Miyakogusa Predicted Gene

Lj2g3v1468380.1
Show Alignment: 

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1468380.1 tr|G8A0H7|G8A0H7_MEDTR Pentatricopeptide
repeat-containing protein OS=Medicago truncatula
GN=MTR_103,40.74,2e-19,PPR: pentatricopeptide repeat
domain,Pentatricopeptide repeat; SUBFAMILY NOT NAMED,NULL; FAMILY NOT
,CUFF.37218.1
         (100 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G12300.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    85   9e-18
AT1G12620.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    83   4e-17
AT1G62720.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    83   5e-17
AT5G16640.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    82   1e-16
AT3G22470.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    81   1e-16
AT1G62680.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    80   2e-16
AT1G63330.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    78   9e-16
AT1G63400.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    78   1e-15
AT1G62910.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    77   3e-15
AT1G63150.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    77   3e-15
AT1G63130.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    76   5e-15
AT1G63080.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    75   7e-15
AT5G41170.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    75   1e-14
AT1G12700.1 | Symbols:  | ATP binding;nucleic acid binding;helic...    74   1e-14
AT1G12775.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    74   2e-14
AT1G62590.1 | Symbols:  | pentatricopeptide (PPR) repeat-contain...    74   2e-14
AT1G64583.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    72   9e-14
AT1G06580.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    71   1e-13
AT1G31840.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    70   2e-13
AT1G31840.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    70   2e-13
AT1G62670.1 | Symbols: RPF2 | rna processing factor 2 | chr1:232...    70   3e-13
AT1G63070.1 | Symbols:  | pentatricopeptide (PPR) repeat-contain...    70   4e-13
AT1G62914.1 | Symbols:  | pentatricopeptide (PPR) repeat-contain...    70   4e-13
AT3G16710.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    69   6e-13
AT1G64100.2 | Symbols:  | pentatricopeptide (PPR) repeat-contain...    68   1e-12
AT1G64100.1 | Symbols:  | pentatricopeptide (PPR) repeat-contain...    67   3e-12
AT1G62930.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    67   3e-12
AT2G16880.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    67   3e-12
AT4G11690.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    65   1e-11
AT5G39710.1 | Symbols: EMB2745 | Tetratricopeptide repeat (TPR)-...    64   1e-11
AT5G40400.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    63   4e-11
AT4G28010.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    63   5e-11
AT3G07290.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    62   6e-11
AT1G52620.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    62   6e-11
AT5G64320.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    62   6e-11
AT2G01740.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    62   8e-11
AT5G24830.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    61   2e-10
AT5G46100.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    60   2e-10
AT2G02150.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    60   3e-10
AT1G03560.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    60   3e-10
AT3G16890.1 | Symbols: PPR40 | pentatricopeptide (PPR) domain pr...    60   4e-10
AT1G19290.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    60   4e-10
AT5G18475.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    60   4e-10
AT1G05670.2 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    60   4e-10
AT1G05670.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    60   4e-10
AT1G13630.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    60   4e-10
AT1G13630.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    60   4e-10
AT1G74580.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    59   5e-10
AT3G48810.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    59   5e-10
AT1G02060.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    59   5e-10
AT1G09680.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    59   7e-10
AT5G61990.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    58   1e-09
AT4G01400.1 | Symbols:  | FUNCTIONS IN: molecular_function unkno...    58   1e-09
AT5G01110.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    58   1e-09
AT4G01400.3 | Symbols:  | FUNCTIONS IN: molecular_function unkno...    58   1e-09
AT3G53700.1 | Symbols: MEE40 | Pentatricopeptide repeat (PPR) su...    57   2e-09
AT2G17140.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    57   2e-09
AT1G06710.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    57   2e-09
AT5G65560.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    57   2e-09
AT1G64580.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    57   3e-09
AT5G38730.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    57   3e-09
AT1G63630.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    56   4e-09
AT3G09060.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    56   4e-09
AT5G55840.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    56   5e-09
AT1G63630.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    56   5e-09
AT1G09900.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    56   5e-09
AT1G09820.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    56   5e-09
AT5G21222.1 | Symbols:  | protein kinase family protein | chr5:7...    56   5e-09
AT1G79540.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    55   8e-09
AT3G60040.1 | Symbols:  | F-box family protein | chr3:22175937-2...    55   8e-09
AT4G26800.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    55   8e-09
AT5G57250.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    55   1e-08
AT2G06000.2 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    55   1e-08
AT2G06000.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    55   1e-08
AT5G02860.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    55   1e-08
AT2G32630.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    55   1e-08
AT1G63320.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    55   1e-08
AT1G20300.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    54   2e-08
AT4G31850.1 | Symbols: PGR3 | proton gradient regulation 3 | chr...    54   2e-08
AT1G02420.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    54   2e-08
AT3G06920.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    54   2e-08
AT1G63230.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    54   2e-08
AT3G04760.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    54   3e-08
AT5G59900.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    54   3e-08
AT4G19890.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    53   3e-08
AT1G51965.1 | Symbols: ABO5 | ABA Overly-Sensitive 5 | chr1:1931...    53   4e-08
AT2G26790.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    53   4e-08
AT1G13800.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    53   4e-08
AT5G14770.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    53   4e-08
AT2G17525.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    53   5e-08
AT1G55630.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    53   5e-08
AT1G13040.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    53   5e-08
AT2G31400.1 | Symbols: GUN1 | genomes uncoupled 1 | chr2:1338720...    52   6e-08
AT5G61400.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    52   8e-08
AT2G15630.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    52   9e-08
AT1G74900.1 | Symbols: OTP43 | Pentatricopeptide repeat (PPR) su...    52   9e-08
AT2G36240.1 | Symbols:  | pentatricopeptide (PPR) repeat-contain...    52   1e-07
AT5G55740.1 | Symbols: CRR21 | Tetratricopeptide repeat (TPR)-li...    52   1e-07
AT2G17670.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    52   1e-07
AT4G26680.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    51   1e-07
AT4G26680.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    51   1e-07
AT5G12100.1 | Symbols:  | pentatricopeptide (PPR) repeat-contain...    51   1e-07
AT3G14580.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    51   1e-07
AT5G62370.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    51   1e-07
AT5G04810.1 | Symbols:  | pentatricopeptide (PPR) repeat-contain...    51   1e-07
AT4G20090.1 | Symbols: EMB1025 | Pentatricopeptide repeat (PPR) ...    51   2e-07
AT1G19720.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    51   2e-07
AT5G16420.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    51   2e-07
AT3G60050.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    51   2e-07
AT2G19280.2 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    50   2e-07
AT2G19280.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    50   2e-07
AT1G18900.3 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    50   3e-07
AT1G18900.2 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    50   3e-07
AT1G18900.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    50   3e-07
AT5G08310.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    50   3e-07
AT2G18940.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    50   3e-07
AT1G30290.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    50   3e-07
AT1G16830.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    50   4e-07
AT1G77340.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    50   4e-07
AT5G06400.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    50   5e-07
AT2G39230.1 | Symbols: LOJ | LATERAL ORGAN JUNCTION | chr2:16381...    49   5e-07
AT1G74750.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    49   6e-07
AT2G29760.1 | Symbols: OTP81 | Tetratricopeptide repeat (TPR)-li...    49   7e-07
AT2G41720.1 | Symbols: EMB2654 | Tetratricopeptide repeat (TPR)-...    49   7e-07
AT2G41720.2 | Symbols: EMB2654 | Tetratricopeptide repeat (TPR)-...    49   7e-07
AT3G25210.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    49   7e-07
AT3G61520.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    49   8e-07
AT1G11710.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    49   8e-07
AT5G28460.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    49   9e-07
AT5G28370.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    49   9e-07
AT4G19440.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    49   9e-07
AT4G19440.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    49   9e-07
AT5G46580.1 | Symbols:  | pentatricopeptide (PPR) repeat-contain...    48   1e-06
AT5G18950.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    48   1e-06
AT1G52640.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    48   1e-06
AT3G18020.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    48   1e-06
AT3G13150.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    48   2e-06
AT4G39620.2 | Symbols: EMB2453 | Tetratricopeptide repeat (TPR)-...    48   2e-06
AT4G39620.1 | Symbols: EMB2453, ATPPR5 | Tetratricopeptide repea...    48   2e-06
AT5G46680.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    48   2e-06
AT5G42310.1 | Symbols:  | Pentatricopeptide repeat (PPR-like) su...    47   2e-06
AT2G40240.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    47   2e-06
AT3G29290.1 | Symbols: emb2076 | Pentatricopeptide repeat (PPR) ...    47   3e-06
AT1G22960.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    47   4e-06
AT1G73710.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...    46   4e-06
AT5G47360.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...    45   7e-06

>AT1G12300.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:4184163-4186076 REVERSE
           LENGTH=637
          Length = 637

 Score = 85.1 bits (209), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 41/98 (41%), Positives = 62/98 (63%), Gaps = 7/98 (7%)

Query: 2   KHYSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTF 61
           K Y  V++L  QM+LKGI  N  T +I+I+C+C   ++  AFS    I K GY+P+  TF
Sbjct: 102 KQYDLVLALCKQMELKGIAHNLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITF 161

Query: 62  ATLINGFCQMGQIRPALQLLRRAEDDELVQL--KPDVV 97
           +TLING C  G++  AL+L+     D +V++  KPD++
Sbjct: 162 STLINGLCLEGRVSEALELV-----DRMVEMGHKPDLI 194



 Score = 60.5 bits (145), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 53/93 (56%), Gaps = 3/93 (3%)

Query: 8   ISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLING 67
           + L  +M L+G++ + VT N LI  +C LG++N A  +F  +  R   P++ T+  L++G
Sbjct: 423 LELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDG 482

Query: 68  FCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
            C  G+   AL++  + E     +++ D+ IY+
Sbjct: 483 LCDNGESEKALEIFEKIEKS---KMELDIGIYN 512



 Score = 58.5 bits (140), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 33/88 (37%), Positives = 48/88 (54%), Gaps = 7/88 (7%)

Query: 14  MQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQ 73
           M  KG  PN  T NILI+ YC   +I+    +F  +  RG   D  T+ TLI GFC++G+
Sbjct: 394 MVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGK 453

Query: 74  IRPALQLLRRAEDDELVQLK--PDVVIY 99
           +  A +L +     E+V  K  P++V Y
Sbjct: 454 LNVAKELFQ-----EMVSRKVPPNIVTY 476



 Score = 58.2 bits (139), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/103 (32%), Positives = 58/103 (56%), Gaps = 9/103 (8%)

Query: 2   KHYS--TVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVF 59
           KH S     +L ++M++KGI  N +T NILI  +C+ G+ +    +   + KR   P+V 
Sbjct: 275 KHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVV 334

Query: 60  TFATLINGFCQMGQIRPALQLLRRAEDDELVQ--LKPDVVIYS 100
           TF+ LI+ F + G++R A +L +     E++   + PD + Y+
Sbjct: 335 TFSVLIDSFVKEGKLREAEELHK-----EMIHRGIAPDTITYT 372



 Score = 51.2 bits (121), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 41/74 (55%)

Query: 10  LSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFC 69
           L  +M  +GI P+ +T   LID +C    ++ A  +   +  +G  P++ TF  LING+C
Sbjct: 355 LHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYC 414

Query: 70  QMGQIRPALQLLRR 83
           +  +I   L+L R+
Sbjct: 415 KANRIDDGLELFRK 428



 Score = 49.7 bits (117), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 50/93 (53%), Gaps = 3/93 (3%)

Query: 8   ISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLING 67
           + L  +M+ + I  + V  +I+ID  C  G ++ AF++F  +  +G   ++ T+  LI G
Sbjct: 248 MELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGG 307

Query: 68  FCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           FC  G+     +LLR   D    ++ P+VV +S
Sbjct: 308 FCNAGRWDDGAKLLR---DMIKRKINPNVVTFS 337



 Score = 48.5 bits (114), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 3/96 (3%)

Query: 5   STVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATL 64
           S  + L  +M   G  P+ +T N L++  C  G+   A  +   + + G QP+  T+  +
Sbjct: 175 SEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPV 234

Query: 65  INGFCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           +N  C+ GQ   A++LLR+ E+     +K D V YS
Sbjct: 235 LNVMCKSGQTALAMELLRKMEER---NIKLDAVKYS 267



 Score = 47.8 bits (112), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 39/72 (54%)

Query: 10  LSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFC 69
           L   M  + I PN VT ++LID +   G++  A  +   +  RG  PD  T+ +LI+GFC
Sbjct: 320 LLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFC 379

Query: 70  QMGQIRPALQLL 81
           +   +  A Q++
Sbjct: 380 KENHLDKANQMV 391


>AT1G12620.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:4294883-4296748 REVERSE
           LENGTH=621
          Length = 621

 Score = 82.8 bits (203), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 38/82 (46%), Positives = 52/82 (63%)

Query: 2   KHYSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTF 61
           K Y  V+ L  QM+LKGI  N  T +I+I+C C   +++ AFS    I K GY+PD  TF
Sbjct: 86  KQYDLVLDLCKQMELKGIAHNLYTLSIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTF 145

Query: 62  ATLINGFCQMGQIRPALQLLRR 83
           +TLING C  G++  AL+L+ R
Sbjct: 146 STLINGLCLEGRVSEALELVDR 167



 Score = 59.7 bits (143), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 7/88 (7%)

Query: 14  MQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQ 73
           M  KG  PN  T NILI+ YC    I+    +F  +  RG   D  T+ TLI GFC++G+
Sbjct: 378 MVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGK 437

Query: 74  IRPALQLLRRAEDDELV--QLKPDVVIY 99
           +  A +L +     E+V  +++PD+V Y
Sbjct: 438 LEVAKELFQ-----EMVSRRVRPDIVSY 460



 Score = 58.9 bits (141), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 53/93 (56%), Gaps = 3/93 (3%)

Query: 8   ISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLING 67
           + L  +M L+G++ + VT N LI  +C LG++  A  +F  +  R  +PD+ ++  L++G
Sbjct: 407 LELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDG 466

Query: 68  FCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
            C  G+   AL++  + E     +++ D+ IY+
Sbjct: 467 LCDNGEPEKALEIFEKIEKS---KMELDIGIYN 496



 Score = 54.7 bits (130), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 52/93 (55%), Gaps = 3/93 (3%)

Query: 8   ISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLING 67
           + L  +M+ + I  + V  +I+ID  C  G ++ AF++F  +  +G++ D+  + TLI G
Sbjct: 232 MELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRG 291

Query: 68  FCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           FC  G+     +LLR   D    ++ PDVV +S
Sbjct: 292 FCYAGRWDDGAKLLR---DMIKRKITPDVVAFS 321



 Score = 52.0 bits (123), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 41/74 (55%)

Query: 10  LSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFC 69
           L  +M  +GI P+ VT   LID +C   Q++ A  +   +  +G  P++ TF  LING+C
Sbjct: 339 LHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYC 398

Query: 70  QMGQIRPALQLLRR 83
           +   I   L+L R+
Sbjct: 399 KANLIDDGLELFRK 412



 Score = 49.7 bits (117), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/96 (29%), Positives = 51/96 (53%), Gaps = 3/96 (3%)

Query: 5   STVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATL 64
           S  + L  +M   G  P  +T N L++  C  G+++ A  +   + + G+QP+  T+  +
Sbjct: 159 SEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPV 218

Query: 65  INGFCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           +   C+ GQ   A++LLR+ E+    ++K D V YS
Sbjct: 219 LKVMCKSGQTALAMELLRKMEER---KIKLDAVKYS 251



 Score = 49.3 bits (116), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 39/72 (54%)

Query: 10  LSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFC 69
           L   M  + I P+ V  + LIDC+   G++  A  +   + +RG  PD  T+ +LI+GFC
Sbjct: 304 LLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFC 363

Query: 70  QMGQIRPALQLL 81
           +  Q+  A  +L
Sbjct: 364 KENQLDKANHML 375



 Score = 49.3 bits (116), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 51/94 (54%), Gaps = 7/94 (7%)

Query: 9   SLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGF 68
           +L ++M++KG   + +    LI  +C+ G+ +    +   + KR   PDV  F+ LI+ F
Sbjct: 268 NLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCF 327

Query: 69  CQMGQIRPALQLLRRAEDDELVQ--LKPDVVIYS 100
            + G++R A +L +     E++Q  + PD V Y+
Sbjct: 328 VKEGKLREAEELHK-----EMIQRGISPDTVTYT 356



 Score = 47.4 bits (111), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 37/61 (60%)

Query: 27  NILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQIRPALQLLRRAED 86
           NI+I   C+  +++ A+ +F ++  +G +PDV T+  +I G C+ G +  A  L R+ E+
Sbjct: 496 NIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEE 555

Query: 87  D 87
           D
Sbjct: 556 D 556


>AT1G62720.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr1:23227574-23229031 FORWARD
           LENGTH=485
          Length = 485

 Score = 82.8 bits (203), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 41/99 (41%), Positives = 62/99 (62%), Gaps = 3/99 (3%)

Query: 2   KHYSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTF 61
           K+Y  VISL H M++ GI  +  + NI+I+C C   +   A SV   + K GY+PDV T 
Sbjct: 83  KNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTV 142

Query: 62  ATLINGFCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           ++LINGFCQ  ++  A+ L+ + E+   +  +PDVVIY+
Sbjct: 143 SSLINGFCQGNRVFDAIDLVSKMEE---MGFRPDVVIYN 178



 Score = 61.2 bits (147), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 54/101 (53%), Gaps = 9/101 (8%)

Query: 3   HYSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFA 62
            +S    L   M ++ I+PN +T   +ID +   G+ + A  ++  + +R   PDVFT+ 
Sbjct: 224 RWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYN 283

Query: 63  TLINGFCQMGQIRPALQLLRRAEDDELVQLK---PDVVIYS 100
           +LING C  G++  A Q+L      +L+  K   PDVV Y+
Sbjct: 284 SLINGLCMHGRVDEAKQML------DLMVTKGCLPDVVTYN 318



 Score = 55.5 bits (132), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 47/83 (56%)

Query: 10  LSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFC 69
           L   MQ   I  +  T NI+I   C +G +  A+ +F ++  +G +PDV ++ T+I+GFC
Sbjct: 403 LFENMQKSEIELDITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFC 462

Query: 70  QMGQIRPALQLLRRAEDDELVQL 92
           +  Q   +  L R+ ++D L+ L
Sbjct: 463 RKRQWDKSDLLYRKMQEDGLLPL 485



 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 49/93 (52%), Gaps = 3/93 (3%)

Query: 8   ISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLING 67
           I L  +M+  G  P+ V  N +ID  C +G +N A  +F  + + G + D  T+ +L+ G
Sbjct: 159 IDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVRADAVTYNSLVAG 218

Query: 68  FCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
            C  G+   A +L+R   D  +  + P+V+ ++
Sbjct: 219 LCCSGRWSDAARLMR---DMVMRDIVPNVITFT 248



 Score = 52.4 bits (124), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 3/98 (3%)

Query: 3   HYSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFA 62
            +S  + L  +M  + + P+  T N LI+  C  G+++ A  +   +  +G  PDV T+ 
Sbjct: 259 KFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYN 318

Query: 63  TLINGFCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           TLINGFC+  ++    +L R      LV    D + Y+
Sbjct: 319 TLINGFCKSKRVDEGTKLFREMAQRGLV---GDTITYN 353



 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 6/87 (6%)

Query: 14  MQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQ 73
           M  KG +P+ VT N LI+ +C   +++    +F  + +RG   D  T+ T+I G+ Q G+
Sbjct: 305 MVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGR 364

Query: 74  IRPALQLLRRAEDDELVQLKPDVVIYS 100
              A ++  R +       +P++  YS
Sbjct: 365 PDAAQEIFSRMDS------RPNIRTYS 385


>AT5G16640.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:5461031-5462545 FORWARD
           LENGTH=504
          Length = 504

 Score = 81.6 bits (200), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 41/102 (40%), Positives = 62/102 (60%), Gaps = 7/102 (6%)

Query: 1   MKHYSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFT 60
           MK Y  VI L  QMQ+ GI  N  T NIL++C+C   Q++ A S    + K G++P + T
Sbjct: 94  MKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCFCRCSQLSLALSFLGKMIKLGHEPSIVT 153

Query: 61  FATLINGFCQMGQIRPALQLLRRAEDDELVQL--KPDVVIYS 100
           F +L+NGFC+  ++  AL +      D++V +  KP+VVIY+
Sbjct: 154 FGSLLNGFCRGDRVYDALYMF-----DQMVGMGYKPNVVIYN 190



 Score = 55.1 bits (131), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 53/103 (51%), Gaps = 11/103 (10%)

Query: 2   KHYSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTF 61
           K     + L ++M+  GI P+ VT N LI   C  G+ + A  + + + KR   PDVFTF
Sbjct: 200 KQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKREIYPDVFTF 259

Query: 62  ATLINGFCQMGQIRPA----LQLLRRAEDDELVQLKPDVVIYS 100
             LI+   + G++  A     +++RR+       L PD+V YS
Sbjct: 260 NALIDACVKEGRVSEAEEFYEEMIRRS-------LDPDIVTYS 295



 Score = 55.1 bits (131), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 3/88 (3%)

Query: 13  QMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMG 72
           +M  +G++ N VT  ILI  YC  G++N A  +F  +   G  P++ T+  L++G C  G
Sbjct: 351 EMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNG 410

Query: 73  QIRPALQLLRRAEDDELVQLKPDVVIYS 100
           +I  AL +L    D +   +  D+V Y+
Sbjct: 411 KIEKALVIL---ADMQKNGMDADIVTYN 435



 Score = 52.4 bits (124), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 3/87 (3%)

Query: 14  MQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQ 73
           M  KG  P+ VT +ILI+ YC   ++     +F  + +RG   +  T+  LI G+C+ G+
Sbjct: 317 MVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGK 376

Query: 74  IRPALQLLRRAEDDELVQLKPDVVIYS 100
           +  A ++ RR        + P+++ Y+
Sbjct: 377 LNVAEEIFRRM---VFCGVHPNIITYN 400



 Score = 51.6 bits (122), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 45/78 (57%)

Query: 13  QMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMG 72
            MQ  G+  + VT NI+I   C  G++  A+ ++ ++  +G  PD++T+ T++ G  + G
Sbjct: 421 DMQKNGMDADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQGLMPDIWTYTTMMLGLYKKG 480

Query: 73  QIRPALQLLRRAEDDELV 90
             R A  L R+ ++D ++
Sbjct: 481 LRREADALFRKMKEDGIL 498



 Score = 50.4 bits (119), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 3/89 (3%)

Query: 12  HQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQM 71
            +M   G+ PN +T N+L+   C  G+I  A  + A ++K G   D+ T+  +I G C+ 
Sbjct: 385 RRMVFCGVHPNIITYNVLLHGLCDNGKIEKALVILADMQKNGMDADIVTYNIIIRGMCKA 444

