145
++LYV NL +MS D++ +F G+V V++ R + G KG+ FV A E+A+ A++
Sbjct: 285 RRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDETGLCKGFGFVQFARLEDARNALNL 344
Query: 146 FDTLELSGRILRV 158
LE++GR ++V
Sbjct: 345 NGQLEIAGRAIKV 357
>AT4G13850.4 | Symbols: ATGRP2 | glycine-rich RNA-binding protein 2
| chr4:8021314-8022065 FORWARD LENGTH=129
Length = 129
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 84 IKKKLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKD-GRGKGYAFVTMASGEEAQAA 142
+ KL++ L W A ++D F G V D ++I ++ GR +G+ FV A AA
Sbjct: 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAA 92
Query: 143 VDKFDTLELSGRILRVELAK 162
+ + D EL+GR +RV A
Sbjct: 93 ISEMDGKELNGRHIRVNPAN 112
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 184 IYASNLAWKVRSTHLREFFTENFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISA 243
++ L+W LR+ F F + A+++ D +G + G+GF+++ + A AAIS
Sbjct: 37 LFIGGLSWGTDDASLRDAFAH-FGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 244 LDGKELMGRSL 254
+DGKEL GR +
Sbjct: 96 MDGKELNGRHI 106
>AT4G13860.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:8022601-8023162 FORWARD LENGTH=87
Length = 87
Score = 51.6 bits (122), Expect = 6e-07, Method: Composition-based stats.
Identities = 27/75 (36%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 184 IYASNLAWKVRSTHLREFFTENFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISA 243
+Y NL+ LRE F+ + + A ++ D + + G+GF++Y + EAEAA+S
Sbjct: 5 VYVGNLSPTTTDDMLREAFS-GYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSG 63
Query: 244 LDGKELMGRSLFLKI 258
+DGKEL GR + +K+
Sbjct: 64 MDGKELNGRRVSVKL 78
>AT1G47490.2 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47C |
chr1:17424801-17426114 FORWARD LENGTH=310
Length = 310
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 82/181 (45%), Gaps = 22/181 (12%)
Query: 85 KKKLYVFNLPWSMSAADIKDLF--GQCGTVTDVEIIRGKD-GRGKGYAFVTMASGEEAQA 141
K ++V +L M A + F G + V++IR K+ G +GY FV S + A
Sbjct: 100 NKTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADK 159
Query: 142 AVDKFD--TLELSGRILRVELA------KRFKKXXXXXXXXXXXXEARHVIYASNLAWKV 193
+ +F+ T+ + + R+ A KR + I+ +L+ V
Sbjct: 160 VLREFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLS-----------IFVGDLSPDV 208
Query: 194 RSTHLREFFTENFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDGKELMGRS 253
L E F+E + + +A++V D +G + GYGF+ + + E A++ ++G + R+
Sbjct: 209 SDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRA 268
Query: 254 L 254
+
Sbjct: 269 M 269
>AT3G14100.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:4673027-4675950 FORWARD LENGTH=427
Length = 427
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 80/169 (47%), Gaps = 12/169 (7%)
Query: 86 KKLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKDGRGKGYAFVTMASGEEAQAAVDK 145
+ +YV N+ ++ ++++F G V ++IR KD Y FV A A+
Sbjct: 59 RSVYVGNIHTQVTEPLLQEIFTSTGPVESSKLIR-KDK--SSYGFVHYFDRRSAALAILS 115
Query: 146 FDTLELSGRILRVELAKRFKKXXXXXXXXXXXXEARHVIYASNLAWKVRSTHLREFFTEN 205
+ L G+ ++V A + I+ +L+ +V L + F+
Sbjct: 116 LNGRHLFGQPIKVNWA--------YATGQREDTSSHFNIFVGDLSPEVTDATLYQSFSV- 166
Query: 206 FKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDGKELMGRSL 254
F + AR+++D +G + G+GF+S+ +++A+ AI+ ++GK L R +
Sbjct: 167 FSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWLSSRQI 215
>AT5G08695.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:2829341-2834189 FORWARD LENGTH=690
Length = 690
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 87 KLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKDGRG-KGYAFVTMASGEEAQAAVDK 145
+L+V LP+S + ++ + F + G +++V ++ KD R +G AFV E A+ A+DK
Sbjct: 228 RLFVHGLPYSTTEEELMEHFSKFGDISEVHLVLDKDTRSCRGMAFVLYLIPESAKMAMDK 287
Query: 146 FDTLELSGRILRVELAK 162
D L GR L + AK
Sbjct: 288 LDKLPFQGRTLHILPAK 304
>AT1G47490.1 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 47C |
chr1:17424801-17427182 FORWARD LENGTH=432
Length = 432
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 82/181 (45%), Gaps = 22/181 (12%)