Query: 72  GQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           G++  A  +        L+   PD+  Y+
Sbjct: 445 GEVADAWDIYCSLNCQGLM---PDIWTYT 470



 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 3/88 (3%)

Query: 13  QMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMG 72
           QM   G  PN V  N +ID  C   Q++ A  +   + K G  PDV T+ +LI+G C  G
Sbjct: 176 QMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSG 235

Query: 73  QIRPALQLLRRAEDDELVQLKPDVVIYS 100
           +   A +++      E+    PDV  ++
Sbjct: 236 RWSDATRMVSCMTKREIY---PDVFTFN 260


>AT3G22470.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:7966066-7967925 REVERSE
           LENGTH=619
          Length = 619

 Score = 80.9 bits (198), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/101 (40%), Positives = 59/101 (58%), Gaps = 7/101 (6%)

Query: 2   KHYSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTF 61
           K Y  V+     M+L GI  +  T  I+I+CYC   ++ FAFSV     K GY+PD  TF
Sbjct: 84  KQYDLVLGFCKGMELNGIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITF 143

Query: 62  ATLINGFCQMGQIRPALQLLRRAEDDELVQLK--PDVVIYS 100
           +TL+NGFC  G++  A+ L+     D +V++K  PD+V  S
Sbjct: 144 STLVNGFCLEGRVSEAVALV-----DRMVEMKQRPDLVTVS 179



 Score = 58.5 bits (140), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 46/82 (56%)

Query: 8   ISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLING 67
           + L  ++  KG++PN +T N L+  +C  G++N A  +F  +  RG  P V T+  L++G
Sbjct: 405 MRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDG 464

Query: 68  FCQMGQIRPALQLLRRAEDDEL 89
            C  G++  AL++  + +   +
Sbjct: 465 LCDNGELNKALEIFEKMQKSRM 486



 Score = 56.6 bits (135), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 7/88 (7%)

Query: 14  MQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQ 73
           M  KG  P+ VT +ILI+ YC   +++    +F  I  +G  P+  T+ TL+ GFCQ G+
Sbjct: 376 MVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGK 435

Query: 74  IRPALQLLRRAEDDELVQ--LKPDVVIY 99
           +  A +L +     E+V   + P VV Y
Sbjct: 436 LNAAKELFQ-----EMVSRGVPPSVVTY 458



 Score = 55.8 bits (133), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 51/91 (56%), Gaps = 3/91 (3%)

Query: 10  LSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFC 69
           L ++M  +GI P+ +T N LID +C    ++ A  +F  +  +G +PD+ T++ LIN +C
Sbjct: 337 LYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYC 396

Query: 70  QMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           +  ++   ++L R      L+   P+ + Y+
Sbjct: 397 KAKRVDDGMRLFREISSKGLI---PNTITYN 424



 Score = 52.0 bits (123), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 49/93 (52%), Gaps = 3/93 (3%)

Query: 8   ISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLING 67
           + L  +M+ + I  + V  +I+ID  C  G  + A S+F  +  +G + DV T+++LI G
Sbjct: 230 LDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGG 289

Query: 68  FCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
            C  G+     ++LR      ++   PDVV +S
Sbjct: 290 LCNDGKWDDGAKMLREMIGRNII---PDVVTFS 319



 Score = 50.4 bits (119), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 38/61 (62%)

Query: 27  NILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQIRPALQLLRRAED 86
           NI+I   C+  +++ A+S+F ++  +G +PDV T+  +I G C+ G +  A  L R+ ++
Sbjct: 494 NIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKE 553

Query: 87  D 87
           D
Sbjct: 554 D 554



 Score = 49.3 bits (116), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 7/90 (7%)

Query: 13  QMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMG 72
           +M  + I+P+ VT + LID +   G++  A  ++  +  RG  PD  T+ +LI+GFC+  
Sbjct: 305 EMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKEN 364

Query: 73  QIRPALQLLRRAEDDELVQ--LKPDVVIYS 100
            +  A Q+      D +V    +PD+V YS
Sbjct: 365 CLHEANQMF-----DLMVSKGCEPDIVTYS 389



 Score = 48.5 bits (114), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 3/96 (3%)

Query: 5   STVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATL 64
           S  ++L  +M      P+ VT + LI+  C  G+++ A  +   + + G+QPD  T+  +
Sbjct: 157 SEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPV 216

Query: 65  INGFCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           +N  C+ G    AL L R+ E+     +K  VV YS
Sbjct: 217 LNRLCKSGNSALALDLFRKMEER---NIKASVVQYS 249



 Score = 48.1 bits (113), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 3/91 (3%)

Query: 10  LSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFC 69
           L  +M  +G+ P+ VT  IL+D  C  G++N A  +F  ++K      +  +  +I+G C
Sbjct: 442 LFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMC 501

Query: 70  QMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
              ++  A  L     D     +KPDVV Y+
Sbjct: 502 NASKVDDAWSLFCSLSDK---GVKPDVVTYN 529


>AT1G62680.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:23208247-23209893 REVERSE
           LENGTH=548
          Length = 548

 Score = 80.5 bits (197), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/102 (37%), Positives = 64/102 (62%), Gaps = 7/102 (6%)

Query: 1   MKHYSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFT 60
           +K Y  VISL  +M++ GI  +  T NI+I+C+C   Q++ A S+   + K GY+PD  T
Sbjct: 98  LKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVT 157

Query: 61  FATLINGFCQMGQIRPALQLLRRAEDDELVQL--KPDVVIYS 100
             +L+NGFC+  ++  A+ L+     D++V++  KPD+V Y+
Sbjct: 158 IGSLVNGFCRRNRVSDAVSLV-----DKMVEIGYKPDIVAYN 194



 Score = 60.1 bits (144), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 3/96 (3%)

Query: 5   STVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATL 64
           S  +SL  +M   G  P+ V  N +ID  C   ++N AF  F  I ++G +P+V T+  L
Sbjct: 172 SDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTAL 231

Query: 65  INGFCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           +NG C   +   A +LL    D    ++ P+V+ YS
Sbjct: 232 VNGLCNSSRWSDAARLL---SDMIKKKITPNVITYS 264



 Score = 58.2 bits (139), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/88 (35%), Positives = 46/88 (52%), Gaps = 3/88 (3%)

Query: 13  QMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMG 72
           QM   GI P+  T NIL+   C  G++  A  +F  ++KR    D+ T+ T+I G C+ G
Sbjct: 390 QMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTG 449

Query: 73  QIRPALQLLRRAEDDELVQLKPDVVIYS 100
           ++  A  L        L  LKPD+V Y+
Sbjct: 450 KVEEAWSLFCSL---SLKGLKPDIVTYT 474



 Score = 51.2 bits (121), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 49/93 (52%), Gaps = 3/93 (3%)

Query: 8   ISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLING 67
           + L  +M  +G++ N VT N LI  +   G ++ A   F+ +   G  PD++T+  L+ G
Sbjct: 350 MKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGG 409

Query: 68  FCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
            C  G++  AL +    ED +  ++  D+V Y+
Sbjct: 410 LCDNGELEKALVIF---EDMQKREMDLDIVTYT 439



 Score = 48.5 bits (114), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 52/90 (57%), Gaps = 7/90 (7%)

Query: 13  QMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMG 72
           +++ KGI PN VT   L++  C+  + + A  + + + K+   P+V T++ L++ F + G
Sbjct: 215 EIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNG 274

Query: 73  QIRPALQLLRRAEDDELVQLK--PDVVIYS 100
           ++  A +L      +E+V++   PD+V YS
Sbjct: 275 KVLEAKELF-----EEMVRMSIDPDIVTYS 299



 Score = 46.2 bits (108), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 40/78 (51%)

Query: 4   YSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFAT 63
           +S    L   M  K I PN +T + L+D +   G++  A  +F  + +    PD+ T+++
Sbjct: 241 WSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSS 300

Query: 64  LINGFCQMGQIRPALQLL 81
           LING C   +I  A Q+ 
Sbjct: 301 LINGLCLHDRIDEANQMF 318


>AT1G63330.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:23489840-23491519 FORWARD
           LENGTH=559
          Length = 559

 Score = 78.2 bits (191), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 37/102 (36%), Positives = 62/102 (60%), Gaps = 7/102 (6%)

Query: 1   MKHYSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFT 60
           MK +  VISL  +MQ  GI  N  T NILI+C+C   QI+ A ++   + K GY+P + T
Sbjct: 23  MKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVT 82

Query: 61  FATLINGFCQMGQIRPALQLLRRAEDDELVQL--KPDVVIYS 100
            ++L+NG+C   +I  A+ L+     D++V++  +PD + ++
Sbjct: 83  LSSLLNGYCHGKRISDAVALV-----DQMVEMGYRPDTITFT 119



 Score = 57.0 bits (136), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 3/96 (3%)

Query: 5   STVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATL 64
           S  ++L  +M  +G  PN VT  ++++  C  G I+ AF++   +     + DV  F T+
Sbjct: 132 SEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTI 191

Query: 65  INGFCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           I+  C+   +  AL L +  E      ++P+VV YS
Sbjct: 192 IDSLCKYRHVDDALNLFKEMETK---GIRPNVVTYS 224



 Score = 55.5 bits (132), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 55/101 (54%), Gaps = 7/101 (6%)

Query: 2   KHYSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTF 61
           +H    ++L  +M+ KGI PN VT + LI C C  G+ + A  + + + ++   P++ TF
Sbjct: 199 RHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTF 258

Query: 62  ATLINGFCQMGQIRPALQLLRRAEDDELVQ--LKPDVVIYS 100
             LI+ F + G+   A +L      D++++  + PD+  Y+
Sbjct: 259 NALIDAFVKEGKFVEAEKL-----HDDMIKRSIDPDIFTYN 294



 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 40/80 (50%)

Query: 3   HYSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFA 62
            +S    L   M  K I PN VT N LID +   G+   A  +   + KR   PD+FT+ 
Sbjct: 235 RWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYN 294

Query: 63  TLINGFCQMGQIRPALQLLR 82
           +LINGFC   ++  A Q+  
Sbjct: 295 SLINGFCMHDRLDKAKQMFE 314



 Score = 53.9 bits (128), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 3/88 (3%)

Query: 13  QMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMG 72
           QM   G+ P+ +T +IL+D  C+ G++  A  VF  ++K   + D++ + T+I G C+ G
Sbjct: 385 QMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAG 444

Query: 73  QIRPALQLLRRAEDDELVQLKPDVVIYS 100
           ++     L        L  +KP+VV Y+
Sbjct: 445 KVDDGWDLFCSL---SLKGVKPNVVTYN 469



 Score = 48.9 bits (115), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 3/92 (3%)

Query: 9   SLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGF 68
            L  +M  +G++ + VT   LI    H G  + A  VF  +   G  PD+ T++ L++G 
Sbjct: 346 ELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGL 405

Query: 69  CQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           C  G++  AL++    +  E   +K D+ IY+
Sbjct: 406 CNNGKLEKALEVFDYMQKSE---IKLDIYIYT 434


>AT1G63400.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:23507320-23509053 FORWARD
           LENGTH=577
          Length = 577

 Score = 78.2 bits (191), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 37/102 (36%), Positives = 62/102 (60%), Gaps = 7/102 (6%)

Query: 1   MKHYSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFT 60
           MK +  VISL  +MQ  GI  N  T NILI+C+C   QI+ A ++   + K GY+P + T
Sbjct: 98  MKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVT 157

Query: 61  FATLINGFCQMGQIRPALQLLRRAEDDELVQL--KPDVVIYS 100
            ++L+NG+C   +I  A+ L+     D++V++  +PD + ++
Sbjct: 158 LSSLLNGYCHGKRISDAVALV-----DQMVEMGYRPDTITFT 194



 Score = 58.9 bits (141), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 3/88 (3%)

Query: 13  QMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMG 72
           QM   G+ PN +T N L+D  C  G++  A  VF  +++   +P ++T+  +I G C+ G
Sbjct: 460 QMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAG 519

Query: 73  QIRPALQLLRRAEDDELVQLKPDVVIYS 100
           ++     L        L  +KPDV+IY+
Sbjct: 520 KVEDGWDLFCSL---SLKGVKPDVIIYN 544



 Score = 56.2 bits (134), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 56/101 (55%), Gaps = 7/101 (6%)

Query: 2   KHYSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTF 61
           +H    ++L  +M+ KG+ PN +T + LI C C+  + + A  + + + +R   P+V TF
Sbjct: 274 RHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTF 333

Query: 62  ATLINGFCQMGQIRPALQLLRRAEDDELVQ--LKPDVVIYS 100
             LI+ F + G++  A +L      DE+++  + PD+  YS
Sbjct: 334 NALIDAFVKEGKLVEAEKLY-----DEMIKRSIDPDIFTYS 369



 Score = 55.1 bits (131), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 53/102 (51%), Gaps = 9/102 (8%)

Query: 2   KHYSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTF 61
           + +S    L   M  + I PN VT N LID +   G++  A  ++  + KR   PD+FT+
Sbjct: 309 ERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTY 368

Query: 62  ATLINGFCQMGQIRPALQLLRRAEDDELVQLK---PDVVIYS 100
           ++LINGFC   ++  A  +       EL+  K   P+VV Y+
Sbjct: 369 SSLINGFCMHDRLDEAKHMF------ELMISKDCFPNVVTYN 404



 Score = 54.7 bits (130), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 41/74 (55%)

Query: 14  MQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQ 73
           +Q   + P   T NI+I+  C  G++   + +F ++  +G +PDV  + T+I+GFC+ G 
Sbjct: 496 LQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFCRKGL 555

Query: 74  IRPALQLLRRAEDD 87
              A  L R+  +D
Sbjct: 556 KEEADALFRKMRED 569



 Score = 51.2 bits (121), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 49/96 (51%), Gaps = 3/96 (3%)

Query: 5   STVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATL 64
           S  ++L  +M  +G  PN VT  ++++  C  G I+ AF++   +     + +V  ++T+
Sbjct: 207 SEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTV 266

Query: 65  INGFCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           I+  C+      AL L    E+     ++P+V+ YS
Sbjct: 267 IDSLCKYRHEDDALNLFTEMENK---GVRPNVITYS 299


>AT1G62910.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:23299060-23300958 FORWARD
           LENGTH=632
          Length = 632

 Score = 77.0 bits (188), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 37/102 (36%), Positives = 61/102 (59%), Gaps = 7/102 (6%)

Query: 1   MKHYSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFT 60
           M  +  VISL  QMQ  GI  +  T +I I+C+C   Q++ A +V A + K GY+PD+ T
Sbjct: 96  MNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVT 155

Query: 61  FATLINGFCQMGQIRPALQLLRRAEDDELVQL--KPDVVIYS 100
            ++L+NG+C   +I  A+ L+     D++V++  KPD   ++
Sbjct: 156 LSSLLNGYCHSKRISDAVALV-----DQMVEMGYKPDTFTFT 192



 Score = 58.5 bits (140), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 56/101 (55%), Gaps = 7/101 (6%)

Query: 2   KHYSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTF 61
           KH    ++L  +M  KGI P+  T + LI C C+ G+ + A  + + + +R   P+V TF
Sbjct: 272 KHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTF 331

Query: 62  ATLINGFCQMGQIRPALQLLRRAEDDELVQ--LKPDVVIYS 100
           + LI+ F + G++  A +L      DE+++  + PD+  YS
Sbjct: 332 SALIDAFVKEGKLVEAEKLY-----DEMIKRSIDPDIFTYS 367



 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 3/88 (3%)

Query: 13  QMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMG 72
           QM   G+ PN +T NIL+D  C  G++  A  VF  +++   +PD++T+  +I G C+ G
Sbjct: 458 QMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAG 517

Query: 73  QIRPALQLLRRAEDDELVQLKPDVVIYS 100
           ++    +L        L  + P+V+ Y+
Sbjct: 518 KVEDGWELFCNL---SLKGVSPNVIAYN 542



 Score = 56.2 bits (134), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 3/96 (3%)

Query: 5   STVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATL 64
           S  ++L  QM  +G  P+ VT   +++  C  G I+ A S+   + K   + DV  + T+
Sbjct: 205 SEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTI 264

Query: 65  INGFCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           I+G C+   +  AL L    ++     ++PDV  YS
Sbjct: 265 IDGLCKYKHMDDALNLFTEMDNK---GIRPDVFTYS 297



 Score = 54.7 bits (130), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 42/74 (56%)

Query: 14  MQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQ 73
           +Q   + P+  T NI+I+  C  G++   + +F  +  +G  P+V  + T+I+GFC+ G 
Sbjct: 494 LQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGS 553

Query: 74  IRPALQLLRRAEDD 87
              A  LL++ ++D
Sbjct: 554 KEEADSLLKKMKED 567



 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 52/101 (51%), Gaps = 9/101 (8%)

Query: 3   HYSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFA 62
            +S    L   M  + I PN VT + LID +   G++  A  ++  + KR   PD+FT++
Sbjct: 308 RWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYS 367

Query: 63  TLINGFCQMGQIRPALQLLRRAEDDELVQLK---PDVVIYS 100
           +LINGFC   ++  A  +       EL+  K   P+VV YS
Sbjct: 368 SLINGFCMHDRLDEAKHMF------ELMISKDCFPNVVTYS 402



 Score = 52.4 bits (124), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 53/96 (55%), Gaps = 7/96 (7%)

Query: 7   VISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLIN 66
            +SL  +M+   I  + V  N +ID  C    ++ A ++F  +  +G +PDVFT+++LI+
Sbjct: 242 ALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLIS 301

Query: 67  GFCQMGQIRPALQLLRRAEDDELVQLK--PDVVIYS 100
             C  G+   A +LL      ++++ K  P+VV +S
Sbjct: 302 CLCNYGRWSDASRLL-----SDMIERKINPNVVTFS 332


>AT1G63150.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:23419399-23421288 FORWARD
           LENGTH=629
          Length = 629

 Score = 76.6 bits (187), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 37/102 (36%), Positives = 61/102 (59%), Gaps = 7/102 (6%)

Query: 1   MKHYSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFT 60
           M  +  VISL  QMQ  GI  +  T +I I+C+C   Q++ A +V A + K GY+PD+ T
Sbjct: 96  MNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVT 155

Query: 61  FATLINGFCQMGQIRPALQLLRRAEDDELVQL--KPDVVIYS 100
            ++L+NG+C   +I  A+ L+     D++V++  KPD   ++
Sbjct: 156 LSSLLNGYCHSKRISDAVALV-----DQMVEMGYKPDTFTFT 192



 Score = 62.4 bits (150), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 57/101 (56%), Gaps = 7/101 (6%)

Query: 2   KHYSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTF 61
           +H    + L  +M+ KGI PN VT N LI+C C+ G+ + A  + + + ++   P+V TF
Sbjct: 272 RHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTF 331

Query: 62  ATLINGFCQMGQIRPALQLLRRAEDDELVQ--LKPDVVIYS 100
             LI+ F + G++  A +L      +E++Q  + PD + Y+
Sbjct: 332 NALIDAFFKEGKLVEAEKL-----HEEMIQRSIDPDTITYN 367



 Score = 52.8 bits (125), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 3/99 (3%)

Query: 2   KHYSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTF 61
           K  S  ++L  QM   G  P+  T   LI       + + A ++   + +RG QPD+ T+
Sbjct: 167 KRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTY 226

Query: 62  ATLINGFCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
            T++NG C+ G I  AL LL +    E  ++K +VVI++
Sbjct: 227 GTVVNGLCKRGDIDLALNLLNKM---EAARIKANVVIFN 262



 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 48/94 (51%), Gaps = 3/94 (3%)

Query: 7   VISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLIN 66
            ++L ++M+   I  N V  N +ID  C    +  A  +F  +  +G +P+V T+ +LIN
Sbjct: 242 ALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLIN 301

Query: 67  GFCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
             C  G+   A +LL    +    ++ P+VV ++
Sbjct: 302 CLCNYGRWSDASRLLSNMLEK---KINPNVVTFN 332



 Score = 48.9 bits (115), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 39/80 (48%)

Query: 3   HYSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFA 62
            +S    L   M  K I PN VT N LID +   G++  A  +   + +R   PD  T+ 
Sbjct: 308 RWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYN 367

Query: 63  TLINGFCQMGQIRPALQLLR 82
            LINGFC   ++  A Q+ +
Sbjct: 368 LLINGFCMHNRLDEAKQMFK 387



 Score = 48.5 bits (114), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 45/81 (55%)

Query: 10  LSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFC 69
           L  +M  + I P+ +T N+LI+ +C   +++ A  +F  +  +   P++ T+ TLINGFC
Sbjct: 350 LHEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGFC 409

Query: 70  QMGQIRPALQLLRRAEDDELV 90
           +  ++   ++L R      LV
Sbjct: 410 KCKRVEDGVELFREMSQRGLV 430



 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 11/95 (11%)

Query: 11  SHQMQLKGIMPNFV-----TSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLI 65
           S QM  K ++ N V     T +IL+   C  G+++ A  +F  ++K   + ++F + T+I
Sbjct: 451 SAQMVFKQMVSNRVPTDIMTYSILLHGLCSYGKLDTALVIFKYLQKSEMELNIFIYNTMI 510

Query: 66  NGFCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
            G C+ G++  A  L         + +KPDVV Y+
Sbjct: 511 EGMCKAGKVGEAWDLFCS------LSIKPDVVTYN 539


>AT1G63130.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:23412854-23414746 FORWARD
           LENGTH=630
          Length = 630

 Score = 75.9 bits (185), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 35/81 (43%), Positives = 50/81 (61%)

Query: 1   MKHYSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFT 60
           M  +  VISL  QMQ  GI  N  T +ILI+C+C   Q++ A +V A + K GY+PD+ T
Sbjct: 94  MNKFDLVISLGEQMQNLGISHNLYTYSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVT 153

Query: 61  FATLINGFCQMGQIRPALQLL 81
             +L+NGFC   +I  A+ L+
Sbjct: 154 LNSLLNGFCHGNRISDAVSLV 174



 Score = 61.6 bits (148), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 58/101 (57%), Gaps = 7/101 (6%)

Query: 2   KHYSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTF 61
           K+ +  ++L  +M  KGI PN VT N LI C C+ G+ + A  + + + +R   P+V TF
Sbjct: 270 KNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTF 329

Query: 62  ATLINGFCQMGQIRPALQLLRRAEDDELVQ--LKPDVVIYS 100
           + LI+ F + G++  A +L      DE+++  + PD+  YS
Sbjct: 330 SALIDAFVKEGKLVEAEKLY-----DEMIKRSIDPDIFTYS 365



 Score = 59.7 bits (143), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 50/88 (56%), Gaps = 3/88 (3%)

Query: 13  QMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMG 72
           QM   G++P+ +T +IL+D  C+ G++  A  VF  +++   +PD++T+  +I G C+ G
Sbjct: 456 QMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAG 515

Query: 73  QIRPALQLLRRAEDDELVQLKPDVVIYS 100
           ++     L        L  +KP+VV Y+
Sbjct: 516 KVEDGWDLFCSL---SLKGVKPNVVTYT 540



 Score = 57.0 bits (136), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 58/126 (46%), Gaps = 39/126 (30%)

Query: 10  LSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLI---- 65
           L+  M+L G  P+ VT N L++ +CH  +I+ A S+   + + GYQPD FTF TLI    
Sbjct: 139 LAKMMKL-GYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLF 197

Query: 66  -------------------------------NGFCQMGQIRPALQLLRRAEDDELVQLKP 94
                                          NG C+ G I  AL LL++ E     +++P
Sbjct: 198 RHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQG---KIEP 254

Query: 95  DVVIYS 100
            VVIY+
Sbjct: 255 GVVIYN 260



 Score = 53.1 bits (126), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 22/83 (26%), Positives = 46/83 (55%)

Query: 5   STVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATL 64
            T + +   +Q   + P+  T NI+I+  C  G++   + +F ++  +G +P+V T+ T+
Sbjct: 483 ETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTM 542

Query: 65  INGFCQMGQIRPALQLLRRAEDD 87
           ++GFC+ G    A  L R  +++
Sbjct: 543 MSGFCRKGLKEEADALFREMKEE 565



 Score = 52.8 bits (125), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 52/101 (51%), Gaps = 9/101 (8%)

Query: 3   HYSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFA 62
            +S    L   M  + I PN VT + LID +   G++  A  ++  + KR   PD+FT++
Sbjct: 306 RWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYS 365

Query: 63  TLINGFCQMGQIRPALQLLRRAEDDELVQLK---PDVVIYS 100
           +LINGFC   ++  A  +       EL+  K   P+VV Y+
Sbjct: 366 SLINGFCMHDRLDEAKHMF------ELMISKDCFPNVVTYN 400



 Score = 52.8 bits (125), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 3/94 (3%)

Query: 7   VISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLIN 66
            +SL  +M+   I P  V  N +ID  C+   +N A ++F  +  +G +P+V T+ +LI 
Sbjct: 240 ALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIR 299

Query: 67  GFCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
             C  G+   A +LL    D    ++ P+VV +S
Sbjct: 300 CLCNYGRWSDASRLL---SDMIERKINPNVVTFS 330


>AT1G63080.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:23388884-23390728 REVERSE
           LENGTH=614
          Length = 614

 Score = 75.5 bits (184), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 60/102 (58%), Gaps = 7/102 (6%)

Query: 1   MKHYSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFT 60
           MK +  VIS   +M++ G+  N  T NI+I+C C   Q++FA ++   + K GY P + T
Sbjct: 78  MKKFDLVISFGEKMEILGVSHNLYTYNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVT 137

Query: 61  FATLINGFCQMGQIRPALQLLRRAEDDELVQL--KPDVVIYS 100
             +L+NGFC   +I  A+ L+     D++V++  +PD V ++
Sbjct: 138 LNSLLNGFCHGNRISEAVALV-----DQMVEMGYQPDTVTFT 174



 Score = 58.5 bits (140), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 3/88 (3%)

Query: 13  QMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMG 72
           QM   G+ PN +T N L+D  C  G++  A  VF  ++K   +PD++T+  +  G C+ G
Sbjct: 440 QMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAG 499

Query: 73  QIRPALQLLRRAEDDELVQLKPDVVIYS 100
           ++     L        L  +KPDV+ Y+
Sbjct: 500 KVEDGWDLFCSL---SLKGVKPDVIAYN 524



 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 57/101 (56%), Gaps = 7/101 (6%)

Query: 2   KHYSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTF 61
           +H    ++L  +M  KGI P+  T + LI C C+ G+ + A  + + + +R   P+V TF
Sbjct: 254 RHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTF 313

Query: 62  ATLINGFCQMGQIRPALQLLRRAEDDELVQ--LKPDVVIYS 100
            +LI+ F + G++  A +L      DE++Q  + P++V Y+
Sbjct: 314 NSLIDAFAKEGKLIEAEKLF-----DEMIQRSIDPNIVTYN 349



 Score = 52.8 bits (125), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 42/73 (57%)

Query: 10  LSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFC 69
           L  +M  + I PN VT N LI+ +C   +++ A  +F  +  +   PDV T+ TLINGFC
Sbjct: 332 LFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFC 391

Query: 70  QMGQIRPALQLLR 82
           +  ++   ++L R
Sbjct: 392 KAKKVVDGMELFR 404



 Score = 52.8 bits (125), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 3/96 (3%)

Query: 5   STVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATL 64
           S  ++L  QM   G  P+ VT   L+       + + A ++   +  +G QPD+ T+  +
Sbjct: 152 SEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAV 211

Query: 65  INGFCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           ING C+ G+   AL LL + E     +++ DVVIYS
Sbjct: 212 INGLCKRGEPDLALNLLNKMEKG---KIEADVVIYS 244



 Score = 52.0 bits (123), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 3/98 (3%)

Query: 3   HYSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFA 62
            +S    L   M  + I PN VT N LID +   G++  A  +F  + +R   P++ T+ 
Sbjct: 290 RWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYN 349

Query: 63  TLINGFCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           +LINGFC   ++  A Q+       + +   PDVV Y+
Sbjct: 350 SLINGFCMHDRLDEAQQIFTLMVSKDCL---PDVVTYN 384



 Score = 51.2 bits (121), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 21/74 (28%), Positives = 41/74 (55%)

Query: 14  MQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQ 73
           +Q   + P+  T NI+ +  C  G++   + +F ++  +G +PDV  + T+I+GFC+ G 
Sbjct: 476 LQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGL 535

Query: 74  IRPALQLLRRAEDD 87
              A  L  + ++D
Sbjct: 536 KEEAYTLFIKMKED 549



 Score = 48.9 bits (115), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 52/94 (55%), Gaps = 3/94 (3%)

Query: 7   VISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLIN 66
            ++L ++M+   I  + V  + +ID  C    ++ A ++F  +  +G +PDVFT+++LI+
Sbjct: 224 ALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLIS 283

Query: 67  GFCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
             C  G+   A +LL    D    ++ P+VV ++
Sbjct: 284 CLCNYGRWSDASRLL---SDMLERKINPNVVTFN 314


>AT5G41170.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr5:16478860-16480443 REVERSE
           LENGTH=527
          Length = 527

 Score = 74.7 bits (182), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 60/100 (60%), Gaps = 3/100 (3%)

Query: 1   MKHYSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFT 60
           MK +  VI+L   +Q+ G+  +  T N+L++C+C   Q   A S    + K G++PD+ T
Sbjct: 85  MKKFDVVINLCDHLQIMGVSHDLYTCNLLMNCFCQSSQPYLASSFLGKMMKLGFEPDIVT 144

Query: 61  FATLINGFCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           F +LINGFC   ++  A+ ++ +  +   + +KPDVV+Y+
Sbjct: 145 FTSLINGFCLGNRMEEAMSMVNQMVE---MGIKPDVVMYT 181



 Score = 67.8 bits (164), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 52/94 (55%), Gaps = 3/94 (3%)

Query: 7   VISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLIN 66
            +S+ +QM   GI P+ V    +ID  C  G +N+A S+F  +   G +PDV  + +L+N
Sbjct: 161 AMSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVN 220

Query: 67  GFCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           G C  G+ R A  LLR        ++KPDV+ ++
Sbjct: 221 GLCNSGRWRDADSLLRGMTKR---KIKPDVITFN 251



 Score = 52.4 bits (124), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 25/99 (25%), Positives = 51/99 (51%)

Query: 2   KHYSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTF 61
           K     + + ++M  KG+  N +T   LI  +  +G+ N A  VF+ +  RG  P++ T+
Sbjct: 331 KKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTY 390

Query: 62  ATLINGFCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
             L++  C  G+++ AL +    +  E+  + P++  Y+
Sbjct: 391 NVLLHCLCYNGKVKKALMIFEDMQKREMDGVAPNIWTYN 429



 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 3/92 (3%)

Query: 9   SLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGF 68
           SL   M  + I P+ +T N LID +   G+   A  ++  + +    P++FT+ +LINGF
Sbjct: 233 SLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGF 292

Query: 69  CQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           C  G +  A Q+    E        PDVV Y+
Sbjct: 293 CMEGCVDEARQMFYLMETKGCF---PDVVAYT 321



 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 53/100 (53%), Gaps = 7/100 (7%)

Query: 3   HYSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFA 62
           H +  +SL  QM+  GI P+ V    L++  C+ G+   A S+   + KR  +PDV TF 
Sbjct: 192 HVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVITFN 251

Query: 63  TLINGFCQMGQIRPALQLLRRAEDDELVQLK--PDVVIYS 100
            LI+ F + G+   A +L      +E++++   P++  Y+
Sbjct: 252 ALIDAFVKEGKFLDAEELY-----NEMIRMSIAPNIFTYT 286



 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 40/72 (55%)

Query: 9   SLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGF 68
            L ++M    I PN  T   LI+ +C  G ++ A  +F  +  +G  PDV  + +LINGF
Sbjct: 268 ELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGF 327

Query: 69  CQMGQIRPALQL 80
           C+  ++  A+++
Sbjct: 328 CKCKKVDDAMKI 339



 Score = 46.6 bits (109), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 3/89 (3%)

Query: 12  HQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQM 71
            + ++ G+ PN  T N+L+   C+ G++  A  VF  +RKR     + T+  +I G C+ 
Sbjct: 414 QKREMDGVAPNIWTYNVLLHGLCYNGKLEKALMVFEDMRKREMDIGIITYTIIIQGMCKA 473

Query: 72  GQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           G+++ A+ L           +KP+VV Y+
Sbjct: 474 GKVKNAVNLFCSLPSK---GVKPNVVTYT 499


>AT1G12700.1 | Symbols:  | ATP binding;nucleic acid
           binding;helicases | chr1:4323722-4326227 REVERSE
           LENGTH=735
          Length = 735

 Score = 74.3 bits (181), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/99 (37%), Positives = 57/99 (57%), Gaps = 3/99 (3%)

Query: 2   KHYSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTF 61
           K ++ V+    Q++L GI  N  T NI+I+C+C   +  FA+SV   + K GY+PD  TF
Sbjct: 102 KQFNLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTF 161

Query: 62  ATLINGFCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
            TLI G    G++  A+ L+ R  ++     +PDVV Y+
Sbjct: 162 NTLIKGLFLEGKVSEAVVLVDRMVEN---GCQPDVVTYN 197



 Score = 55.1 bits (131), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 48/84 (57%), Gaps = 3/84 (3%)

Query: 17  KGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQIRP 76
           +G++ N VT +IL+  +C  G+I  A  +F  +   G  PDV T+  L++G C  G++  
Sbjct: 397 RGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEK 456

Query: 77  ALQLLRRAEDDELVQLKPDVVIYS 100
           AL++    ED +  ++   +V+Y+
Sbjct: 457 ALEIF---EDLQKSKMDLGIVMYT 477



 Score = 53.1 bits (126), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 3/91 (3%)

Query: 10  LSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFC 69
           L  +M  +GI PN +T N L+D YC   +++ A ++   + +    PD+ TF +LI G+C
Sbjct: 320 LYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYC 379

Query: 70  QMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
            + ++   +++ R      LV    + V YS
Sbjct: 380 MVKRVDDGMKVFRNISKRGLV---ANAVTYS 407



 Score = 53.1 bits (126), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 7/81 (8%)

Query: 21  PNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQIRPALQL 80
           P+ VT   LI  YC + +++    VF  I KRG   +  T++ L+ GFCQ G+I+ A +L
Sbjct: 366 PDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEEL 425

Query: 81  LRRAEDDELVQ--LKPDVVIY 99
            +     E+V   + PDV+ Y
Sbjct: 426 FQ-----EMVSHGVLPDVMTY 441



 Score = 52.4 bits (124), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 3/96 (3%)

Query: 5   STVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATL 64
           S  + L  +M   G  P+ VT N +++  C  G  + A  +   + +R  + DVFT++T+
Sbjct: 175 SEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTI 234

Query: 65  INGFCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           I+  C+ G I  A+ L +  E      +K  VV Y+
Sbjct: 235 IDSLCRDGCIDAAISLFKEMETK---GIKSSVVTYN 267



 Score = 51.6 bits (122), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 52/93 (55%), Gaps = 7/93 (7%)

Query: 10  LSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFC 69
           L   M  + I+PN +T N+L+D +   G++  A  ++  +  RG  P++ T+ TL++G+C
Sbjct: 285 LLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYC 344

Query: 70  QMGQIRPALQLLRRAEDDELVQLK--PDVVIYS 100
              ++  A  +L     D +V+ K  PD+V ++
Sbjct: 345 MQNRLSEANNML-----DLMVRNKCSPDIVTFT 372



 Score = 47.4 bits (111), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 49/96 (51%), Gaps = 3/96 (3%)

Query: 5   STVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATL 64
           S  + L  +M+ + +  +  T + +ID  C  G I+ A S+F  +  +G +  V T+ +L
Sbjct: 210 SLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSL 269

Query: 65  INGFCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           + G C+ G+      LL+     E+V   P+V+ ++
Sbjct: 270 VRGLCKAGKWNDGALLLKDMVSREIV---PNVITFN 302



 Score = 47.0 bits (110), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 39/64 (60%)

Query: 24  VTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQIRPALQLLRR 83
           V    +I+  C  G++  A+++F ++  +G +P+V T+  +I+G C+ G +  A  LLR+
Sbjct: 474 VMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRK 533

Query: 84  AEDD 87
            E+D
Sbjct: 534 MEED 537


>AT1G12775.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:4353906-4355840 FORWARD
           LENGTH=644
          Length = 644

 Score = 74.3 bits (181), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/82 (40%), Positives = 51/82 (62%)

Query: 2   KHYSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTF 61
           K Y  V++L  QM+ KGI  +  T +I+I+C+C   ++++AFS    I K GY+PD   F
Sbjct: 102 KQYELVLALCKQMESKGIAHSIYTLSIMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIF 161

Query: 62  ATLINGFCQMGQIRPALQLLRR 83
            TL+NG C   ++  AL+L+ R
Sbjct: 162 NTLLNGLCLECRVSEALELVDR 183



 Score = 58.2 bits (139), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 52/92 (56%), Gaps = 3/92 (3%)

Query: 8   ISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLING 67
           + L  +M L+G++ N VT N L+  +C  G++  A  +F  +  R  +PD+ ++  L++G
Sbjct: 423 LELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDG 482

Query: 68  FCQMGQIRPALQLLRRAEDDELVQLKPDVVIY 99
            C  G++  AL++  + E     +++ D+ IY
Sbjct: 483 LCDNGELEKALEIFGKIEKS---KMELDIGIY 511



 Score = 58.2 bits (139), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/73 (36%), Positives = 41/73 (56%)

Query: 10  LSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFC 69
           L  +M  +GI PN +T N LID +C   ++  A  +   +  +G  PD+ TF  LING+C
Sbjct: 355 LLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYC 414

Query: 70  QMGQIRPALQLLR 82
           +  +I   L+L R
Sbjct: 415 KANRIDDGLELFR 427



 Score = 57.0 bits (136), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/94 (34%), Positives = 52/94 (55%), Gaps = 7/94 (7%)

Query: 8   ISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLING 67
           I +   M  KG  P+ +T NILI+ YC   +I+    +F  +  RG   +  T+ TL+ G
Sbjct: 388 IQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQG 447

Query: 68  FCQMGQIRPALQLLRRAEDDELV--QLKPDVVIY 99
           FCQ G++  A +L +     E+V  +++PD+V Y
Sbjct: 448 FCQSGKLEVAKKLFQ-----EMVSRRVRPDIVSY 476



 Score = 55.5 bits (132), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 53/93 (56%), Gaps = 3/93 (3%)

Query: 8   ISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLING 67
           + L  +M+ + I  + V  +I+ID  C  G ++ AF++F  +  +G++ D+ T+ TLI G
Sbjct: 248 MELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGG 307

Query: 68  FCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           FC  G+     +LLR   D    ++ P+VV +S
Sbjct: 308 FCNAGRWDDGAKLLR---DMIKRKISPNVVTFS 337



 Score = 54.3 bits (129), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/94 (30%), Positives = 55/94 (58%), Gaps = 7/94 (7%)

Query: 9   SLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGF 68
           +L ++M++KG   + +T N LI  +C+ G+ +    +   + KR   P+V TF+ LI+ F
Sbjct: 284 NLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSF 343

Query: 69  CQMGQIRPALQLLRRAEDDELVQ--LKPDVVIYS 100
            + G++R A QLL+     E++Q  + P+ + Y+
Sbjct: 344 VKEGKLREADQLLK-----EMMQRGIAPNTITYN 372



 Score = 51.6 bits (122), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 51/96 (53%), Gaps = 3/96 (3%)

Query: 5   STVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATL 64
           S  + L  +M   G  P  +T N L++  C  G+++ A  +   + + G+QP+  T+  +
Sbjct: 175 SEALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPV 234

Query: 65  INGFCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           +N  C+ GQ   A++LLR+ E+     +K D V YS
Sbjct: 235 LNVMCKSGQTALAMELLRKMEER---NIKLDAVKYS 267



 Score = 50.4 bits (119), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 42/72 (58%)

Query: 10  LSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFC 69
           L   M  + I PN VT ++LID +   G++  A  +   + +RG  P+  T+ +LI+GFC
Sbjct: 320 LLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFC 379

Query: 70  QMGQIRPALQLL 81
           +  ++  A+Q++
Sbjct: 380 KENRLEEAIQMV 391


>AT1G62590.1 | Symbols:  | pentatricopeptide (PPR) repeat-containing
           protein | chr1:23177294-23179198 REVERSE LENGTH=634
          Length = 634

 Score = 73.9 bits (180), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 61/102 (59%), Gaps = 7/102 (6%)

Query: 1   MKHYSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFT 60
           MK +  VISL  +MQ   I+    T NILI+C+C   QI+ A ++   + K GY+P + T
Sbjct: 98  MKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVT 157

Query: 61  FATLINGFCQMGQIRPALQLLRRAEDDELVQL--KPDVVIYS 100
            ++L+NG+C   +I  A+ L+     D++V++  +PD + ++
Sbjct: 158 LSSLLNGYCHGKRISDAVALV-----DQMVEMGYRPDTITFT 194



 Score = 57.0 bits (136), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 48/98 (48%), Gaps = 3/98 (3%)

Query: 3   HYSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFA 62
            +S    L   M  K I PN VT N LID +   G+   A  ++  + KR   PD+FT+ 
Sbjct: 310 RWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYN 369

Query: 63  TLINGFCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           +L+NGFC   ++  A Q+       +     PDVV Y+
Sbjct: 370 SLVNGFCMHDRLDKAKQMFEFMVSKDCF---PDVVTYN 404



 Score = 55.5 bits (132), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 55/101 (54%), Gaps = 7/101 (6%)

Query: 2   KHYSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTF 61
           +H    ++L  +M+ KGI PN VT + LI C C  G+ + A  + + + ++   P++ TF
Sbjct: 274 RHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTF 333

Query: 62  ATLINGFCQMGQIRPALQLLRRAEDDELVQ--LKPDVVIYS 100
             LI+ F + G+   A +L      D++++  + PD+  Y+
Sbjct: 334 NALIDAFVKEGKFVEAEKLY-----DDMIKRSIDPDIFTYN 369



 Score = 53.5 bits (127), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 3/88 (3%)

Query: 13  QMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMG 72
           QM   G+ P+ +T +IL+D  C+ G++  A  VF  ++K   + D++ + T+I G C+ G
Sbjct: 460 QMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAG 519

Query: 73  QIRPALQLLRRAEDDELVQLKPDVVIYS 100
           ++     L        L  +KP+VV Y+
Sbjct: 520 KVDDGWDLFCSL---SLKGVKPNVVTYN 544



 Score = 49.7 bits (117), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 3/99 (3%)

Query: 2   KHYSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTF 61
           K  S  ++L  QM   G  P+ +T   LI       + + A ++   + +RG QP++ T+
Sbjct: 169 KRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTY 228

Query: 62  ATLINGFCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
             ++NG C+ G    AL LL +    E  +++ DVVI++
Sbjct: 229 GVVVNGLCKRGDTDLALNLLNKM---EAAKIEADVVIFN 264



 Score = 48.9 bits (115), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 3/92 (3%)

Query: 9   SLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGF 68
            L  +M  +G++ + VT   LI    H G  + A  VF  +   G  PD+ T++ L++G 
Sbjct: 421 ELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGL 480

Query: 69  CQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           C  G++  AL++    +  E   +K D+ IY+
Sbjct: 481 CNNGKLEKALEVFDYMQKSE---IKLDIYIYT 509


>AT1G64583.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:23987202-23988740 REVERSE
           LENGTH=512
          Length = 512

 Score = 71.6 bits (174), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 61/104 (58%), Gaps = 11/104 (10%)

Query: 1   MKHYSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFT 60
           ++ Y TVI  S +M+L GI  +  +  ILI C+C   +++FA SV   + K GY+P + T
Sbjct: 84  LRRYETVIYFSQKMELYGISHDLYSFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVT 143

Query: 61  FATLINGFCQMGQIRPALQLLRRAEDDELVQLK----PDVVIYS 100
           F +L++GFC + +I  A  L+       ++ +K    P+VV+Y+
Sbjct: 144 FGSLLHGFCLVNRIGDAFSLV-------ILMVKSGYEPNVVVYN 180



 Score = 60.5 bits (145), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 40/67 (59%)

Query: 14  MQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQ 73
           M  KG  PN VT N LI  +C    ++    +F  +   G+  D+FT+ TLI+G+CQ+G+
Sbjct: 307 MASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGK 366

Query: 74  IRPALQL 80
           +R AL +
Sbjct: 367 LRVALDI 373



 Score = 58.5 bits (140), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 46/92 (50%), Gaps = 3/92 (3%)

Query: 9   SLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGF 68
           SL   M   G  PN V  N LID  C  G++N A  +   + K+G   DV T+ TL+ G 
Sbjct: 162 SLVILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGL 221

Query: 69  CQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           C  G+   A ++LR   D     + PDVV ++
Sbjct: 222 CYSGRWSDAARMLR---DMMKRSINPDVVTFT 250



 Score = 49.7 bits (117), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 36/71 (50%)

Query: 8   ISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLING 67
           + L  +M  +G   +  T N LI  YC +G++  A  +F  +  R   PD+ T   L++G
Sbjct: 336 MKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITHCILLHG 395