Query: 85 KKKLYVFNLPWSMSAADIKDLF--GQCGTVTDVEIIRGKD-GRGKGYAFVTMASGEEAQA 141
K ++V +L M A + F G + V++IR K+ G +GY FV S + A
Sbjct: 100 NKTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADK 159
Query: 142 AVDKFD--TLELSGRILRVELA------KRFKKXXXXXXXXXXXXEARHVIYASNLAWKV 193
+ +F+ T+ + + R+ A KR + I+ +L+ V
Sbjct: 160 VLREFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLS-----------IFVGDLSPDV 208
Query: 194 RSTHLREFFTENFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDGKELMGRS 253
L E F+E + + +A++V D +G + GYGF+ + + E A++ ++G + R+
Sbjct: 209 SDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRA 268
Query: 254 L 254
+
Sbjct: 269 M 269
>AT3G08000.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:2555034-2555829 REVERSE LENGTH=143
Length = 143
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 184 IYASNLAWKVRSTHLREFFTENFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISA 243
++ L+W V L++ F+ +F RI +D SG + G+GF+ + + +A +A A
Sbjct: 43 LFIGGLSWSVDEQSLKDAFS-SFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDA 101
Query: 244 LDGKELMGRSLFLKISEKKVK 264
+DGK L+GR L + + ++V+
Sbjct: 102 MDGKGLLGRPLRISFALERVR 122
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 87 KLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGK-DGRGKGYAFVTMASGEEAQAAVDK 145
KL++ L WS+ +KD F G V +V I K GR +G+ FV A +A +A D
Sbjct: 42 KLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDALSAKDA 101
Query: 146 FDTLELSGRILRVELA 161
D L GR LR+ A
Sbjct: 102 MDGKGLLGRPLRISFA 117
>AT5G59950.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:24140235-24141410 FORWARD LENGTH=211
Length = 211
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 44/74 (59%)
Query: 87 KLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKDGRGKGYAFVTMASGEEAQAAVDKF 146
KLY+ NL + + DIK+LF + G + + + GR KG A V + +A AAV K+
Sbjct: 89 KLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVKKY 148
Query: 147 DTLELSGRILRVEL 160
+ ++L G+ +++E+
Sbjct: 149 NDVQLDGKPMKIEI 162
>AT5G59950.5 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:24140235-24141504 FORWARD LENGTH=245
Length = 245
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 44/74 (59%)
Query: 87 KLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKDGRGKGYAFVTMASGEEAQAAVDKF 146
KLY+ NL + + DIK+LF + G + + + GR KG A V + +A AAV K+
Sbjct: 89 KLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVKKY 148
Query: 147 DTLELSGRILRVEL 160
+ ++L G+ +++E+
Sbjct: 149 NDVQLDGKPMKIEI 162
>AT3G10400.1 | Symbols: | RNA recognition motif and CCHC-type zinc
finger domains containing protein | chr3:3232636-3233421
FORWARD LENGTH=261
Length = 261
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 85 KKKLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKDGR-GKGYAFVTMASGEEAQAAV 143
K LYV NL +S++ +DI LF G V V +++ + R +G AFV S E+A A
Sbjct: 56 KSTLYVSNLDFSLTNSDIHTLFSTFGKVARVTVLKDRHTRQSRGVAFVLYVSREDAAKAA 115
Query: 144 DKFDTLELSGRILRVELA 161
D L+GR L V +A
Sbjct: 116 RSMDAKILNGRKLTVSIA 133
>AT5G59950.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:24140235-24141504 FORWARD LENGTH=244
Length = 244
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 44/74 (59%)
Query: 87 KLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKDGRGKGYAFVTMASGEEAQAAVDKF 146
KLY+ NL + + DIK+LF + G + + + GR KG A V + +A AAV K+
Sbjct: 89 KLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVKKY 148
Query: 147 DTLELSGRILRVEL 160
+ ++L G+ +++E+
Sbjct: 149 NDVQLDGKPMKIEI 162
>AT5G59950.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:24140235-24141504 FORWARD LENGTH=242
Length = 242
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 44/74 (59%)
Query: 87 KLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKDGRGKGYAFVTMASGEEAQAAVDKF 146
KLY+ NL + + DIK+LF + G + + + GR KG A V + +A AAV K+
Sbjct: 87 KLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVKKY 146
Query: 147 DTLELSGRILRVEL 160
+ ++L G+ +++E+
Sbjct: 147 NDVQLDGKPMKIEI 160