Query: 68  FCQMGQIRPAL 78
            C  G+I  AL
Sbjct: 396 LCVNGEIESAL 406



 Score = 48.9 bits (115), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 51/96 (53%), Gaps = 7/96 (7%)

Query: 7   VISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLIN 66
            + L ++M+ KG+  + VT N L+   C+ G+ + A  +   + KR   PDV TF  LI+
Sbjct: 195 ALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRSINPDVVTFTALID 254

Query: 67  GFCQMGQIRPALQLLRRAEDDELVQ--LKPDVVIYS 100
            F + G +  A +L +     E++Q  + P+ V Y+
Sbjct: 255 VFVKQGNLDEAQELYK-----EMIQSSVDPNNVTYN 285



 Score = 46.2 bits (108), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 40/75 (53%)

Query: 9   SLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGF 68
            L  +M    + PN VT N +I+  C  G++  A   F  +  +G  P+V T+ TLI+GF
Sbjct: 267 ELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGF 326

Query: 69  CQMGQIRPALQLLRR 83
           C+   +   ++L +R
Sbjct: 327 CKFRMVDEGMKLFQR 341


>AT1G06580.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:2014440-2015942 REVERSE
           LENGTH=500
          Length = 500

 Score = 71.2 bits (173), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 34/102 (33%), Positives = 59/102 (57%), Gaps = 7/102 (6%)

Query: 1   MKHYSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFT 60
           +  Y  VISL   +++ GI  +  +   LIDC+C   +++ A S    + K G++P + T
Sbjct: 92  LNKYEAVISLFRHLEMLGISHDLYSFTTLIDCFCRCARLSLALSCLGKMMKLGFEPSIVT 151

Query: 61  FATLINGFCQMGQIRPALQLLRRAEDDELVQL--KPDVVIYS 100
           F +L+NGFC + +   A+ L+     D++V L  +P+VVIY+
Sbjct: 152 FGSLVNGFCHVNRFYEAMSLV-----DQIVGLGYEPNVVIYN 188



 Score = 54.7 bits (130), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 36/67 (53%)

Query: 17  KGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQIRP 76
           KG  PN VT N LI+ YC   +++    +   + + G   D FT+ TL  G+CQ G+   
Sbjct: 318 KGFFPNAVTYNTLINGYCKAKRVDDGMKILCVMSRDGVDGDTFTYNTLYQGYCQAGKFSA 377

Query: 77  ALQLLRR 83
           A ++L R
Sbjct: 378 AEKVLGR 384



 Score = 53.1 bits (126), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/93 (33%), Positives = 47/93 (50%), Gaps = 3/93 (3%)

Query: 8   ISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLING 67
           +SL  Q+   G  PN V  N +ID  C  GQ+N A  V   ++K G +PDV T+ +LI  
Sbjct: 169 MSLVDQIVGLGYEPNVVIYNTIIDSLCEKGQVNTALDVLKHMKKMGIRPDVVTYNSLITR 228

Query: 68  FCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
               G    + ++L    D   + + PDV+ +S
Sbjct: 229 LFHSGTWGVSARIL---SDMMRMGISPDVITFS 258



 Score = 48.9 bits (115), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 41/70 (58%)

Query: 12  HQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQM 71
           ++M  + + PN VT N LI+  C  G ++ A  V   +  +G+ P+  T+ TLING+C+ 
Sbjct: 278 NEMIQRSVNPNIVTYNSLINGLCIHGLLDEAKKVLNVLVSKGFFPNAVTYNTLINGYCKA 337

Query: 72  GQIRPALQLL 81
            ++   +++L
Sbjct: 338 KRVDDGMKIL 347



 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 52/98 (53%), Gaps = 7/98 (7%)

Query: 5   STVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATL 64
           +T + +   M+  GI P+ VT N LI    H G    +  + + + + G  PDV TF+ L
Sbjct: 201 NTALDVLKHMKKMGIRPDVVTYNSLITRLFHSGTWGVSARILSDMMRMGISPDVITFSAL 260

Query: 65  INGFCQMGQIRPALQLLRRAEDDELVQ--LKPDVVIYS 100
           I+ + + GQ+  A     + + +E++Q  + P++V Y+
Sbjct: 261 IDVYGKEGQLLEA-----KKQYNEMIQRSVNPNIVTYN 293


>AT1G31840.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:11424006-11426528 FORWARD
           LENGTH=811
          Length = 811

 Score = 70.5 bits (171), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 38/96 (39%), Positives = 54/96 (56%), Gaps = 3/96 (3%)

Query: 5   STVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATL 64
           +T   +  +M  +GI PN VT  ILI   C  G+I  AF ++  I KRG +P + T+++L
Sbjct: 373 ATASVVYKRMLCQGISPNVVTYTILIKGLCQDGRIYEAFGMYGQILKRGMEPSIVTYSSL 432

Query: 65  INGFCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           I+GFC+ G +R    L    ED   +   PDVVIY 
Sbjct: 433 IDGFCKCGNLRSGFALY---EDMIKMGYPPDVVIYG 465



 Score = 55.8 bits (133), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 49/87 (56%), Gaps = 3/87 (3%)

Query: 14  MQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQ 73
           M  KG  PN VT   L+D +     I  +F +F  ++++G  P + +++ +I+G C+ G+
Sbjct: 668 MAEKGSKPNAVTYGCLMDWFSKSVDIEGSFKLFEEMQEKGISPSIVSYSIIIDGLCKRGR 727

Query: 74  IRPALQLLRRAEDDELVQLKPDVVIYS 100
           +  A  +  +A D +L+   PDVV Y+
Sbjct: 728 VDEATNIFHQAIDAKLL---PDVVAYA 751



 Score = 55.1 bits (131), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 49/83 (59%), Gaps = 3/83 (3%)

Query: 18  GIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQIRPA 77
           G  PN VT   LI+ +C  G+++ AF +F  + +RG +PD+  ++TLI+G+ + G +   
Sbjct: 281 GPAPNVVTFCTLINGFCKRGEMDRAFDLFKVMEQRGIEPDLIAYSTLIDGYFKAGMLGMG 340

Query: 78  LQLLRRAEDDELVQLKPDVVIYS 100
            +L  +A       +K DVV++S
Sbjct: 341 HKLFSQALHK---GVKLDVVVFS 360



 Score = 53.1 bits (126), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 5/87 (5%)

Query: 10  LSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFC 69
           L  +MQ KGI P+ V+ +I+ID  C  G+++ A ++F         PDV  +A LI G+C
Sbjct: 699 LFEEMQEKGISPSIVSYSIIIDGLCKRGRVDEATNIFHQAIDAKLLPDVVAYAILIRGYC 758

Query: 70  QMGQIRPAL----QLLRRA-EDDELVQ 91
           ++G++  A      +LR   + D+L+Q
Sbjct: 759 KVGRLVEAALLYEHMLRNGVKPDDLLQ 785



 Score = 48.9 bits (115), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 39/67 (58%)

Query: 13  QMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMG 72
           Q+  +G+ P+ VT + LID +C  G +   F+++  + K GY PDV  +  L++G  + G
Sbjct: 416 QILKRGMEPSIVTYSSLIDGFCKCGNLRSGFALYEDMIKMGYPPDVVIYGVLVDGLSKQG 475

Query: 73  QIRPALQ 79
            +  A++
Sbjct: 476 LMLHAMR 482


>AT1G31840.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:11424006-11426528 FORWARD
           LENGTH=840
          Length = 840

 Score = 70.5 bits (171), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 38/96 (39%), Positives = 54/96 (56%), Gaps = 3/96 (3%)

Query: 5   STVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATL 64
           +T   +  +M  +GI PN VT  ILI   C  G+I  AF ++  I KRG +P + T+++L
Sbjct: 373 ATASVVYKRMLCQGISPNVVTYTILIKGLCQDGRIYEAFGMYGQILKRGMEPSIVTYSSL 432

Query: 65  INGFCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           I+GFC+ G +R    L    ED   +   PDVVIY 
Sbjct: 433 IDGFCKCGNLRSGFALY---EDMIKMGYPPDVVIYG 465



 Score = 55.5 bits (132), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 49/87 (56%), Gaps = 3/87 (3%)

Query: 14  MQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQ 73
           M  KG  PN VT   L+D +     I  +F +F  ++++G  P + +++ +I+G C+ G+
Sbjct: 697 MAEKGSKPNAVTYGCLMDWFSKSVDIEGSFKLFEEMQEKGISPSIVSYSIIIDGLCKRGR 756

Query: 74  IRPALQLLRRAEDDELVQLKPDVVIYS 100
           +  A  +  +A D +L+   PDVV Y+
Sbjct: 757 VDEATNIFHQAIDAKLL---PDVVAYA 780



 Score = 55.1 bits (131), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 49/83 (59%), Gaps = 3/83 (3%)

Query: 18  GIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQIRPA 77
           G  PN VT   LI+ +C  G+++ AF +F  + +RG +PD+  ++TLI+G+ + G +   
Sbjct: 281 GPAPNVVTFCTLINGFCKRGEMDRAFDLFKVMEQRGIEPDLIAYSTLIDGYFKAGMLGMG 340

Query: 78  LQLLRRAEDDELVQLKPDVVIYS 100
            +L  +A       +K DVV++S
Sbjct: 341 HKLFSQALHK---GVKLDVVVFS 360



 Score = 53.1 bits (126), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 5/87 (5%)

Query: 10  LSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFC 69
           L  +MQ KGI P+ V+ +I+ID  C  G+++ A ++F         PDV  +A LI G+C
Sbjct: 728 LFEEMQEKGISPSIVSYSIIIDGLCKRGRVDEATNIFHQAIDAKLLPDVVAYAILIRGYC 787

Query: 70  QMGQIRPAL----QLLRRA-EDDELVQ 91
           ++G++  A      +LR   + D+L+Q
Sbjct: 788 KVGRLVEAALLYEHMLRNGVKPDDLLQ 814



 Score = 48.9 bits (115), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 39/67 (58%)

Query: 13  QMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMG 72
           Q+  +G+ P+ VT + LID +C  G +   F+++  + K GY PDV  +  L++G  + G
Sbjct: 416 QILKRGMEPSIVTYSSLIDGFCKCGNLRSGFALYEDMIKMGYPPDVVIYGVLVDGLSKQG 475

Query: 73  QIRPALQ 79
            +  A++
Sbjct: 476 LMLHAMR 482


>AT1G62670.1 | Symbols: RPF2 | rna processing factor 2 |
           chr1:23204773-23206665 REVERSE LENGTH=630
          Length = 630

 Score = 70.1 bits (170), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 32/81 (39%), Positives = 49/81 (60%)

Query: 1   MKHYSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFT 60
           M  +  VISL  QMQ  GI  N  T +ILI+C+C   Q+  A +V   + K GY+P++ T
Sbjct: 94  MNKFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVT 153

Query: 61  FATLINGFCQMGQIRPALQLL 81
            ++L+NG+C   +I  A+ L+
Sbjct: 154 LSSLLNGYCHSKRISEAVALV 174



 Score = 69.3 bits (168), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 37/101 (36%), Positives = 59/101 (58%), Gaps = 7/101 (6%)

Query: 2   KHYSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTF 61
           KH    ++L  +M+ KGI PN VT + LI C C+ G+ + A  + + + +R   PDVFTF
Sbjct: 270 KHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTF 329

Query: 62  ATLINGFCQMGQIRPALQLLRRAEDDELVQ--LKPDVVIYS 100
           + LI+ F + G++  A +L      DE+V+  + P +V YS
Sbjct: 330 SALIDAFVKEGKLVEAEKLY-----DEMVKRSIDPSIVTYS 365



 Score = 56.2 bits (134), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 50/96 (52%), Gaps = 3/96 (3%)

Query: 5   STVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATL 64
           S  ++L  +M  KG  P+ VT  ++++  C  G  + AF++   + +   +P V  + T+
Sbjct: 203 SEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTI 262

Query: 65  INGFCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           I+G C+   +  AL L +  E      ++P+VV YS
Sbjct: 263 IDGLCKYKHMDDALNLFKEMETK---GIRPNVVTYS 295



 Score = 56.2 bits (134), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 3/88 (3%)

Query: 13  QMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMG 72
           +M   G+ PN +T N L+D  C  G++  A  VF  +++   +P ++T+  +I G C+ G
Sbjct: 456 EMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAG 515

Query: 73  QIRPALQLLRRAEDDELVQLKPDVVIYS 100
           ++     L        L  +KPDVV Y+
Sbjct: 516 KVEDGWDLFCNL---SLKGVKPDVVAYN 540



 Score = 53.9 bits (128), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 40/74 (54%)

Query: 14  MQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQ 73
           +Q   + P   T NI+I+  C  G++   + +F  +  +G +PDV  + T+I+GFC+ G 
Sbjct: 492 LQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGS 551

Query: 74  IRPALQLLRRAEDD 87
              A  L +  ++D
Sbjct: 552 KEEADALFKEMKED 565



 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 49/92 (53%), Gaps = 9/92 (9%)

Query: 12  HQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQM 71
            +M  +G++ N VT NILI      G  + A  +F  +   G  P++ T+ TL++G C+ 
Sbjct: 420 REMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKN 479

Query: 72  GQIRPAL---QLLRRAEDDELVQLKPDVVIYS 100
           G++  A+   + L+R+      +++P +  Y+
Sbjct: 480 GKLEKAMVVFEYLQRS------KMEPTIYTYN 505


>AT1G63070.1 | Symbols:  | pentatricopeptide (PPR) repeat-containing
           protein | chr1:23385324-23387167 REVERSE LENGTH=590
          Length = 590

 Score = 69.7 bits (169), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 35/102 (34%), Positives = 57/102 (55%), Gaps = 7/102 (6%)

Query: 1   MKHYSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFT 60
           M  +  VISL  QMQ  GI  N  T +I I+ +C   Q++ A ++   + K GY P + T
Sbjct: 88  MNKFDLVISLGEQMQNLGISHNLYTYSIFINYFCRRSQLSLALAILGKMMKLGYGPSIVT 147

Query: 61  FATLINGFCQMGQIRPALQLLRRAEDDELVQL--KPDVVIYS 100
             +L+NGFC   +I  A+ L+     D++V++  +PD V ++
Sbjct: 148 LNSLLNGFCHGNRISEAVALV-----DQMVEMGYQPDTVTFT 184



 Score = 58.2 bits (139), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/102 (33%), Positives = 55/102 (53%), Gaps = 8/102 (7%)

Query: 2   KHYSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTF 61
           KH      L ++M+ KGI P+  T N LI C C+ G+ + A  + + + ++   PD+  F
Sbjct: 264 KHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFF 323

Query: 62  ATLINGFCQMGQIRPALQLLRRAEDDELVQLK---PDVVIYS 100
             LI+ F + G++  A +L      DE+V+ K   PDVV Y+
Sbjct: 324 NALIDAFVKEGKLVEAEKLY-----DEMVKSKHCFPDVVAYN 360



 Score = 57.0 bits (136), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 3/88 (3%)

Query: 13  QMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMG 72
           QM   G+ P+ +T NIL+D  C+ G +  A  VF  ++KR  + D+ T+ T+I   C+ G
Sbjct: 416 QMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALCKAG 475

Query: 73  QIRPALQLLRRAEDDELVQLKPDVVIYS 100
           ++     L        L  +KP+VV Y+
Sbjct: 476 KVEDGWDLFCSL---SLKGVKPNVVTYT 500



 Score = 53.9 bits (128), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/95 (31%), Positives = 52/95 (54%), Gaps = 3/95 (3%)

Query: 5   STVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATL 64
           S  +++  +M   G  P+ VT N L++ +CH  +I+ A ++   + + GYQPD  TF TL
Sbjct: 127 SLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTL 186

Query: 65  INGFCQMGQIRPALQLLRRAEDDELVQLKPDVVIY 99
           ++G  Q  +   A+ L+ R     +   +PD+V Y
Sbjct: 187 VHGLFQHNKASEAVALVERM---VVKGCQPDLVTY 218



 Score = 52.4 bits (124), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 3/96 (3%)

Query: 5   STVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATL 64
           S  ++L  +M +KG  P+ VT   +I+  C  G+ + A ++   + K   + DV  + T+
Sbjct: 197 SEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTI 256

Query: 65  INGFCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           I+G C+   +  A  L  + E      +KPDV  Y+
Sbjct: 257 IDGLCKYKHMDDAFDLFNKMETK---GIKPDVFTYN 289



 Score = 50.4 bits (119), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 50/96 (52%), Gaps = 3/96 (3%)

Query: 5   STVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATL 64
           S  ++L  QM   G  P+ VT   L+       + + A ++   +  +G QPD+ T+  +
Sbjct: 162 SEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAV 221

Query: 65  INGFCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           ING C+ G+   AL LL + E     +++ DVVIY+
Sbjct: 222 INGLCKRGEPDLALNLLNKMEKG---KIEADVVIYN 254



 Score = 49.7 bits (117), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 49/93 (52%), Gaps = 3/93 (3%)

Query: 8   ISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLING 67
           ++L ++M+   I  + V  N +ID  C    ++ AF +F  +  +G +PDVFT+  LI+ 
Sbjct: 235 LNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISC 294

Query: 68  FCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
            C  G+   A +LL    +     + PD+V ++
Sbjct: 295 LCNYGRWSDASRLLSDMLEK---NINPDLVFFN 324



 Score = 48.1 bits (113), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 47/90 (52%), Gaps = 8/90 (8%)

Query: 6   TVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLI 65
           T + +   MQ + +  + VT   +I+  C  G++   + +F ++  +G +P+V T+ T++
Sbjct: 444 TALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMM 503

Query: 66  NGFCQMGQIRPALQLLRRAEDDELVQLKPD 95
           +GFC+ G        L+   D   V++K D
Sbjct: 504 SGFCRKG--------LKEEADALFVEMKED 525


>AT1G62914.1 | Symbols:  | pentatricopeptide (PPR) repeat-containing
           protein | chr1:23301576-23303162 FORWARD LENGTH=528
          Length = 528

 Score = 69.7 bits (169), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 36/102 (35%), Positives = 61/102 (59%), Gaps = 7/102 (6%)

Query: 1   MKHYSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFT 60
           M  +  VIS   +M++ GI  N  T NILI+C+C   +++ A ++   + K GY+PD+ T
Sbjct: 91  MNKFDLVISFGEKMEILGISHNLYTYNILINCFCRCSRLSLALALLGKMMKLGYEPDIVT 150

Query: 61  FATLINGFCQMGQIRPALQLLRRAEDDELVQL--KPDVVIYS 100
             +L+NGFC   +I  A+ L+     D++V++  KPD V ++
Sbjct: 151 LNSLLNGFCHGNRISDAVALV-----DQMVEMGYKPDTVTFT 187



 Score = 56.6 bits (135), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 55/101 (54%), Gaps = 9/101 (8%)

Query: 3   HYSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFA 62
            +S    L   M  + I PN VT + LID +   G++  A  ++  + KR   P++FT++
Sbjct: 303 RWSDASRLLSDMIERKINPNLVTFSALIDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYS 362

Query: 63  TLINGFCQMGQIRPALQLLRRAEDDELVQLK---PDVVIYS 100
           +LINGFC + ++  A Q+L      EL+  K   P+VV Y+
Sbjct: 363 SLINGFCMLDRLGEAKQML------ELMIRKDCLPNVVTYN 397



 Score = 55.8 bits (133), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 28/101 (27%), Positives = 58/101 (57%), Gaps = 7/101 (6%)

Query: 2   KHYSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTF 61
           +H    ++L  +M+ KG+ PN +T + LI C C+ G+ + A  + + + +R   P++ TF
Sbjct: 267 RHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMIERKINPNLVTF 326

Query: 62  ATLINGFCQMGQIRPALQLLRRAEDDELVQ--LKPDVVIYS 100
           + LI+ F + G++  A +L      +E+++  + P++  YS
Sbjct: 327 SALIDAFVKKGKLVKAEKLY-----EEMIKRSIDPNIFTYS 362



 Score = 52.8 bits (125), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 38/63 (60%)

Query: 13  QMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMG 72
           QM   G+ PN +T NIL+D  C  G++  A  VF  +++   +PD++T+  +I G C+ G
Sbjct: 453 QMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAG 512

Query: 73  QIR 75
           + +
Sbjct: 513 KWK 515



 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 3/96 (3%)

Query: 5   STVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATL 64
           S  ++L  QM   G  P+ VT   LI       + + A ++   + +RG QPD+ T+  +
Sbjct: 165 SDAVALVDQMVEMGYKPDTVTFTTLIHGLFLHNKASEAVALIDRMVQRGCQPDLVTYGAV 224

Query: 65  INGFCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           +NG C+ G    AL LL +    E  +++ +VVIYS
Sbjct: 225 VNGLCKRGDTDLALNLLNKM---EAAKIEANVVIYS 257



 Score = 50.4 bits (119), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 7/90 (7%)

Query: 13  QMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMG 72
           +M   G  P+ VT N L++ +CH  +I+ A ++   + + GY+PD  TF TLI+G     
Sbjct: 138 KMMKLGYEPDIVTLNSLLNGFCHGNRISDAVALVDQMVEMGYKPDTVTFTTLIHGLFLHN 197

Query: 73  QIRPALQLLRRAEDDELVQ--LKPDVVIYS 100
           +   A+ L+     D +VQ   +PD+V Y 
Sbjct: 198 KASEAVALI-----DRMVQRGCQPDLVTYG 222



 Score = 48.5 bits (114), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 43/81 (53%)

Query: 10  LSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFC 69
           L  +M  + I PN  T + LI+ +C L ++  A  +   + ++   P+V T+ TLINGFC
Sbjct: 345 LYEEMIKRSIDPNIFTYSSLINGFCMLDRLGEAKQMLELMIRKDCLPNVVTYNTLINGFC 404

Query: 70  QMGQIRPALQLLRRAEDDELV 90
           +  ++   ++L R      LV
Sbjct: 405 KAKRVDKGMELFREMSQRGLV 425


>AT3G16710.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:5690020-5691543 FORWARD
           LENGTH=507
          Length = 507

 Score = 68.9 bits (167), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 38/102 (37%), Positives = 56/102 (54%), Gaps = 7/102 (6%)

Query: 1   MKHYSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFT 60
           M  Y  VISL  QMQ+ GI P   T NI++ C C   Q   A      + K G++PD+ T
Sbjct: 96  MNRYDVVISLFEQMQILGIPPLLCTCNIVMHCVCLSSQPCRASCFLGKMMKLGFEPDLVT 155

Query: 61  FATLINGFCQMGQIRPALQLLRRAEDDELVQL--KPDVVIYS 100
           F +L+NG+C   +I  A+ L      D+++ +  KP+VV Y+
Sbjct: 156 FTSLLNGYCHWNRIEDAIALF-----DQILGMGFKPNVVTYT 192



 Score = 58.5 bits (140), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 47/79 (59%), Gaps = 3/79 (3%)

Query: 22  NFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQIRPALQLL 81
           N VT  I+I   C LG++  AF +F ++  +G +P+V T+ T+I+GFC+ G I  A  L 
Sbjct: 432 NIVTYTIIIQGMCKLGKVEDAFDLFCSLFSKGMKPNVITYTTMISGFCRRGLIHEADSLF 491

Query: 82  RRAEDDELVQLKPDVVIYS 100
           ++ ++D  +   P+  +Y 
Sbjct: 492 KKMKEDGFL---PNESVYK 507



 Score = 55.1 bits (131), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 3/94 (3%)

Query: 7   VISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLIN 66
            I+L  Q+   G  PN VT   LI C C    +N A  +F  +   G +P+V T+  L+ 
Sbjct: 172 AIALFDQILGMGFKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNALVT 231

Query: 67  GFCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           G C++G+   A  LLR   D    +++P+V+ ++
Sbjct: 232 GLCEIGRWGDAAWLLR---DMMKRRIEPNVITFT 262



 Score = 54.3 bits (129), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 52/101 (51%), Gaps = 7/101 (6%)

Query: 2   KHYSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTF 61
           +H +  + L +QM   G  PN VT N L+   C +G+   A  +   + KR  +P+V TF
Sbjct: 202 RHLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVITF 261

Query: 62  ATLINGFCQMGQIRPALQLLRRAEDDELVQLK--PDVVIYS 100
             LI+ F ++G++  A +L      + ++Q+   PDV  Y 
Sbjct: 262 TALIDAFVKVGKLMEAKELY-----NVMIQMSVYPDVFTYG 297



 Score = 52.4 bits (124), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 45/79 (56%), Gaps = 3/79 (3%)

Query: 12  HQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQM 71
           ++M  KG++ N +T  +LI  YC +G+ + A  VF  +  R   PD+ T+  L++G C  
Sbjct: 352 YEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLLDGLCCN 411

Query: 72  GQIRPAL---QLLRRAEDD 87
           G++  AL   + +R+ E D
Sbjct: 412 GKVEKALMIFEYMRKREMD 430



 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 3/97 (3%)

Query: 4   YSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFAT 63
           +     L   M  + I PN +T   LID +  +G++  A  ++  + +    PDVFT+ +
Sbjct: 239 WGDAAWLLRDMMKRRIEPNVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGS 298

Query: 64  LINGFCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           LING C  G +  A Q+    E +      P+ VIY+
Sbjct: 299 LINGLCMYGLLDEARQMFYLMERNGCY---PNEVIYT 332



 Score = 49.7 bits (117), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 3/89 (3%)

Query: 12  HQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQM 71
           +QM  +   P+  T N+L+D  C  G++  A  +F  +RKR    ++ T+  +I G C++
Sbjct: 387 NQMSSRRAPPDIRTYNVLLDGLCCNGKVEKALMIFEYMRKREMDINIVTYTIIIQGMCKL 446

Query: 72  GQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           G++  A  L           +KP+V+ Y+
Sbjct: 447 GKVEDAFDLFCSLFSK---GMKPNVITYT 472


>AT1G64100.2 | Symbols:  | pentatricopeptide (PPR) repeat-containing
           protein | chr1:23791585-23795563 FORWARD LENGTH=806
          Length = 806

 Score = 67.8 bits (164), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/81 (39%), Positives = 47/81 (58%)

Query: 1   MKHYSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFT 60
           M      ISL  +M+++ I  N  + NILI C+C   +++F+ S F  + K G+QPDV T
Sbjct: 119 MNRPDVAISLYRKMEIRRIPLNIYSFNILIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVT 178

Query: 61  FATLINGFCQMGQIRPALQLL 81
           F TL++G C   +I  AL L 
Sbjct: 179 FNTLLHGLCLEDRISEALALF 199



 Score = 66.2 bits (160), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 35/93 (37%), Positives = 54/93 (58%), Gaps = 3/93 (3%)

Query: 8   ISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLING 67
           ++L  QM   G+ P  +T N LI+  C  G++  A ++   +  +G   DV T+ T++NG
Sbjct: 211 VALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNG 270

Query: 68  FCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
            C+MG  + AL LL + E+     +KPDVVIYS
Sbjct: 271 MCKMGDTKSALNLLSKMEE---THIKPDVVIYS 300



 Score = 53.9 bits (128), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/100 (30%), Positives = 55/100 (55%), Gaps = 3/100 (3%)

Query: 1   MKHYSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFT 60
           M    + ++L  +M+   I P+ V  + +ID  C  G  + A  +F+ + ++G  P+VFT
Sbjct: 274 MGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFT 333

Query: 61  FATLINGFCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           +  +I+GFC  G+   A +LLR   + E   + PDV+ ++
Sbjct: 334 YNCMIDGFCSFGRWSDAQRLLRDMIERE---INPDVLTFN 370



 Score = 51.6 bits (122), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/100 (33%), Positives = 51/100 (51%), Gaps = 7/100 (7%)

Query: 3   HYSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFA 62
           H+S    L  +M  KGI PN  T N +ID +C  G+ + A  +   + +R   PDV TF 
Sbjct: 311 HHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFN 370

Query: 63  TLINGFCQMGQIRPALQLLRRAEDDELVQ--LKPDVVIYS 100
            LI+   + G++  A +L      DE++   + PD V Y+
Sbjct: 371 ALISASVKEGKLFEAEKLC-----DEMLHRCIFPDTVTYN 405



 Score = 46.6 bits (109), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 34/62 (54%)

Query: 21  PNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQIRPALQL 80
           P+ VT N +ID YC   +++    +   I +RG   +  T+ TLI+GFC++  +  A  L
Sbjct: 430 PDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDL 489

Query: 81  LR 82
            +
Sbjct: 490 FQ 491



 Score = 46.2 bits (108), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 3/93 (3%)

Query: 8   ISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLING 67
           + L  ++  +G++ N  T N LI  +C +  +N A  +F  +   G  PD  T   L+ G
Sbjct: 452 MQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYG 511

Query: 68  FCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           FC+  ++  AL+L    E  ++ ++  D V Y+
Sbjct: 512 FCENEKLEEALELF---EVIQMSKIDLDTVAYN 541


>AT1G64100.1 | Symbols:  | pentatricopeptide (PPR) repeat-containing
           protein | chr1:23791585-23793641 FORWARD LENGTH=666
          Length = 666

 Score = 67.0 bits (162), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 54/94 (57%), Gaps = 3/94 (3%)

Query: 7   VISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLIN 66
            ++L  QM   G+ P  +T N LI+  C  G++  A ++   +  +G   DV T+ T++N
Sbjct: 210 AVALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVN 269

Query: 67  GFCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           G C+MG  + AL LL + E+     +KPDVVIYS
Sbjct: 270 GMCKMGDTKSALNLLSKMEE---THIKPDVVIYS 300



 Score = 66.2 bits (160), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 32/80 (40%), Positives = 47/80 (58%)

Query: 1   MKHYSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFT 60
           M      ISL  +M+++ I  N  + NILI C+C   +++F+ S F  + K G+QPDV T
Sbjct: 119 MNRPDVAISLYRKMEIRRIPLNIYSFNILIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVT 178

Query: 61  FATLINGFCQMGQIRPALQL 80
           F TL++G C   +I  AL L
Sbjct: 179 FNTLLHGLCLEDRISEALAL 198



 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 55/100 (55%), Gaps = 3/100 (3%)

Query: 1   MKHYSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFT 60
           M    + ++L  +M+   I P+ V  + +ID  C  G  + A  +F+ + ++G  P+VFT
Sbjct: 274 MGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFT 333

Query: 61  FATLINGFCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           +  +I+GFC  G+   A +LLR   + E   + PDV+ ++
Sbjct: 334 YNCMIDGFCSFGRWSDAQRLLRDMIERE---INPDVLTFN 370



 Score = 52.4 bits (124), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 51/100 (51%), Gaps = 7/100 (7%)

Query: 3   HYSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFA 62
           H+S    L  +M  KGI PN  T N +ID +C  G+ + A  +   + +R   PDV TF 
Sbjct: 311 HHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFN 370

Query: 63  TLINGFCQMGQIRPALQLLRRAEDDELVQ--LKPDVVIYS 100
            LI+   + G++  A +L      DE++   + PD V Y+
Sbjct: 371 ALISASVKEGKLFEAEKLC-----DEMLHRCIFPDTVTYN 405



 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 34/63 (53%)

Query: 21  PNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQIRPALQL 80
           P+ VT N +ID YC   +++    +   I +RG   +  T+ TLI+GFC++  +  A  L
Sbjct: 430 PDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDL 489

Query: 81  LRR 83
            + 
Sbjct: 490 FQE 492



 Score = 46.6 bits (109), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 3/99 (3%)

Query: 2   KHYSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTF 61
           K     + L  ++  +G++ N  T N LI  +C +  +N A  +F  +   G  PD  T 
Sbjct: 446 KRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITC 505

Query: 62  ATLINGFCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
             L+ GFC+  ++  AL+L    E  ++ ++  D V Y+
Sbjct: 506 NILLYGFCENEKLEEALELF---EVIQMSKIDLDTVAYN 541


>AT1G62930.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:23306534-23308423 FORWARD
           LENGTH=629
          Length = 629

 Score = 66.6 bits (161), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 48/81 (59%)

Query: 1   MKHYSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFT 60
           M  +  VISL  +MQ   I  +  + NILI+C+C   Q+  A +V   + K GY+PD+ T
Sbjct: 93  MNKFDLVISLGERMQNLRISYDLYSYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVT 152

Query: 61  FATLINGFCQMGQIRPALQLL 81
            ++L+NG+C   +I  A+ L+
Sbjct: 153 LSSLLNGYCHGKRISEAVALV 173



 Score = 62.8 bits (151), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 36/99 (36%), Positives = 55/99 (55%), Gaps = 3/99 (3%)

Query: 2   KHYSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTF 61
           K  S  ++L  QM +    PN VT N LI       + + A ++   +  RG QPD+FT+
Sbjct: 164 KRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTY 223

Query: 62  ATLINGFCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
            T++NG C+ G I  AL LL++ E     +++ DVVIY+
Sbjct: 224 GTVVNGLCKRGDIDLALSLLKKMEKG---KIEADVVIYT 259



 Score = 61.6 bits (148), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 58/101 (57%), Gaps = 7/101 (6%)

Query: 2   KHYSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTF 61
           K+ +  ++L  +M  KGI PN VT N LI C C+ G+ + A  + + + +R   P+V TF
Sbjct: 269 KNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTF 328

Query: 62  ATLINGFCQMGQIRPALQLLRRAEDDELVQ--LKPDVVIYS 100
           + LI+ F + G++  A +L      DE+++  + PD+  YS
Sbjct: 329 SALIDAFVKEGKLVEAEKLY-----DEMIKRSIDPDIFTYS 364



 Score = 59.3 bits (142), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 49/89 (55%), Gaps = 3/89 (3%)

Query: 12  HQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQM 71
            +M   G+ P+ +T +IL+D  C  G++  A  VF  ++K   +PD++T+  +I G C+ 
Sbjct: 454 KKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKA 513

Query: 72  GQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           G++     L        L  +KP+V+IY+
Sbjct: 514 GKVEDGWDLFCSL---SLKGVKPNVIIYT 539



 Score = 53.9 bits (128), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 22/74 (29%), Positives = 42/74 (56%)

Query: 14  MQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQ 73
           +Q   + P+  T NI+I+  C  G++   + +F ++  +G +P+V  + T+I+GFC+ G 
Sbjct: 491 LQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGL 550

Query: 74  IRPALQLLRRAEDD 87
              A  L R  ++D
Sbjct: 551 KEEADALFREMKED 564



 Score = 52.8 bits (125), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 52/101 (51%), Gaps = 9/101 (8%)

Query: 3   HYSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFA 62
            +S    L   M  + I PN VT + LID +   G++  A  ++  + KR   PD+FT++
Sbjct: 305 RWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYS 364

Query: 63  TLINGFCQMGQIRPALQLLRRAEDDELVQLK---PDVVIYS 100
           +LINGFC   ++  A  +       EL+  K   P+VV Y+
Sbjct: 365 SLINGFCMHDRLDEAKHMF------ELMISKDCFPNVVTYN 399



 Score = 51.2 bits (121), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 3/99 (3%)

Query: 2   KHYSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTF 61
           K     + L  +M  +G++ N VT N LI      G  + A  +F  +   G  PD+ T+
Sbjct: 409 KRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITY 468

Query: 62  ATLINGFCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           + L++G C+ G++  AL +    +     +++PD+  Y+
Sbjct: 469 SILLDGLCKYGKLEKALVVFEYLQKS---KMEPDIYTYN 504



 Score = 46.6 bits (109), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 3/84 (3%)

Query: 17  KGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQIRP 76
           K   PN VT N LI  +C   ++     +F  + +RG   +  T+ TLI G  Q G    
Sbjct: 389 KDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDM 448

Query: 77  ALQLLRRAEDDELVQLKPDVVIYS 100
           A ++ ++   D    + PD++ YS
Sbjct: 449 AQKIFKKMVSD---GVPPDIITYS 469


>AT2G16880.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr2:7312262-7314493 REVERSE
           LENGTH=743
          Length = 743

 Score = 66.6 bits (161), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/87 (36%), Positives = 51/87 (58%), Gaps = 3/87 (3%)

Query: 14  MQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQ 73
           M+  G++PN VT N L+  YC LG +  AF +   +++    PD+ T+  LING C  G 
Sbjct: 266 MKKNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELMKQTNVLPDLCTYNILINGLCNAGS 325

Query: 74  IRPALQLLRRAEDDELVQLKPDVVIYS 100
           +R  L+L+   +    ++L+PDVV Y+
Sbjct: 326 MREGLELMDAMKS---LKLQPDVVTYN 349



 Score = 49.7 bits (117), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 41/74 (55%)

Query: 14  MQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQ 73
           M+   ++P+  T NILI+  C+ G +     +   ++    QPDV T+ TLI+G  ++G 
Sbjct: 301 MKQTNVLPDLCTYNILINGLCNAGSMREGLELMDAMKSLKLQPDVVTYNTLIDGCFELGL 360

Query: 74  IRPALQLLRRAEDD 87
              A +L+ + E+D
Sbjct: 361 SLEARKLMEQMEND 374



 Score = 46.6 bits (109), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 52/98 (53%), Gaps = 7/98 (7%)

Query: 5   STVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATL 64
           S  + +  +M  KGI  N +T N ++D  C   +++ A ++  +  KRG+  D  T+ TL
Sbjct: 433 SGALEMMREMGQKGIKMNTITLNTILDALCKERKLDEAHNLLNSAHKRGFIVDEVTYGTL 492

Query: 65  INGFCQMGQIRPALQLLRRAEDDEL--VQLKPDVVIYS 100
           I GF +  ++  AL++      DE+  V++ P V  ++
Sbjct: 493 IMGFFREEKVEKALEMW-----DEMKKVKITPTVSTFN 525


>AT4G11690.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr4:7056254-7057954 FORWARD
           LENGTH=566
          Length = 566

 Score = 64.7 bits (156), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/88 (34%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 13  QMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMG 72
           QM+  GI PN +T N LID +C +G++  A S+   ++ RG  P + T+  L++GFC+ G
Sbjct: 328 QMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKG 387

Query: 73  QIRPALQLLRRAEDDELVQLKPDVVIYS 100
               A ++++  E+     +KP  V Y+
Sbjct: 388 DTSGAAKMVKEMEER---GIKPSKVTYT 412



 Score = 55.5 bits (132), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 53/92 (57%), Gaps = 3/92 (3%)

Query: 8   ISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLING 67
           I L   M+  G++P+  T ++LI  +C  GQ+N A  +F ++ ++  +P+   + T+I G
Sbjct: 428 IQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNEVIYNTMILG 487

Query: 68  FCQMGQIRPALQLLRRAEDDELVQLKPDVVIY 99
           +C+ G    AL+LL+  E+ EL    P+V  Y
Sbjct: 488 YCKEGSSYRALKLLKEMEEKELA---PNVASY 516



 Score = 54.7 bits (130), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 3/88 (3%)

Query: 13  QMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMG 72
           +M+ +G+  N VT N LI   C   ++N A  V   ++  G  P++ T+ TLI+GFC +G
Sbjct: 293 EMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVG 352

Query: 73  QIRPALQLLRRAEDDELVQLKPDVVIYS 100
           ++  AL L R   D +   L P +V Y+
Sbjct: 353 KLGKALSLCR---DLKSRGLSPSLVTYN 377



 Score = 54.3 bits (129), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 51/91 (56%), Gaps = 3/91 (3%)

Query: 10  LSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFC 69
           +  +MQ  G+ PN  T N +++  C  G+   AF VF  +R+RG   ++ T+ TLI G C
Sbjct: 255 MYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLC 314

Query: 70  QMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           +  ++  A +++ + + D    + P+++ Y+
Sbjct: 315 REMKLNEANKVVDQMKSD---GINPNLITYN 342



 Score = 53.5 bits (127), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 3/93 (3%)

Query: 8   ISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLING 67
           +SL   ++ +G+ P+ VT NIL+  +C  G  + A  +   + +RG +P   T+  LI+ 
Sbjct: 358 LSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDT 417

Query: 68  FCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           F +   +  A+QL    E+  LV   PDV  YS
Sbjct: 418 FARSDNMEKAIQLRLSMEELGLV---PDVHTYS 447



 Score = 53.5 bits (127), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 51/96 (53%), Gaps = 3/96 (3%)

Query: 5   STVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATL 64
           S    +  +M+ +GI P+ VT  ILID +     +  A  +  ++ + G  PDV T++ L
Sbjct: 390 SGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVL 449

Query: 65  INGFCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           I+GFC  GQ+  A +L +   +      +P+ VIY+
Sbjct: 450 IHGFCIKGQMNEASRLFKSMVEK---NCEPNEVIYN 482


>AT5G39710.1 | Symbols: EMB2745 | Tetratricopeptide repeat
           (TPR)-like superfamily protein | chr5:15895729-15897972
           FORWARD LENGTH=747
          Length = 747

 Score = 64.3 bits (155), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 3/88 (3%)

Query: 13  QMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMG 72
           QM+++G+ PN  T   L+D +   G +N A+ V   +   G+ P V T+  LING C  G
Sbjct: 370 QMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTG 429

Query: 73  QIRPALQLLRRAEDDELVQLKPDVVIYS 100
           ++  A+ +L   ED +   L PDVV YS
Sbjct: 430 KMEDAIAVL---EDMKEKGLSPDVVSYS 454



 Score = 63.2 bits (152), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 30/90 (33%), Positives = 55/90 (61%), Gaps = 7/90 (7%)

Query: 13  QMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMG 72
           +M   G  P+ VT N LI+ +C  G++  A +V   ++++G  PDV +++T+++GFC+  
Sbjct: 405 EMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSY 464

Query: 73  QIRPALQLLRRAEDDELVQ--LKPDVVIYS 100
            +  AL++ R     E+V+  +KPD + YS
Sbjct: 465 DVDEALRVKR-----EMVEKGIKPDTITYS 489



 Score = 61.6 bits (148), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 45/69 (65%)

Query: 7   VISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLIN 66
            ++L  +M+ KG +PN VT N LID YC L +I+  F +  ++  +G +P++ ++  +IN
Sbjct: 224 ALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVIN 283

Query: 67  GFCQMGQIR 75
           G C+ G+++
Sbjct: 284 GLCREGRMK 292



 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 51/88 (57%), Gaps = 3/88 (3%)

Query: 13  QMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMG 72
           +M    + PN  T NILI  +C  G I+ A ++F  +  +G  P+V T+ TLI+G+C++ 
Sbjct: 195 EMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLR 254

Query: 73  QIRPALQLLRRAEDDELVQLKPDVVIYS 100
           +I    +LLR      L  L+P+++ Y+
Sbjct: 255 KIDDGFKLLRSM---ALKGLEPNLISYN 279



 Score = 58.5 bits (140), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 48/95 (50%), Gaps = 11/95 (11%)

Query: 10  LSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFC 69
           L   M LKG+ PN ++ N++I+  C  G++     V   + +RGY  D  T+ TLI G+C
Sbjct: 262 LLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYC 321

Query: 70  QMGQIRPAL----QLLRRAEDDELVQLKPDVVIYS 100
           + G    AL    ++LR         L P V+ Y+
Sbjct: 322 KEGNFHQALVMHAEMLRHG-------LTPSVITYT 349



 Score = 57.8 bits (138), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 56/112 (50%), Gaps = 20/112 (17%)

Query: 4   YSTVIS-------------LSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIR 50
           YSTV+S             +  +M  KGI P+ +T + LI  +C   +   A  ++  + 
Sbjct: 453 YSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEML 512

Query: 51  KRGYQPDVFTFATLINGFCQMGQIRPALQLLRRAEDDELVQ--LKPDVVIYS 100
           + G  PD FT+  LIN +C  G +  ALQL      +E+V+  + PDVV YS
Sbjct: 513 RVGLPPDEFTYTALINAYCMEGDLEKALQL-----HNEMVEKGVLPDVVTYS 559



 Score = 55.5 bits (132), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 44/88 (50%), Gaps = 3/88 (3%)

Query: 13  QMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMG 72
           +M   G+ P+ +T   LI   C  G +N A      +R RG  P+  T+ TL++GF Q G
Sbjct: 335 EMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKG 394

Query: 73  QIRPALQLLRRAEDDELVQLKPDVVIYS 100
            +  A ++LR   D+      P VV Y+
Sbjct: 395 YMNEAYRVLREMNDN---GFSPSVVTYN 419



 Score = 52.4 bits (124), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 4/95 (4%)

Query: 7   VISLSHQMQLKGIMPNFVTSNILIDCYCHLGQ-INFAFSVFATIRKRGYQPDVFTFATLI 65
            +S+ H  Q  G MP  ++ N ++D      + I+FA +VF  + +    P+VFT+  LI
Sbjct: 153 ALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNILI 212

Query: 66  NGFCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
            GFC  G I  AL L  + E    +   P+VV Y+
Sbjct: 213 RGFCFAGNIDVALTLFDKMETKGCL---PNVVTYN 244



 Score = 50.4 bits (119), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 50/94 (53%), Gaps = 3/94 (3%)

Query: 7   VISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLIN 66
            I++   M+ KG+ P+ V+ + ++  +C    ++ A  V   + ++G +PD  T+++LI 
Sbjct: 434 AIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQ 493