>AT5G59950.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:24140629-24141504 FORWARD LENGTH=178
Length = 178
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 44/74 (59%)
Query: 87 KLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKDGRGKGYAFVTMASGEEAQAAVDKF 146
KLY+ NL + + DIK+LF + G + + + GR KG A V + +A AAV K+
Sbjct: 23 KLYISNLDYGVMNEDIKELFAEVGELKRYTVHFDRSGRSKGTAEVVYSRRGDALAAVKKY 82
Query: 147 DTLELSGRILRVEL 160
+ ++L G+ +++E+
Sbjct: 83 NDVQLDGKPMKIEI 96
>AT4G20030.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:10846362-10847246 FORWARD LENGTH=152
Length = 152
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 84 IKKKLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKD-GRGKGYAFVTMASGEEAQAA 142
+ K+ V NLP+S S +K F G + +V++I+ + R KGYAF+ S ++A A
Sbjct: 38 LASKIMVRNLPFSTSEDFLKREFSAFGEIAEVKLIKDEAMKRSKGYAFIQFTSQDDAFLA 97
Query: 143 VDKFDTLELSGRILRVELAKRFKK 166
++ D +GR++ +++AK K+
Sbjct: 98 IETMDRRMYNGRMIYIDIAKPGKR 121
>AT1G48920.1 | Symbols: ATNUC-L1, PARL1, NUC-L1 | nucleolin like 1 |
chr1:18098186-18101422 FORWARD LENGTH=557
Length = 557
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 46/78 (58%), Gaps = 2/78 (2%)
Query: 86 KKLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKD-GRGKGYAFVTMASGEEAQAAVD 144
K L+ NL +++ AD+++ F + G V DV +D G +G+ V AS EEAQ A++
Sbjct: 297 KTLFAANLSFNIERADVENFFKEAGEVVDVRFSTNRDDGSFRGFGHVEFASSEEAQKALE 356
Query: 145 KFDTLELSGRILRVELAK 162
F L GR +R+++A+
Sbjct: 357 -FHGRPLLGREIRLDIAQ 373
>AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protein 5
| chr1:27915346-27916857 FORWARD LENGTH=289
Length = 289
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Query: 87 KLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKD-GRGKGYAFVTMASGEEAQAAVDK 145
K++V + +S +++ F + G V D +II ++ GR +G+AFVT S EEA A+ +
Sbjct: 35 KIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAM-Q 93
Query: 146 FDTLELSGRILRVELA 161
D +L GR +RV A
Sbjct: 94 LDGQDLHGRRIRVNYA 109
>AT4G03110.2 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding
protein-defense related 1 | chr4:1376710-1379275 REVERSE
LENGTH=439
Length = 439
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 42/64 (65%)
Query: 84 IKKKLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKDGRGKGYAFVTMASGEEAQAAV 143
++ KL+V LP ++S A+++ LF + GT+ D++I+RG KG AF+ + E+A +A+
Sbjct: 104 LEHKLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAM 163
Query: 144 DKFD 147
+ +
Sbjct: 164 ESIN 167
>AT1G11650.1 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/RNP
motifs) family protein | chr1:3914895-3917301 FORWARD
LENGTH=306
Length = 306
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 76/181 (41%), Gaps = 11/181 (6%)
Query: 86 KKLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKD-GRGKGYAFVTMASGEEAQAAVD 144
+ L++ +L + M + F G + ++IR K G+ +GY F+ AS A+ +
Sbjct: 62 RTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQ 121
Query: 145 KFDTLELSG---RILRVELAKRFKKXXXXXXXXXXXXEARHVIYASNLAWKVRSTHLREF 201
F+ + ++ R+ A + I+ +LA V L E
Sbjct: 122 TFNNAPIPSFPDQLFRLNWAS-------LSSGDKRDDSPDYTIFVGDLAADVTDYILLET 174
Query: 202 FTENFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDGKELMGRSLFLKISEK 261
F ++ + A++V D +G GYGF+ + + E A++ ++G R + + +
Sbjct: 175 FRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAAS 234
Query: 262 K 262
K
Sbjct: 235 K 235
>AT4G39260.2 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=126
Length = 126
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 84 IKKKLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKD-GRGKGYAFVTMASGEEAQAA 142
++ + +V L W+ + D++ F Q G V D +II ++ GR +G+ FVT + + A
Sbjct: 4 VEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDA 63
Query: 143 VDKFDTLELSGRILRVELAK 162
+++ + EL GR++ V A+
Sbjct: 64 IEEMNGKELDGRVITVNEAQ 83
>AT4G39260.1 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=169
Length = 169
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 84 IKKKLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKD-GRGKGYAFVTMASGEEAQAA 142