Query: 67  GFCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           GFC+  + + A  L    E+   V L PD   Y+
Sbjct: 494 GFCEQRRTKEACDLY---EEMLRVGLPPDEFTYT 524



 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 3/81 (3%)

Query: 1   MKHYSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFT 60
           MK  S V++   +M  +G   + VT N LI  YC  G  + A  + A + + G  P V T
Sbjct: 291 MKEVSFVLT---EMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVIT 347

Query: 61  FATLINGFCQMGQIRPALQLL 81
           + +LI+  C+ G +  A++ L
Sbjct: 348 YTSLIHSMCKAGNMNRAMEFL 368



 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 3/90 (3%)

Query: 10  LSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFC 69
           L  +M   G+ P+  T   LI+ YC  G +  A  +   + ++G  PDV T++ LING  
Sbjct: 507 LYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLN 566

Query: 70  QMGQIRPALQLLRRAEDDELVQLKPDVVIY 99
           +  + R A +LL +   +E V   P  V Y
Sbjct: 567 KQSRTREAKRLLLKLFYEESV---PSDVTY 593


>AT5G40400.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:16166444-16168276 FORWARD
           LENGTH=610
          Length = 610

 Score = 62.8 bits (151), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 31/98 (31%), Positives = 53/98 (54%), Gaps = 3/98 (3%)

Query: 3   HYSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFA 62
           ++  V     +M+ +G  P+ VT N L+  YC  G++  AF ++  + +R   PD+ T+ 
Sbjct: 251 NFREVDDFLEKMEEEGFEPDLVTYNTLVSSYCRRGRLKEAFYLYKIMYRRRVVPDLVTYT 310

Query: 63  TLINGFCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           +LI G C+ G++R A Q   R  D     +KPD + Y+
Sbjct: 311 SLIKGLCKDGRVREAHQTFHRMVDR---GIKPDCMSYN 345



 Score = 49.3 bits (116), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 3/83 (3%)

Query: 18  GIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQIRPA 77
           GI PN  T NIL + +C+             + + G++PD+ T+ TL++ +C+ G+++ A
Sbjct: 231 GIHPNTYTFNILTNVFCNDSNFREVDDFLEKMEEEGFEPDLVTYNTLVSSYCRRGRLKEA 290

Query: 78  LQLLRRAEDDELVQLKPDVVIYS 100
             L +      +V   PD+V Y+
Sbjct: 291 FYLYKIMYRRRVV---PDLVTYT 310


>AT4G28010.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:13930379-13932493 FORWARD
           LENGTH=704
          Length = 704

 Score = 62.8 bits (151), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 33/85 (38%), Positives = 51/85 (60%), Gaps = 5/85 (5%)

Query: 17  KGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQIRP 76
           +G  P  +T N LI  +C LGQ+  A  +F  + +RG +P+V+T+  LI+G C +G+ + 
Sbjct: 276 RGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKE 335

Query: 77  ALQLLR-RAEDDELVQLKPDVVIYS 100
           ALQLL    E DE    +P+ V Y+
Sbjct: 336 ALQLLNLMIEKDE----EPNAVTYN 356



 Score = 53.1 bits (126), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 3/99 (3%)

Query: 2   KHYSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTF 61
           +++    S   +M       NFV+ + L++CY  + +  FAF V A + KRG+  +V+  
Sbjct: 86  RNHELAFSFYRKMLETDTFINFVSLSGLLECYVQMRKTGFAFGVLALMLKRGFAFNVYNH 145

Query: 62  ATLINGFCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
             L+ G C+  +   A+ LLR    + L+   PDV  Y+
Sbjct: 146 NILLKGLCRNLECGKAVSLLREMRRNSLM---PDVFSYN 181



 Score = 50.1 bits (118), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 40/69 (57%)

Query: 13  QMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMG 72
           +M+  G+  + V    LI  +C  G+++   ++F  + +RG  P   T+ TLI GFC++G
Sbjct: 237 EMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLG 296

Query: 73  QIRPALQLL 81
           Q++ A ++ 
Sbjct: 297 QLKEASEIF 305



 Score = 49.7 bits (117), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 3/89 (3%)

Query: 10  LSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFC 69
           L  +MQ     P+ V+ NI+ID     G I  A S+   + + G  PD+FT++ LIN F 
Sbjct: 551 LFEEMQRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGMSRAGLSPDLFTYSKLINRFL 610

Query: 70  QMGQIRPALQLLRRAEDDELVQLKPDVVI 98
           ++G +  A+    +  D      +PD  I
Sbjct: 611 KLGYLDEAISFFDKMVDS---GFEPDAHI 636



 Score = 47.8 bits (112), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 39/73 (53%)

Query: 2   KHYSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTF 61
           K     + L+++M+  G   + VT  ILID +C  G+++ A      ++  G + D+  +
Sbjct: 191 KELEKALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVY 250

Query: 62  ATLINGFCQMGQI 74
            +LI GFC  G++
Sbjct: 251 TSLIRGFCDCGEL 263



 Score = 47.0 bits (110), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 1/80 (1%)

Query: 21  PNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQIRPALQL 80
           PN VT NI+I+  C  G +  A  +   ++KR  +PD  T+  L+ G C  G +  A +L
Sbjct: 350 PNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNILLGGLCAKGDLDEASKL 409

Query: 81  LRRAEDDELVQLKPDVVIYS 100
           L     D      PDV+ Y+
Sbjct: 410 LYLMLKDS-SYTDPDVISYN 428


>AT3G07290.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:2321740-2324382 REVERSE
           LENGTH=880
          Length = 880

 Score = 62.4 bits (150), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 31/82 (37%), Positives = 49/82 (59%), Gaps = 3/82 (3%)

Query: 19  IMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQIRPAL 78
           I P+ +T N LI+ YC  G++  AF +   + KR  +P+V TF  L+ G C++G+   A+
Sbjct: 367 IFPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAV 426

Query: 79  QLLRRAEDDELVQLKPDVVIYS 100
            LL+R  D+    L PD+V Y+
Sbjct: 427 HLLKRMLDN---GLSPDIVSYN 445



 Score = 58.2 bits (139), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 3/91 (3%)

Query: 10  LSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFC 69
           L  QM  KG  P+  T  +LI   C  G I+ AF++F  +  RG +P+V T+  LI+G C
Sbjct: 288 LKDQMGEKGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIPRGCKPNVHTYTVLIDGLC 347

Query: 70  QMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           + G+I  A  + R+   D +    P V+ Y+
Sbjct: 348 RDGKIEEANGVCRKMVKDRIF---PSVITYN 375



 Score = 52.8 bits (125), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 38/66 (57%)

Query: 8   ISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLING 67
           + L  +M   G+ P+ V+ N+LID  C  G +N A+ + +++     +PD  TF  +IN 
Sbjct: 426 VHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNTAYKLLSSMNCFDIEPDCLTFTAIINA 485

Query: 68  FCQMGQ 73
           FC+ G+
Sbjct: 486 FCKQGK 491



 Score = 51.2 bits (121), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/77 (37%), Positives = 41/77 (53%)

Query: 9   SLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGF 68
           +L  +M  +G  PN  T  +LID  C  G+I  A  V   + K    P V T+  LING+
Sbjct: 322 NLFDEMIPRGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDRIFPSVITYNALINGY 381

Query: 69  CQMGQIRPALQLLRRAE 85
           C+ G++ PA +LL   E
Sbjct: 382 CKDGRVVPAFELLTVME 398



 Score = 51.2 bits (121), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 3/83 (3%)

Query: 18  GIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQIRPA 77
           G++P+ VT   L+D     G I  +F +   ++  G  P+V+ +  +ING CQ G++  A
Sbjct: 576 GLVPSVVTYTTLVDGLIRSGDITGSFRILELMKLSGCLPNVYPYTIIINGLCQFGRVEEA 635

Query: 78  LQLLRRAEDDELVQLKPDVVIYS 100
            +LL   +D     + P+ V Y+
Sbjct: 636 EKLLSAMQDS---GVSPNHVTYT 655



 Score = 46.2 bits (108), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 41/79 (51%)

Query: 3   HYSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFA 62
           H +T   L   M    I P+ +T   +I+ +C  G+ + A +    + ++G   D  T  
Sbjct: 456 HMNTAYKLLSSMNCFDIEPDCLTFTAIINAFCKQGKADVASAFLGLMLRKGISLDEVTGT 515

Query: 63  TLINGFCQMGQIRPALQLL 81
           TLI+G C++G+ R AL +L
Sbjct: 516 TLIDGVCKVGKTRDALFIL 534


>AT1G52620.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:19603828-19606287 FORWARD
           LENGTH=819
          Length = 819

 Score = 62.4 bits (150), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 29/73 (39%), Positives = 43/73 (58%)

Query: 17  KGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQIRP 76
           KG +PN V  N +I  YC LG I  A+ VF  ++ +G+ P + TF T+INGFC+ G    
Sbjct: 234 KGCIPNIVFYNTIIGGYCKLGDIENAYLVFKELKLKGFMPTLETFGTMINGFCKEGDFVA 293

Query: 77  ALQLLRRAEDDEL 89
           + +LL   ++  L
Sbjct: 294 SDRLLSEVKERGL 306



 Score = 49.3 bits (116), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 48/89 (53%), Gaps = 3/89 (3%)

Query: 12  HQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQM 71
           ++M  + ++P+  T + +ID Y     +  A  +F  + K   +P+V T+ +LINGFC  
Sbjct: 544 NRMNEEHLVPDKFTYSTIIDGYVKQQDMATAIKIFRYMEKNKCKPNVVTYTSLINGFCCQ 603

Query: 72  GQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           G  + A +  +  +  +LV   P+VV Y+
Sbjct: 604 GDFKMAEETFKEMQLRDLV---PNVVTYT 629



 Score = 48.5 bits (114), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 51/94 (54%), Gaps = 6/94 (6%)

Query: 7   VISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLIN 66
           V SLS +   KG+  + V  N +I  +C  G ++ A +    + +    PD FT++T+I+
Sbjct: 507 VFSLSVE---KGVKVDVVHHNAMIKGFCRSGMLDEALACMNRMNEEHLVPDKFTYSTIID 563

Query: 67  GFCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           G+ +   +  A+++ R  E +   + KP+VV Y+
Sbjct: 564 GYVKQQDMATAIKIFRYMEKN---KCKPNVVTYT 594



 Score = 48.1 bits (113), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 3/99 (3%)

Query: 2   KHYSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTF 61
           K Y     L  QM  +G  P+ VT  ILI      G ++ A ++   +  RG  PD   +
Sbjct: 394 KEYDIASKLLLQMAERGCKPDIVTYGILIHGLVVSGHMDDAVNMKVKLIDRGVSPDAAIY 453

Query: 62  ATLINGFCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
             L++G C+ G+  PA  L     D  ++   PD  +Y+
Sbjct: 454 NMLMSGLCKTGRFLPAKLLFSEMLDRNIL---PDAYVYA 489


>AT5G64320.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:25723247-25725439 REVERSE
           LENGTH=730
          Length = 730

 Score = 62.4 bits (150), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 45/71 (63%)

Query: 12  HQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQM 71
           ++M   G+ PN V  N LI  +C   +I  A  +F  + ++G +PDV+TF +LI+G C++
Sbjct: 448 NEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEV 507

Query: 72  GQIRPALQLLR 82
            +I+ AL LLR
Sbjct: 508 DEIKHALWLLR 518



 Score = 58.9 bits (141), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 50/91 (54%), Gaps = 3/91 (3%)

Query: 10  LSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFC 69
           LS  +   GI+P+  T N LI  Y   G +  A  V   +R +G +P+V+++  L++GFC
Sbjct: 376 LSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFC 435

Query: 70  QMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           ++G+I  A  +L     D    LKP+ V ++
Sbjct: 436 KLGKIDEAYNVLNEMSAD---GLKPNTVGFN 463



 Score = 58.5 bits (140), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 3/89 (3%)

Query: 12  HQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQM 71
           H M+ KG  PN  +  IL+D +C LG+I+ A++V   +   G +P+   F  LI+ FC+ 
Sbjct: 413 HDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKE 472

Query: 72  GQIRPALQLLRRAEDDELVQLKPDVVIYS 100
            +I  A+++ R          KPDV  ++
Sbjct: 473 HRIPEAVEIFREMPRK---GCKPDVYTFN 498



 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 48/92 (52%), Gaps = 3/92 (3%)

Query: 9   SLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGF 68
           SL  +M   G  P+ ++ NILI+  C  G +  A      +  RG  PD+ TF +LING 
Sbjct: 585 SLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGL 644

Query: 69  CQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           C+ G+I   L + R+ + +    + PD V ++
Sbjct: 645 CRAGRIEDGLTMFRKLQAE---GIPPDTVTFN 673



 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 42/84 (50%)

Query: 7   VISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLIN 66
            +    +M L+G  P+ VT N LI+  C  G+I    ++F  ++  G  PD  TF TL++
Sbjct: 618 AVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMS 677

Query: 67  GFCQMGQIRPALQLLRRAEDDELV 90
             C+ G +  A  LL    +D  V
Sbjct: 678 WLCKGGFVYDACLLLDEGIEDGFV 701



 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 7/96 (7%)

Query: 5   STVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATL 64
           +  + L  +M L G +P+  T N +I   C   +IN A  +   +  RG+ PD  T+  L
Sbjct: 269 NEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYL 328

Query: 65  INGFCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           +NG C++G++  A  L  R         KP++VI++
Sbjct: 329 MNGLCKIGRVDAAKDLFYRIP-------KPEIVIFN 357


>AT2G01740.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr2:326136-327815 REVERSE
           LENGTH=559
          Length = 559

 Score = 62.0 bits (149), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 52/89 (58%), Gaps = 3/89 (3%)

Query: 12  HQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQM 71
           H M+   + PN VT   LID YC  G +  A S++  +R+     +V T+  LI+GFC+ 
Sbjct: 187 HSMKRDALSPNVVTFTCLIDGYCKAGDLEVAVSLYKEMRRVRMSLNVVTYTALIDGFCKK 246

Query: 72  GQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           G+++ A ++  R  +D   +++P+ ++Y+
Sbjct: 247 GEMQRAEEMYSRMVED---RVEPNSLVYT 272



 Score = 56.6 bits (135), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 3/85 (3%)

Query: 16  LKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQIR 75
           LK   PN VT +  ID +C  G++  A   F ++++    P+V TF  LI+G+C+ G + 
Sbjct: 156 LKCCSPNVVTYSTWIDTFCKSGELQLALKSFHSMKRDALSPNVVTFTCLIDGYCKAGDLE 215

Query: 76  PALQLLRRAEDDELVQLKPDVVIYS 100
            A+ L +       V++  +VV Y+
Sbjct: 216 VAVSLYKEMRR---VRMSLNVVTYT 237



 Score = 53.9 bits (128), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 46/84 (54%)

Query: 17  KGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQIRP 76
           +G  P+  + N ++   C LGQ+ FA  +  ++ + G +PDV ++ +LI+G C+ G IR 
Sbjct: 50  RGYTPHRSSFNSVVSFVCKLGQVKFAEDIVHSMPRFGCEPDVISYNSLIDGHCRNGDIRS 109

Query: 77  ALQLLRRAEDDELVQLKPDVVIYS 100
           A  +L           KPD+V ++
Sbjct: 110 ASLVLESLRASHGFICKPDIVSFN 133


>AT5G24830.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:8531226-8533266 FORWARD
           LENGTH=593
          Length = 593

 Score = 60.8 bits (146), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 43/74 (58%)

Query: 10  LSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFC 69
           + ++M+   I P+  T N+L+   C LG +  AF ++  + +RG QPD+ T+  L+ G C
Sbjct: 462 VKNEMRSTKIHPDTTTYNLLLGAACTLGHLRLAFQLYDEMLRRGCQPDIITYTELVRGLC 521

Query: 70  QMGQIRPALQLLRR 83
             G+++ A  LL R
Sbjct: 522 WKGRLKKAESLLSR 535



 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 51/98 (52%), Gaps = 7/98 (7%)

Query: 5   STVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATL 64
           S+ +S+ + M   G+ PN  T+N LI  Y   G++  A+ V   +R     PD  T+  L
Sbjct: 422 SSALSVLNLMLSYGVKPNVYTNNALIHGYVKGGRLIDAWWVKNEMRSTKIHPDTTTYNLL 481

Query: 65  INGFCQMGQIRPALQLLRRAEDDELVQ--LKPDVVIYS 100
           +   C +G +R A QL      DE+++   +PD++ Y+
Sbjct: 482 LGAACTLGHLRLAFQLY-----DEMLRRGCQPDIITYT 514



 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 37/74 (50%)

Query: 7   VISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLIN 66
            + +  +M  K +  + V  N++I   C  G +  A+     + KRG  PDVFT+ TLI+
Sbjct: 284 ALEVWKEMSQKNVPADSVVYNVIIRGLCSSGNMVAAYGFMCDMVKRGVNPDVFTYNTLIS 343

Query: 67  GFCQMGQIRPALQL 80
             C+ G+   A  L
Sbjct: 344 ALCKEGKFDEACDL 357


>AT5G46100.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:18694316-18695734 REVERSE
           LENGTH=472
          Length = 472

 Score = 60.5 bits (145), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/87 (37%), Positives = 50/87 (57%), Gaps = 3/87 (3%)

Query: 13  QMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMG 72
           +M+ KGI PN  T + L+D  C  G+   A  +F  +  RG +P++ T+ TLI G C+  
Sbjct: 252 EMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLITGLCKEQ 311

Query: 73  QIRPALQLLRRAEDDELVQLKPDVVIY 99
           +I+ A++LL R     L  LKPD  +Y
Sbjct: 312 KIQEAVELLDRM---NLQGLKPDAGLY 335



 Score = 52.4 bits (124), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 4/88 (4%)

Query: 14  MQLKGIMPNFVTSNILIDCYC-HLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMG 72
           M+  G+ P   + N+LI   C + G ++    +F  + KRG  PD +T+ TLI+G C+ G
Sbjct: 147 MREIGLPPTVASLNVLIKALCRNDGTVDAGLKIFLEMPKRGCDPDSYTYGTLISGLCRFG 206

Query: 73  QIRPALQLLRRAEDDELVQLKPDVVIYS 100
           +I  A +L     + +     P VV Y+
Sbjct: 207 RIDEAKKLFTEMVEKDCA---PTVVTYT 231


>AT2G02150.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr2:550340-552625 REVERSE
           LENGTH=761
          Length = 761

 Score = 60.5 bits (145), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/91 (32%), Positives = 53/91 (58%), Gaps = 3/91 (3%)

Query: 10  LSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFC 69
           L  +M+ +G++P+ VT N +ID +  +G+++     F  ++    +PDV T+  LIN FC
Sbjct: 284 LFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFC 343

Query: 70  QMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           + G++   L+  R  + +    LKP+VV YS
Sbjct: 344 KFGKLPIGLEFYREMKGN---GLKPNVVSYS 371



 Score = 55.5 bits (132), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 45/83 (54%), Gaps = 3/83 (3%)

Query: 18  GIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQIRPA 77
           G  P   T NI+IDC C  G +  A  +F  ++ RG  PD  T+ ++I+GF ++G++   
Sbjct: 257 GARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDT 316

Query: 78  LQLLRRAEDDELVQLKPDVVIYS 100
           +      +D   +  +PDV+ Y+
Sbjct: 317 VCFFEEMKD---MCCEPDVITYN 336



 Score = 53.1 bits (126), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 47/83 (56%), Gaps = 9/83 (10%)

Query: 21  PNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQIRPALQL 80
           P+ +T N LI+C+C  G++      +  ++  G +P+V +++TL++ FC+ G ++ A++ 
Sbjct: 330 PDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKF 389

Query: 81  ---LRRAEDDELVQLKPDVVIYS 100
              +RR      V L P+   Y+
Sbjct: 390 YVDMRR------VGLVPNEYTYT 406



 Score = 50.8 bits (120), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 52/90 (57%), Gaps = 7/90 (7%)

Query: 13  QMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMG 72
           +M+  G+ PN V+ + L+D +C  G +  A   +  +R+ G  P+ +T+ +LI+  C++G
Sbjct: 357 EMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIG 416

Query: 73  QIRPALQLLRRAEDDELVQ--LKPDVVIYS 100
            +  A +L      +E++Q  ++ +VV Y+
Sbjct: 417 NLSDAFRL-----GNEMLQVGVEWNVVTYT 441


>AT1G03560.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr1:890428-892410 REVERSE
           LENGTH=660
          Length = 660

 Score = 59.7 bits (143), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/97 (30%), Positives = 55/97 (56%), Gaps = 3/97 (3%)

Query: 4   YSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFAT 63
           + + ++L  +M  KGI       +++I   C  G++N  ++VF  + ++G +P+V  +  
Sbjct: 308 FGSCVALYQEMDEKGIQVPPHAFSLVIGGLCKEGKLNEGYTVFENMIRKGSKPNVAIYTV 367

Query: 64  LINGFCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           LI+G+ + G +  A++LL R  D+     KPDVV YS
Sbjct: 368 LIDGYAKSGSVEDAIRLLHRMIDE---GFKPDVVTYS 401



 Score = 50.8 bits (120), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 37/76 (48%)

Query: 14  MQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQ 73
           M  KG  PN     +LID Y   G +  A  +   +   G++PDV T++ ++NG C+ G+
Sbjct: 353 MIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGR 412

Query: 74  IRPALQLLRRAEDDEL 89
           +  AL        D L
Sbjct: 413 VEEALDYFHTCRFDGL 428



 Score = 48.1 bits (113), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 39/73 (53%)

Query: 13  QMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMG 72
           +M+  GI P   T N L++       ++ A  VF  +     +PD+ T+ T+I G+C+ G
Sbjct: 212 KMKENGIEPTLYTYNFLMNGLVSAMFVDSAERVFEVMESGRIKPDIVTYNTMIKGYCKAG 271

Query: 73  QIRPALQLLRRAE 85
           Q + A++ LR  E
Sbjct: 272 QTQKAMEKLRDME 284


>AT3G16890.1 | Symbols: PPR40 | pentatricopeptide (PPR) domain
           protein 40 | chr3:5768401-5770380 REVERSE LENGTH=659
          Length = 659

 Score = 59.7 bits (143), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 3/89 (3%)

Query: 12  HQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQM 71
            +M   GI PN +T NILI   C  G  + +  +FA +++ G  PD++ +   I  FC+M
Sbjct: 519 KEMLEWGIEPNEITYNILIRSCCSTGDTDRSVKLFAKMKENGLSPDLYAYNATIQSFCKM 578

Query: 72  GQIRPALQLLRRAEDDELVQLKPDVVIYS 100
            +++ A +LL+       + LKPD   YS
Sbjct: 579 RKVKKAEELLKTMLR---IGLKPDNFTYS 604



 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 7/90 (7%)

Query: 13  QMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMG 72
           +MQ +GI PN VT N  +  Y   G +     V   +   G++PDV TF+ +IN  C+  
Sbjct: 450 EMQDRGISPNLVTFNTFLSGYSVRGDVKKVHGVLEKLLVHGFKPDVITFSLIINCLCRAK 509

Query: 73  QIRPALQLLRRAEDDELVQ--LKPDVVIYS 100
           +I+ A    +     E+++  ++P+ + Y+
Sbjct: 510 EIKDAFDCFK-----EMLEWGIEPNEITYN 534



 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 39/70 (55%)

Query: 12  HQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQM 71
            QM+  G  P+  T NILI   C  G ++ A  +   + + G +P+VFT+  LI+GF   
Sbjct: 204 QQMRSDGCKPDRFTYNILIHGVCKKGVVDEAIRLVKQMEQEGNRPNVFTYTILIDGFLIA 263

Query: 72  GQIRPALQLL 81
           G++  AL+ L
Sbjct: 264 GRVDEALKQL 273



 Score = 48.9 bits (115), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 47/88 (53%), Gaps = 3/88 (3%)

Query: 13  QMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMG 72
           Q+   G+ P+    N +ID       ++ A+  F  +R  G +PD FT+  LI+G C+ G
Sbjct: 170 QISFLGMKPSTRLYNAVIDALVKSNSLDLAYLKFQQMRSDGCKPDRFTYNILIHGVCKKG 229

Query: 73  QIRPALQLLRRAEDDELVQLKPDVVIYS 100
            +  A++L+++ E +     +P+V  Y+
Sbjct: 230 VVDEAIRLVKQMEQE---GNRPNVFTYT 254



 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 5/90 (5%)

Query: 12  HQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQM 71
            QM + G++ +  + N +IDC C   +I  A      ++ RG  P++ TF T ++G+   
Sbjct: 414 KQMGVDGLLSSVYSYNAVIDCLCKARRIENAAMFLTEMQDRGISPNLVTFNTFLSGYSVR 473

Query: 72  GQIRPALQLLRRAEDDELVQ-LKPDVVIYS 100
           G ++    +L +     LV   KPDV+ +S
Sbjct: 474 GDVKKVHGVLEKL----LVHGFKPDVITFS 499


>AT1G19290.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:6666249-6668963 FORWARD
           LENGTH=904
          Length = 904

 Score = 59.7 bits (143), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 29/83 (34%), Positives = 48/83 (57%)

Query: 9   SLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGF 68
           +L  +M LKGI+PN VT N LI   C LG ++ A  +   + ++G  P+  T+ TLI+G 
Sbjct: 776 TLRDEMALKGIIPNIVTYNALIKGLCKLGNVDRAQRLLHKLPQKGITPNAITYNTLIDGL 835

Query: 69  CQMGQIRPALQLLRRAEDDELVQ 91
            + G +  A++L  +  +  LV+
Sbjct: 836 VKSGNVAEAMRLKEKMIEKGLVR 858



 Score = 50.4 bits (119), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 3/83 (3%)

Query: 18  GIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQIRPA 77
           G+  N    N LI+ YC  GQ+  A  +F+ +     +PD  T+ TL++G+C+ G +  A
Sbjct: 361 GVRTNTTICNSLINGYCKSGQLVEAEQIFSRMNDWSLKPDHHTYNTLVDGYCRAGYVDEA 420

Query: 78  LQLLRRAEDDELVQLKPDVVIYS 100
           L+L  +    E+V   P V+ Y+
Sbjct: 421 LKLCDQMCQKEVV---PTVMTYN 440


>AT5G18475.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:6129255-6130775 REVERSE
           LENGTH=506
          Length = 506

 Score = 59.7 bits (143), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 30/86 (34%), Positives = 53/86 (61%), Gaps = 7/86 (8%)

Query: 17  KGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQIRP 76
           +GI P+ VT N++I+ +C  G++  A  +   ++K G  P+V+ ++ L+NGFC++G+I+ 
Sbjct: 262 EGISPDPVTFNVMINGFCRAGEVERAKKILDFMKKNGCNPNVYNYSALMNGFCKVGKIQE 321

Query: 77  ALQLLRRAEDDELVQ--LKPDVVIYS 100
           A Q       DE+ +  LK D V Y+
Sbjct: 322 AKQTF-----DEVKKTGLKLDTVGYT 342



 Score = 48.1 bits (113), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 38/68 (55%)

Query: 14  MQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQ 73
           M+  G  PN    + L++ +C +G+I  A   F  ++K G + D   + TL+N FC+ G+
Sbjct: 294 MKKNGCNPNVYNYSALMNGFCKVGKIQEAKQTFDEVKKTGLKLDTVGYTTLMNCFCRNGE 353

Query: 74  IRPALQLL 81
              A++LL
Sbjct: 354 TDEAMKLL 361



 Score = 47.0 bits (110), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 2/71 (2%)

Query: 13  QMQLKGI-MPNFVTSNILIDCYCHLGQINFAFSVFA-TIRKRGYQPDVFTFATLINGFCQ 70
           +M+  GI  PN +T + L+DC     +   A  +F   I K G  PD  TF  +INGFC+
Sbjct: 221 EMKRSGISYPNSITYSTLMDCLFAHSRSKEAVELFEDMISKEGISPDPVTFNVMINGFCR 280

Query: 71  MGQIRPALQLL 81
            G++  A ++L
Sbjct: 281 AGEVERAKKIL 291


>AT1G05670.2 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr1:1698574-1700799 REVERSE
           LENGTH=741
          Length = 741

 Score = 59.7 bits (143), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 3/98 (3%)

Query: 3   HYSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFA 62
           H      + + M   G  PN VT   LID  C  G ++ A  +   + K G QP++FT+ 
Sbjct: 436 HMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYN 495

Query: 63  TLINGFCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           +++NG C+ G I  A++L+      E   L  D V Y+
Sbjct: 496 SIVNGLCKSGNIEEAVKLVGEF---EAAGLNADTVTYT 530



 Score = 58.9 bits (141), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 50/91 (54%), Gaps = 3/91 (3%)

Query: 10  LSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFC 69
           L H+M  KG+ P+ VT   LI+ YC  G +  AF V   + + G  P+V T+ TLI+G C
Sbjct: 408 LFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLC 467

Query: 70  QMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           + G +  A +LL        + L+P++  Y+
Sbjct: 468 KEGDLDSANELLHEMWK---IGLQPNIFTYN 495



 Score = 55.8 bits (133), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 3/88 (3%)

Query: 13  QMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMG 72
           +M  +GI+P+ V    LID +C  G I  A   F  +  R   PDV T+  +I+GFCQ+G
Sbjct: 341 EMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIG 400

Query: 73  QIRPALQLLRRAEDDELVQLKPDVVIYS 100
            +  A +L           L+PD V ++
Sbjct: 401 DMVEAGKLFHEM---FCKGLEPDSVTFT 425



 Score = 55.5 bits (132), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 3/96 (3%)

Query: 5   STVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATL 64
           +T I +  +    G+  N  + NI+I   C LG+I  A  +   +  +GY PDV +++T+
Sbjct: 228 ATAIIVFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTV 287

Query: 65  INGFCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           +NG+C+ G++    +L+   E  +   LKP+  IY 
Sbjct: 288 VNGYCRFGELDKVWKLI---EVMKRKGLKPNSYIYG 320



 Score = 52.8 bits (125), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 3/94 (3%)

Query: 7   VISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLIN 66
           V  L   M+ KG+ PN      +I   C + ++  A   F+ + ++G  PD   + TLI+
Sbjct: 300 VWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLID 359

Query: 67  GFCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           GFC+ G IR A +        ++    PDV+ Y+
Sbjct: 360 GFCKRGDIRAASKFFYEMHSRDIT---PDVLTYT 390



 Score = 52.8 bits (125), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 50/91 (54%), Gaps = 7/91 (7%)

Query: 12  HQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQM 71
           ++M  + I P+ +T   +I  +C +G +  A  +F  +  +G +PD  TF  LING+C+ 
Sbjct: 375 YEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKA 434

Query: 72  GQIRPALQLLRRAEDDELVQL--KPDVVIYS 100
           G ++ A ++      + ++Q    P+VV Y+
Sbjct: 435 GHMKDAFRV-----HNHMIQAGCSPNVVTYT 460



 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 39/75 (52%)

Query: 7   VISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLIN 66
            + L  + +  G+  + VT   L+D YC  G+++ A  +   +  +G QP + TF  L+N
Sbjct: 510 AVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMN 569

Query: 67  GFCQMGQIRPALQLL 81
           GFC  G +    +LL
Sbjct: 570 GFCLHGMLEDGEKLL 584



 Score = 49.3 bits (116), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 37/75 (49%)

Query: 9   SLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGF 68
            L H+M   G+ PN  T N +++  C  G I  A  +       G   D  T+ TL++ +
Sbjct: 477 ELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAY 536

Query: 69  CQMGQIRPALQLLRR 83
           C+ G++  A ++L+ 
Sbjct: 537 CKSGEMDKAQEILKE 551


>AT1G05670.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr1:1698574-1700799 REVERSE
           LENGTH=741
          Length = 741

 Score = 59.7 bits (143), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 3/98 (3%)

Query: 3   HYSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFA 62
           H      + + M   G  PN VT   LID  C  G ++ A  +   + K G QP++FT+ 
Sbjct: 436 HMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYN 495

Query: 63  TLINGFCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           +++NG C+ G I  A++L+      E   L  D V Y+
Sbjct: 496 SIVNGLCKSGNIEEAVKLVGEF---EAAGLNADTVTYT 530



 Score = 58.9 bits (141), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 50/91 (54%), Gaps = 3/91 (3%)

Query: 10  LSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFC 69
           L H+M  KG+ P+ VT   LI+ YC  G +  AF V   + + G  P+V T+ TLI+G C
Sbjct: 408 LFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLC 467

Query: 70  QMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           + G +  A +LL        + L+P++  Y+
Sbjct: 468 KEGDLDSANELLHEMWK---IGLQPNIFTYN 495



 Score = 55.8 bits (133), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 45/88 (51%), Gaps = 3/88 (3%)

Query: 13  QMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMG 72
           +M  +GI+P+ V    LID +C  G I  A   F  +  R   PDV T+  +I+GFCQ+G
Sbjct: 341 EMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIG 400

Query: 73  QIRPALQLLRRAEDDELVQLKPDVVIYS 100
            +  A +L           L+PD V ++
Sbjct: 401 DMVEAGKLFHEM---FCKGLEPDSVTFT 425



 Score = 55.5 bits (132), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 52/96 (54%), Gaps = 3/96 (3%)

Query: 5   STVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATL 64
           +T I +  +    G+  N  + NI+I   C LG+I  A  +   +  +GY PDV +++T+
Sbjct: 228 ATAIIVFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTV 287

Query: 65  INGFCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           +NG+C+ G++    +L+   E  +   LKP+  IY 
Sbjct: 288 VNGYCRFGELDKVWKLI---EVMKRKGLKPNSYIYG 320



 Score = 52.8 bits (125), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 3/94 (3%)

Query: 7   VISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLIN 66
           V  L   M+ KG+ PN      +I   C + ++  A   F+ + ++G  PD   + TLI+
Sbjct: 300 VWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLID 359

Query: 67  GFCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           GFC+ G IR A +        ++    PDV+ Y+
Sbjct: 360 GFCKRGDIRAASKFFYEMHSRDIT---PDVLTYT 390



 Score = 52.8 bits (125), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 50/91 (54%), Gaps = 7/91 (7%)

Query: 12  HQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQM 71
           ++M  + I P+ +T   +I  +C +G +  A  +F  +  +G +PD  TF  LING+C+ 
Sbjct: 375 YEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKA 434

Query: 72  GQIRPALQLLRRAEDDELVQL--KPDVVIYS 100
           G ++ A ++      + ++Q    P+VV Y+
Sbjct: 435 GHMKDAFRV-----HNHMIQAGCSPNVVTYT 460



 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 39/75 (52%)

Query: 7   VISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLIN 66
            + L  + +  G+  + VT   L+D YC  G+++ A  +   +  +G QP + TF  L+N
Sbjct: 510 AVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMN 569

Query: 67  GFCQMGQIRPALQLL 81
           GFC  G +    +LL
Sbjct: 570 GFCLHGMLEDGEKLL 584



 Score = 49.3 bits (116), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 37/75 (49%)

Query: 9   SLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGF 68
            L H+M   G+ PN  T N +++  C  G I  A  +       G   D  T+ TL++ +
Sbjct: 477 ELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAY 536

Query: 69  CQMGQIRPALQLLRR 83
           C+ G++  A ++L+ 
Sbjct: 537 CKSGEMDKAQEILKE 551


>AT1G13630.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:4669784-4672826 REVERSE
           LENGTH=806
          Length = 806

 Score = 59.7 bits (143), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 48/86 (55%), Gaps = 3/86 (3%)

Query: 15  QLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQI 74
           + K I P+ V+ N ++  YC LG ++ A S F T+ K G  P V++   LING C +G I
Sbjct: 214 EWKDIGPSVVSFNSIMSGYCKLGFVDMAKSFFCTVLKCGLVPSVYSHNILINGLCLVGSI 273

Query: 75  RPALQLLRRAEDDELVQLKPDVVIYS 100
             AL+L   A D     ++PD V Y+
Sbjct: 274 AEALEL---ASDMNKHGVEPDSVTYN 296



 Score = 54.7 bits (130), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 3/83 (3%)

Query: 18  GIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQIRPA 77
           G++P+  + NILI+  C +G I  A  + + + K G +PD  T+  L  GF  +G I  A
Sbjct: 252 GLVPSVYSHNILINGLCLVGSIAEALELASDMNKHGVEPDSVTYNILAKGFHLLGMISGA 311

Query: 78  LQLLRRAEDDELVQLKPDVVIYS 100
            +++R   D     L PDV+ Y+
Sbjct: 312 WEVIRDMLDK---GLSPDVITYT 331



 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 42/78 (53%)

Query: 5   STVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATL 64
           +  + L+  M   G+ P+ VT NIL   +  LG I+ A+ V   +  +G  PDV T+  L
Sbjct: 274 AEALELASDMNKHGVEPDSVTYNILAKGFHLLGMISGAWEVIRDMLDKGLSPDVITYTIL 333

Query: 65  INGFCQMGQIRPALQLLR 82
           + G CQ+G I   L LL+
Sbjct: 334 LCGQCQLGNIDMGLVLLK 351



 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 4/85 (4%)

Query: 17  KGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPD-VFTFATLINGFCQMGQIR 75
           KG+ P+ +T  IL+   C LG I+    +   +  RG++ + +   + +++G C+ G+I 
Sbjct: 321 KGLSPDVITYTILLCGQCQLGNIDMGLVLLKDMLSRGFELNSIIPCSVMLSGLCKTGRID 380

Query: 76  PALQLLRRAEDDELVQLKPDVVIYS 100
            AL L  + + D    L PD+V YS
Sbjct: 381 EALSLFNQMKAD---GLSPDLVAYS 402


>AT1G13630.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:4670178-4672826 REVERSE
           LENGTH=798
          Length = 798

 Score = 59.7 bits (143), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 48/86 (55%), Gaps = 3/86 (3%)

Query: 15  QLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQI 74
           + K I P+ V+ N ++  YC LG ++ A S F T+ K G  P V++   LING C +G I
Sbjct: 214 EWKDIGPSVVSFNSIMSGYCKLGFVDMAKSFFCTVLKCGLVPSVYSHNILINGLCLVGSI 273

Query: 75  RPALQLLRRAEDDELVQLKPDVVIYS 100
             AL+L   A D     ++PD V Y+
Sbjct: 274 AEALEL---ASDMNKHGVEPDSVTYN 296



 Score = 54.7 bits (130), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 3/83 (3%)

Query: 18  GIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQIRPA 77
           G++P+  + NILI+  C +G I  A  + + + K G +PD  T+  L  GF  +G I  A
Sbjct: 252 GLVPSVYSHNILINGLCLVGSIAEALELASDMNKHGVEPDSVTYNILAKGFHLLGMISGA 311

Query: 78  LQLLRRAEDDELVQLKPDVVIYS 100
            +++R   D     L PDV+ Y+
Sbjct: 312 WEVIRDMLDK---GLSPDVITYT 331



 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/78 (35%), Positives = 42/78 (53%)

Query: 5   STVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATL 64
           +  + L+  M   G+ P+ VT NIL   +  LG I+ A+ V   +  +G  PDV T+  L
Sbjct: 274 AEALELASDMNKHGVEPDSVTYNILAKGFHLLGMISGAWEVIRDMLDKGLSPDVITYTIL 333

Query: 65  INGFCQMGQIRPALQLLR 82
           + G CQ+G I   L LL+
Sbjct: 334 LCGQCQLGNIDMGLVLLK 351



 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 4/85 (4%)

Query: 17  KGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPD-VFTFATLINGFCQMGQIR 75
           KG+ P+ +T  IL+   C LG I+    +   +  RG++ + +   + +++G C+ G+I 
Sbjct: 321 KGLSPDVITYTILLCGQCQLGNIDMGLVLLKDMLSRGFELNSIIPCSVMLSGLCKTGRID 380

Query: 76  PALQLLRRAEDDELVQLKPDVVIYS 100
            AL L  + + D    L PD+V YS
Sbjct: 381 EALSLFNQMKAD---GLSPDLVAYS 402


>AT1G74580.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:28020777-28023068 FORWARD
           LENGTH=763
          Length = 763

 Score = 59.3 bits (142), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 43/83 (51%)

Query: 4   YSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFAT 63
           +  V+     M  KG  PN  T NIL++  C   +++ A  +   ++ +   PD  TF T
Sbjct: 512 FEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGT 571

Query: 64  LINGFCQMGQIRPALQLLRRAED 86
           LI+GFC+ G +  A  L R+ E+
Sbjct: 572 LIDGFCKNGDLDGAYTLFRKMEE 594



 Score = 57.4 bits (137), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/91 (32%), Positives = 53/91 (58%), Gaps = 3/91 (3%)

Query: 10  LSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFC 69
           L+++M  KG++P   T NIL++  C +G ++ A  +   +  +GY PD+FTF  LI+G+ 
Sbjct: 413 LANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYS 472

Query: 70  QMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
              ++  AL++L    D+    + PDV  Y+
Sbjct: 473 TQLKMENALEILDVMLDN---GVDPDVYTYN 500



 Score = 53.5 bits (127), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/88 (32%), Positives = 45/88 (51%), Gaps = 3/88 (3%)

Query: 13  QMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMG 72
           +M  +G+ P+  T N LI  YC  G +  A  +       G+ PD FT+ +LI+G C  G
Sbjct: 311 KMVNEGLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEG 370

Query: 73  QIRPALQLLRRAEDDELVQLKPDVVIYS 100
           +   AL L   A       +KP+V++Y+
Sbjct: 371 ETNRALALFNEALGK---GIKPNVILYN 395



 Score = 48.5 bits (114), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 3/85 (3%)

Query: 16  LKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQIR 75
             G +P+  T   LID  CH G+ N A ++F     +G +P+V  + TLI G    G I 
Sbjct: 349 FNGFVPDQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGMIL 408

Query: 76  PALQLLRRAEDDELVQLKPDVVIYS 100
            A QL     +  L+   P+V  ++
Sbjct: 409 EAAQLANEMSEKGLI---PEVQTFN 430



 Score = 48.5 bits (114), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 45/84 (53%), Gaps = 3/84 (3%)

Query: 17  KGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQIRP 76
           +G++PN  T N+ I   C  G+++ A  +   + ++G +PDV T+  LI G C+  + + 
Sbjct: 245 RGVLPNLFTYNLFIQGLCQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQE 304

Query: 77  ALQLLRRAEDDELVQLKPDVVIYS 100
           A   L +  ++    L+PD   Y+
Sbjct: 305 AEVYLGKMVNE---GLEPDSYTYN 325


>AT3G48810.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:18097048-18099027 FORWARD
           LENGTH=659
          Length = 659

 Score = 59.3 bits (142), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 54/100 (54%), Gaps = 8/100 (8%)

Query: 4   YSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFAT 63
           Y     L  +M  KGI PN ++ + LI+  C+ GQI  AFS    + KRG  P+++T ++
Sbjct: 262 YKGAFELMREMVEKGISPNVISYSTLINVLCNSGQIELAFSFLTQMLKRGCHPNIYTLSS 321

Query: 64  LINGFCQMGQIRPALQLLRRAEDDELVQ---LKPDVVIYS 100
           L+ G    G    AL L      +++++   L+P+VV Y+
Sbjct: 322 LVKGCFLRGTTFDALDLW-----NQMIRGFGLQPNVVAYN 356



 Score = 53.1 bits (126), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 3/83 (3%)

Query: 18  GIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQIRPA 77
           G+ PN V  N L+  +C  G I  A SVF+ + + G  P++ T+ +LINGF + G +  A
Sbjct: 347 GLQPNVVAYNTLVQGFCSHGNIVKAVSVFSHMEEIGCSPNIRTYGSLINGFAKRGSLDGA 406

Query: 78  LQLLRRAEDDELVQLKPDVVIYS 100
           + +  +          P+VV+Y+
Sbjct: 407 VYIWNKMLTSGCC---PNVVVYT 426


>AT1G02060.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:360918-363050 REVERSE
           LENGTH=710
          Length = 710

 Score = 59.3 bits (142), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 50/98 (51%), Gaps = 4/98 (4%)

Query: 4   YSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKR-GYQPDVFTFA 62
           +   + L   M+  GI P+ +T N L+      G+   A  +F  +R+  G  PD +TF 
Sbjct: 154 FQESVKLFQTMKQMGISPSVLTFNSLLSILLKRGRTGMAHDLFDEMRRTYGVTPDSYTFN 213

Query: 63  TLINGFCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           TLINGFC+   +  A ++ +   D EL    PDVV Y+
Sbjct: 214 TLINGFCKNSMVDEAFRIFK---DMELYHCNPDVVTYN 248



 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 9/87 (10%)

Query: 18  GIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQIRPA 77
           G+ P+  T N LI+ +C    ++ AF +F  +      PDV T+ T+I+G C+ G+++ A
Sbjct: 204 GVTPDSYTFNTLINGFCKNSMVDEAFRIFKDMELYHCNPDVVTYNTIIDGLCRAGKVKIA 263

Query: 78  LQ----LLRRAEDDELVQLKPDVVIYS 100
                 +L++A D     + P+VV Y+
Sbjct: 264 HNVLSGMLKKATD-----VHPNVVSYT 285



 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 13/93 (13%)