++ + +V L W+ + D++ F Q G V D +II ++ GR +G+ FVT + + A
Sbjct: 4 VEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDA 63
Query: 143 VDKFDTLELSGRILRVELAK 162
+++ + EL GR++ V A+
Sbjct: 64 IEEMNGKELDGRVITVNEAQ 83
>AT4G03110.1 | Symbols: AtRBP-DR1, RBP-DR1 | RNA-binding
protein-defense related 1 | chr4:1376612-1379275 REVERSE
LENGTH=441
Length = 441
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 42/64 (65%)
Query: 84 IKKKLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKDGRGKGYAFVTMASGEEAQAAV 143
++ KL+V LP ++S A+++ LF + GT+ D++I+RG KG AF+ + E+A +A+
Sbjct: 104 LEHKLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAM 163
Query: 144 DKFD 147
+ +
Sbjct: 164 ESIN 167
>AT4G39260.3 | Symbols: CCR1, ATGRP8, GR-RBP8, GRP8 | cold,
circadian rhythm, and RNA binding 1 |
chr4:18274166-18274958 REVERSE LENGTH=92
Length = 92
Score = 48.5 bits (114), Expect = 5e-06, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 84 IKKKLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKD-GRGKGYAFVTMASGEEAQAA 142
++ + +V L W+ + D++ F Q G V D +II ++ GR +G+ FVT + + A
Sbjct: 4 VEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDA 63
Query: 143 VDKFDTLELSGRILRVELAK 162
+++ + EL GR++ V A+
Sbjct: 64 IEEMNGKELDGRVITVNEAQ 83
>AT1G11650.2 | Symbols: ATRBP45B, RBP45B | RNA-binding (RRM/RBD/RNP
motifs) family protein | chr1:3914895-3917941 FORWARD
LENGTH=405
Length = 405
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 76/181 (41%), Gaps = 11/181 (6%)
Query: 86 KKLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKD-GRGKGYAFVTMASGEEAQAAVD 144
+ L++ +L + M + F G + ++IR K G+ +GY F+ AS A+ +
Sbjct: 62 RTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQ 121
Query: 145 KFDTLELSG---RILRVELAKRFKKXXXXXXXXXXXXEARHVIYASNLAWKVRSTHLREF 201
F+ + ++ R+ A + I+ +LA V L E
Sbjct: 122 TFNNAPIPSFPDQLFRLNWAS-------LSSGDKRDDSPDYTIFVGDLAADVTDYILLET 174
Query: 202 FTENFKAPLSARIVFDTPSGWATGYGFISYLTKEEAEAAISALDGKELMGRSLFLKISEK 261
F ++ + A++V D +G GYGF+ + + E A++ ++G R + + +
Sbjct: 175 FRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAAS 234
Query: 262 K 262
K
Sbjct: 235 K 235
>AT4G00830.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352842-354965 FORWARD LENGTH=467
Length = 467
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 87 KLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKD-GRGKGYAFVTMASGEEAQAAVDK 145
++++ LP + D++DL + G + +V +++ +D G KGYAFV + + AQ A+++
Sbjct: 97 EVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEE 156
Query: 146 FDTLELSGRILRVELAK 162
+ E G+ +R L++
Sbjct: 157 LHSKEFKGKTIRCSLSE 173
>AT4G00830.2 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 87 KLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKD-GRGKGYAFVTMASGEEAQAAVDK 145
++++ LP + D++DL + G + +V +++ +D G KGYAFV + + AQ A+++
Sbjct: 117 EVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEE 176
Query: 146 FDTLELSGRILRVELAK 162
+ E G+ +R L++
Sbjct: 177 LHSKEFKGKTIRCSLSE 193
>AT4G00830.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr4:352782-354965 FORWARD LENGTH=495
Length = 495
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 87 KLYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKD-GRGKGYAFVTMASGEEAQAAVDK 145
++++ LP + D++DL + G + +V +++ +D G KGYAFV + + AQ A+++
Sbjct: 117 EVFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEE 176
Query: 146 FDTLELSGRILRVELAK 162
+ E G+ +R L++
Sbjct: 177 LHSKEFKGKTIRCSLSE 193
>AT5G19960.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:6744029-6746133 FORWARD LENGTH=337
Length = 337
Score = 47.8 bits (112), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%)
Query: 88 LYVFNLPWSMSAADIKDLFGQCGTVTDVEIIRGKDGRGKGYAFVTMASGEEAQAAVDKFD 147
+YV LP+ ++ ++ +F G+V V+I+ + RGK Y FVT ++ A A++ D
Sbjct: 9 VYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSVRGKCYGFVTFSNRRSADDAIEDMD 68
Query: 148 TLELSGRILRV 158
+ GR +RV
Sbjct: 69 GKSIGGRAVRV 79