Query: 14  MQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRG--YQPDVFTFATLINGFCQM 71
           M+L    P+ VT N +ID  C  G++  A +V + + K+     P+V ++ TL+ G+C  
Sbjct: 235 MELYHCNPDVVTYNTIIDGLCRAGKVKIAHNVLSGMLKKATDVHPNVVSYTTLVRGYCMK 294

Query: 72  GQIRPAL----QLLRRAEDDELVQLKPDVVIYS 100
            +I  A+     +L R        LKP+ V Y+
Sbjct: 295 QEIDEAVLVFHDMLSRG-------LKPNAVTYN 320


>AT1G09680.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:3134107-3135930 REVERSE
           LENGTH=607
          Length = 607

 Score = 58.9 bits (141), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 44/79 (55%), Gaps = 3/79 (3%)

Query: 22  NFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQIRPALQLL 81
           N    NIL++ +C  G I+ A  VF  I KR  QP V +F TLING+C++G +    +L 
Sbjct: 239 NVYVFNILMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYCKVGNLDEGFRLK 298

Query: 82  RRAEDDELVQLKPDVVIYS 100
            + E     + +PDV  YS
Sbjct: 299 HQMEKS---RTRPDVFTYS 314



 Score = 57.8 bits (138), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 48/81 (59%), Gaps = 1/81 (1%)

Query: 12  HQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQM 71
            +M  KG+ P+ V  N L++ +C  G +  A ++   + +RG +PD  T+ TLI+GFC+ 
Sbjct: 369 QKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGFCRG 428

Query: 72  GQIRPALQLLRRAEDDELVQL 92
           G +  AL+ +R+  D   ++L
Sbjct: 429 GDVETALE-IRKEMDQNGIEL 448



 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 7/91 (7%)

Query: 12  HQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQM 71
            +M   GI P+ VT  +++D +C  G     F +   ++  G+ P V T+  L+NG C++
Sbjct: 474 REMLRAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNGLCKL 533

Query: 72  GQIRPALQLLRRAEDDELVQLK--PDVVIYS 100
           GQ++ A  LL     D ++ +   PD + Y+
Sbjct: 534 GQMKNADMLL-----DAMLNIGVVPDDITYN 559



 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 50/94 (53%), Gaps = 7/94 (7%)

Query: 9   SLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGF 68
            L  +M  +G++PN V    LI  +   G+I+     +  +  +G QPD+  + TL+NGF
Sbjct: 331 GLFDEMCKRGLIPNDVIFTTLIHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTLVNGF 390

Query: 69  CQMGQIRPALQLLRRAEDDELVQ--LKPDVVIYS 100
           C+ G +  A  ++     D +++  L+PD + Y+
Sbjct: 391 CKNGDLVAARNIV-----DGMIRRGLRPDKITYT 419



 Score = 49.7 bits (117), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 49/90 (54%), Gaps = 7/90 (7%)

Query: 13  QMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMG 72
           ++  + + P  V+ N LI+ YC +G ++  F +   + K   +PDVFT++ LIN  C+  
Sbjct: 265 EITKRSLQPTVVSFNTLINGYCKVGNLDEGFRLKHQMEKSRTRPDVFTYSALINALCKEN 324

Query: 73  QIRPALQLLRRAEDDELVQ--LKPDVVIYS 100
           ++  A  L      DE+ +  L P+ VI++
Sbjct: 325 KMDGAHGLF-----DEMCKRGLIPNDVIFT 349



 Score = 49.3 bits (116), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 5/92 (5%)

Query: 10  LSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFC 69
           L HQM+     P+  T + LI+  C   +++ A  +F  + KRG  P+   F TLI+G  
Sbjct: 297 LKHQMEKSRTRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHGHS 356

Query: 70  QMGQIRPALQLLRRAEDDELVQ-LKPDVVIYS 100
           + G+I     L++ +    L + L+PD+V+Y+
Sbjct: 357 RNGEI----DLMKESYQKMLSKGLQPDIVLYN 384


>AT5G61990.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:24900186-24903110 REVERSE
           LENGTH=974
          Length = 974

 Score = 58.2 bits (139), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 42/72 (58%)

Query: 10  LSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFC 69
           L  +M +KG+ PN VT   +ID YC  G +  AF +F  ++ +G  PD F + TL++G C
Sbjct: 684 LLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCC 743

Query: 70  QMGQIRPALQLL 81
           ++  +  A+ + 
Sbjct: 744 RLNDVERAITIF 755



 Score = 55.1 bits (131), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 51/92 (55%), Gaps = 3/92 (3%)

Query: 9   SLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGF 68
           S+  +M  +G+ PN +  N+L+  +C  G+I  A  +   +  +G  P+  T+ T+I+G+
Sbjct: 648 SIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGY 707

Query: 69  CQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           C+ G +  A +L    ++ +L  L PD  +Y+
Sbjct: 708 CKSGDLAEAFRLF---DEMKLKGLVPDSFVYT 736



 Score = 54.7 bits (130), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/87 (32%), Positives = 49/87 (56%), Gaps = 3/87 (3%)

Query: 13  QMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMG 72
           +M+ KGI P+  +  +LI+ +  LG +  A S+F  + + G  P+V  +  L+ GFC+ G
Sbjct: 617 EMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSG 676

Query: 73  QIRPALQLLRRAEDDELVQLKPDVVIY 99
           +I  A +LL   ++  +  L P+ V Y
Sbjct: 677 EIEKAKELL---DEMSVKGLHPNAVTY 700



 Score = 52.0 bits (123), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 27/86 (31%), Positives = 51/86 (59%), Gaps = 7/86 (8%)

Query: 17  KGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQIRP 76
           +GI+ +  T  +L++      +++ A  +F  +R +G  PDVF++  LINGF ++G ++ 
Sbjct: 586 QGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQK 645

Query: 77  ALQLLRRAEDDELVQ--LKPDVVIYS 100
           A  +      DE+V+  L P+V+IY+
Sbjct: 646 ASSIF-----DEMVEEGLTPNVIIYN 666



 Score = 48.5 bits (114), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 15/86 (17%)

Query: 21  PNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQIRPALQL 80
           PN VT NI+ID  C  G +  A  +F  ++     P V T+ +L+NG+ +MG        
Sbjct: 803 PNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMG-------- 854

Query: 81  LRRAED----DELVQ--LKPDVVIYS 100
            RRAE     DE +   ++PD ++YS
Sbjct: 855 -RRAEMFPVFDEAIAAGIEPDHIMYS 879


>AT4G01400.1 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           cellular_component unknown; EXPRESSED IN: 24 plant
           structures; EXPRESSED DURING: 15 growth stages; CONTAINS
           InterPro DOMAIN/s: COG4 transport (InterPro:IPR013167),
           Pentatricopeptide repeat (InterPro:IPR002885); BEST
           Arabidopsis thaliana protein match is: Pentatricopeptide
           repeat (PPR) superfamily protein (TAIR:AT5G46100.1); Has
           26268 Blast hits to 8959 proteins in 289 species: Archae
           - 0; Bacteria - 3; Metazoa - 247; Fungi - 222; Plants -
           25350; Viruses - 0; Other Eukaryotes - 446 (source: NCBI
           BLink). | chr4:573098-577243 REVERSE LENGTH=1110
          Length = 1110

 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 42/67 (62%)

Query: 15  QLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQI 74
           +L G+MPN  + N+L+  +C    ++ A+ +F  + +R   PDV ++  LI GFC+ GQ+
Sbjct: 182 RLHGVMPNTRSYNLLMQAFCLNDDLSIAYQLFGKMLERDVVPDVDSYKILIQGFCRKGQV 241

Query: 75  RPALQLL 81
             A++LL
Sbjct: 242 NGAMELL 248


>AT5G01110.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:42114-44303 REVERSE
           LENGTH=729
          Length = 729

 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/103 (33%), Positives = 51/103 (49%), Gaps = 14/103 (13%)

Query: 1   MKHYSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFT 60
           M+   T +S   Q+Q KG+ P+ VT N LI  Y   G +  AF +   +  +G+ P V+T
Sbjct: 251 MEKVGTFLS---QVQEKGVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYT 307

Query: 61  FATLINGFCQMGQIRPA----LQLLRRAEDDELVQLKPDVVIY 99
           + T+ING C+ G+   A     ++LR         L PD   Y
Sbjct: 308 YNTVINGLCKHGKYERAKEVFAEMLRSG-------LSPDSTTY 343



 Score = 50.4 bits (119), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 3/91 (3%)

Query: 10  LSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFC 69
           L ++M  + + P+  T  ILID +C LG +  A  +F  ++++  + DV T+ TL++GF 
Sbjct: 467 LFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFG 526

Query: 70  QMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           ++G I  A ++       E++   P  + YS
Sbjct: 527 KVGDIDTAKEIWADMVSKEIL---PTPISYS 554



 Score = 49.7 bits (117), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 25/96 (26%), Positives = 53/96 (55%), Gaps = 3/96 (3%)

Query: 5   STVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATL 64
           S  ++L ++M  +G   + VT N ++   C    +  A  +F  + +R   PD +T   L
Sbjct: 427 SVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTIL 486

Query: 65  INGFCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           I+G C++G ++ A++L ++ ++    +++ DVV Y+
Sbjct: 487 IDGHCKLGNLQNAMELFQKMKEK---RIRLDVVTYN 519



 Score = 48.5 bits (114), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 1/98 (1%)

Query: 3   HYSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFA 62
           H +    +  +M  K I P  +  N +I  YC  G  +   S    +   G+ PD  ++ 
Sbjct: 565 HLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCISYN 624

Query: 63  TLINGFCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           TLI GF +   +  A  L+++ E+++   L PDV  Y+
Sbjct: 625 TLIYGFVREENMSKAFGLVKKMEEEQ-GGLVPDVFTYN 661


>AT4G01400.3 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           cellular_component unknown; EXPRESSED IN: 23 plant
           structures; EXPRESSED DURING: 15 growth stages; CONTAINS
           InterPro DOMAIN/s: Pentatricopeptide repeat
           (InterPro:IPR002885); BEST Arabidopsis thaliana protein
           match is: Pentatricopeptide repeat (PPR) superfamily
           protein (TAIR:AT5G46100.1); Has 40053 Blast hits to
           12380 proteins in 263 species: Archae - 4; Bacteria -
           27; Metazoa - 366; Fungi - 374; Plants - 38347; Viruses
           - 0; Other Eukaryotes - 935 (source: NCBI BLink). |
           chr4:575843-577243 REVERSE LENGTH=466
          Length = 466

 Score = 57.8 bits (138), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 51/87 (58%), Gaps = 5/87 (5%)

Query: 15  QLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQI 74
           +L G+MPN  + N+L+  +C    ++ A+ +F  + +R   PDV ++  LI GFC+ GQ+
Sbjct: 182 RLHGVMPNTRSYNLLMQAFCLNDDLSIAYQLFGKMLERDVVPDVDSYKILIQGFCRKGQV 241

Query: 75  RPALQLLRRAEDDELVQ-LKPDVVIYS 100
             A++LL    DD L +   PD + Y+
Sbjct: 242 NGAMELL----DDMLNKGFVPDRLSYT 264



 Score = 56.2 bits (134), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 51/96 (53%), Gaps = 3/96 (3%)

Query: 5   STVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATL 64
           S    L  +M  + ++P+  +  ILI  +C  GQ+N A  +   +  +G+ PD  ++ TL
Sbjct: 207 SIAYQLFGKMLERDVVPDVDSYKILIQGFCRKGQVNGAMELLDDMLNKGFVPDRLSYTTL 266

Query: 65  INGFCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           +N  C+  Q+R A +LL R    +L    PD+V Y+
Sbjct: 267 LNSLCRKTQLREAYKLLCRM---KLKGCNPDLVHYN 299


>AT3G53700.1 | Symbols: MEE40 | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:19900303-19902567 FORWARD
           LENGTH=754
          Length = 754

 Score = 57.4 bits (137), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 49/85 (57%), Gaps = 7/85 (8%)

Query: 18  GIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQIRPA 77
           G  P+  T N L++  C  G +  A  +   + + GY PDV+T+ ++I+G C++G+++ A
Sbjct: 290 GFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEA 349

Query: 78  LQLLRRAEDDELV--QLKPDVVIYS 100
           +++L     D+++     P+ V Y+
Sbjct: 350 VEVL-----DQMITRDCSPNTVTYN 369



 Score = 55.5 bits (132), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 41/73 (56%)

Query: 10  LSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFC 69
           L  QM ++G  P+  T N L+  +C  G I  A  +   +   G +PD+ T+ TLI+G C
Sbjct: 527 LMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLC 586

Query: 70  QMGQIRPALQLLR 82
           + G++  A +LLR
Sbjct: 587 KAGRVEVASKLLR 599



 Score = 55.1 bits (131), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 26/77 (33%), Positives = 41/77 (53%)

Query: 9   SLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGF 68
            L+  +  KGI+P+  T N LI   C       A  +F  +R +G +PD FT+  LI+  
Sbjct: 386 ELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSL 445

Query: 69  CQMGQIRPALQLLRRAE 85
           C  G++  AL +L++ E
Sbjct: 446 CSKGKLDEALNMLKQME 462



 Score = 54.3 bits (129), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 45/84 (53%)

Query: 2   KHYSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTF 61
           +++   + L  +M+ KG  P+  T N+LID  C  G+++ A ++   +   G    V T+
Sbjct: 414 RNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITY 473

Query: 62  ATLINGFCQMGQIRPALQLLRRAE 85
            TLI+GFC+  + R A ++    E
Sbjct: 474 NTLIDGFCKANKTREAEEIFDEME 497



 Score = 49.7 bits (117), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 3/87 (3%)

Query: 13  QMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMG 72
           +M++ G+  N VT N LID  C   ++  A  +   +   G +PD +T+ +L+  FC+ G
Sbjct: 495 EMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGG 554

Query: 73  QIRPALQLLRRAEDDELVQLKPDVVIY 99
            I+ A  +++    +     +PD+V Y
Sbjct: 555 DIKKAADIVQAMTSN---GCEPDIVTY 578



 Score = 48.5 bits (114), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 7/96 (7%)

Query: 7   VISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLIN 66
            +++  QM+L G   + +T N LID +C   +   A  +F  +   G   +  T+ TLI+
Sbjct: 454 ALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLID 513

Query: 67  GFCQMGQIRPALQLLRRAEDDELVQL--KPDVVIYS 100
           G C+  ++  A QL+     D+++    KPD   Y+
Sbjct: 514 GLCKSRRVEDAAQLM-----DQMIMEGQKPDKYTYN 544



 Score = 46.6 bits (109), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 35/77 (45%)

Query: 7   VISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLIN 66
            + +  QM  +   PN VT N LI   C   Q+  A  +   +  +G  PDV TF +LI 
Sbjct: 349 AVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQ 408

Query: 67  GFCQMGQIRPALQLLRR 83
           G C     R A++L   
Sbjct: 409 GLCLTRNHRVAMELFEE 425


>AT2G17140.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr2:7462820-7465740 FORWARD
           LENGTH=874
          Length = 874

 Score = 57.4 bits (137), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 43/70 (61%)

Query: 13  QMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMG 72
           QM  KGI P+  + NIL+D  C LG ++ A ++   +++ G  PD  T+  L++G+C +G
Sbjct: 351 QMTDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVCPDAVTYGCLLHGYCSVG 410

Query: 73  QIRPALQLLR 82
           ++  A  LL+
Sbjct: 411 KVDAAKSLLQ 420



 Score = 52.0 bits (123), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 3/91 (3%)

Query: 10  LSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFC 69
           L   M L GI P   T N+LI   C    ++ A  +F  + ++G +P+ FTF  L+ G+C
Sbjct: 134 LYKDMVLCGIAPQTYTFNLLIRALCDSSCVDAARELFDEMPEKGCKPNEFTFGILVRGYC 193

Query: 70  QMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           + G     L+LL   E   ++   P+ VIY+
Sbjct: 194 KAGLTDKGLELLNAMESFGVL---PNKVIYN 221



 Score = 52.0 bits (123), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 52/94 (55%), Gaps = 1/94 (1%)

Query: 8   ISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLING 67
           + L + M+  G++PN V  N ++  +C  G+ + +  +   +R+ G  PD+ TF + I+ 
Sbjct: 202 LELLNAMESFGVLPNKVIYNTIVSSFCREGRNDDSEKMVEKMREEGLVPDIVTFNSRISA 261

Query: 68  FCQMGQIRPALQLLRRAEDDELVQL-KPDVVIYS 100
            C+ G++  A ++    E DE + L +P+ + Y+
Sbjct: 262 LCKEGKVLDASRIFSDMELDEYLGLPRPNSITYN 295


>AT1G06710.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:2056999-2060242 REVERSE
           LENGTH=997
          Length = 997

 Score = 57.0 bits (136), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 48/88 (54%), Gaps = 3/88 (3%)

Query: 12  HQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQM 71
           ++M+  G  PN VT   LI  Y    ++++A  +F T+   G  P++ T++ LI+G C+ 
Sbjct: 542 NEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKA 601

Query: 72  GQIRPALQLLRRAEDDELVQLKPDVVIY 99
           GQ+  A Q+  R    + V   PDV +Y
Sbjct: 602 GQVEKACQIFERMCGSKDV---PDVDMY 626



 Score = 53.1 bits (126), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 38/63 (60%)

Query: 21  PNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQIRPALQL 80
           PN V    +ID  C +G+ + A+ +   + ++G QP+V T+  +I+GF  +G+I   L+L
Sbjct: 742 PNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLEL 801

Query: 81  LRR 83
           L R
Sbjct: 802 LER 804



 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 24/97 (24%), Positives = 50/97 (51%), Gaps = 3/97 (3%)

Query: 4   YSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFAT 63
           Y    S+  +M  +G +P+  T + +++  C+  ++  AF +F  +++ G   DV+T+  
Sbjct: 464 YEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTI 523

Query: 64  LINGFCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           +++ FC+ G I  A +      +   V   P+VV Y+
Sbjct: 524 MVDSFCKAGLIEQARKWFNEMRE---VGCTPNVVTYT 557


>AT5G65560.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:26201012-26203759 REVERSE
           LENGTH=915
          Length = 915

 Score = 57.0 bits (136), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 4/88 (4%)

Query: 13  QMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMG 72
           QM  KG+MPN +T N LI+ YC  G I  A  V   +  R   P+  T+  LI G+C+  
Sbjct: 383 QMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCK-S 441

Query: 73  QIRPALQLLRRAEDDELVQLKPDVVIYS 100
            +  A+ +L +  + +++   PDVV Y+
Sbjct: 442 NVHKAMGVLNKMLERKVL---PDVVTYN 466



 Score = 55.5 bits (132), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 27/85 (31%), Positives = 45/85 (52%)

Query: 5   STVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATL 64
           S  ++L  +M+  GI PN  T  +LID  C   +   A  +   + ++G  P+V T+  L
Sbjct: 340 SEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNAL 399

Query: 65  INGFCQMGQIRPALQLLRRAEDDEL 89
           ING+C+ G I  A+ ++   E  +L
Sbjct: 400 INGYCKRGMIEDAVDVVELMESRKL 424



 Score = 54.3 bits (129), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 40/75 (53%)

Query: 12  HQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQM 71
            QM   G  P+  T    I  YC  G++  A  + A +R+ G  PD+FT+++LI G+  +
Sbjct: 626 QQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDL 685

Query: 72  GQIRPALQLLRRAED 86
           GQ   A  +L+R  D
Sbjct: 686 GQTNFAFDVLKRMRD 700



 Score = 52.8 bits (125), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 7/91 (7%)

Query: 12  HQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQM 71
           ++M  + ++P+ VT N LID  C  G  + A+ + + +  RG  PD +T+ ++I+  C+ 
Sbjct: 451 NKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKS 510

Query: 72  GQIRPALQLLRRAEDDELVQ--LKPDVVIYS 100
            ++  A  L      D L Q  + P+VV+Y+
Sbjct: 511 KRVEEACDLF-----DSLEQKGVNPNVVMYT 536



 Score = 49.3 bits (116), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 36/69 (52%)

Query: 13  QMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMG 72
           +M    + PN  T N +++ YC LG +  A    + I + G  PD FT+ +LI G+CQ  
Sbjct: 208 EMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRK 267

Query: 73  QIRPALQLL 81
            +  A ++ 
Sbjct: 268 DLDSAFKVF 276



 Score = 47.0 bits (110), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 38/79 (48%)

Query: 2   KHYSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTF 61
           K       L   ++ KG+ PN V    LID YC  G+++ A  +   +  +   P+  TF
Sbjct: 511 KRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTF 570

Query: 62  ATLINGFCQMGQIRPALQL 80
             LI+G C  G+++ A  L
Sbjct: 571 NALIHGLCADGKLKEATLL 589


>AT1G64580.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:23985078-23986649 REVERSE
           LENGTH=523
          Length = 523

 Score = 57.0 bits (136), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 56/100 (56%), Gaps = 3/100 (3%)

Query: 1   MKHYSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFT 60
           M  +  VI L H+M+  GI  +  +  ILI C+C   +++ A ++   + K G++P + T
Sbjct: 92  MNKFDIVIYLYHKMENLGISHDLYSFTILIHCFCRCSRLSLALALLGKMMKLGFRPSIVT 151

Query: 61  FATLINGFCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
             +L+NGFCQ  + + A+ L+   +    V   P+VVIY+
Sbjct: 152 LGSLLNGFCQGNRFQEAVSLVDSMDGFGFV---PNVVIYN 188



 Score = 56.6 bits (135), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 3/87 (3%)

Query: 14  MQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQ 73
           M  KG  P+ VT N LI  +C   ++     +F  +  +G   D FT+ TLI+G+CQ G+
Sbjct: 315 MVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGK 374

Query: 74  IRPALQLLRRAEDDELVQLKPDVVIYS 100
           +  A ++  R  D     + PD+V Y+
Sbjct: 375 LNVAQKVFNRMVD---CGVSPDIVTYN 398



 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 3/82 (3%)

Query: 18  GIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQIRPA 77
           G+ P+ VT NIL+DC C+ G+I  A  +   ++K     D+ T+  +I G C+  +++ A
Sbjct: 389 GVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYNIIIQGLCRTDKLKEA 448

Query: 78  LQLLRRAEDDELVQLKPDVVIY 99
             L R         +KPD + Y
Sbjct: 449 WCLFRSLTRK---GVKPDAIAY 467



 Score = 52.8 bits (125), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 3/88 (3%)

Query: 13  QMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMG 72
           +M  +G++ +  T N LI  YC  G++N A  VF  +   G  PD+ T+  L++  C  G
Sbjct: 349 EMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNG 408

Query: 73  QIRPALQLLRRAEDDELVQLKPDVVIYS 100
           +I  AL ++   ED +  ++  D++ Y+
Sbjct: 409 KIEKALVMV---EDLQKSEMDVDIITYN 433



 Score = 52.8 bits (125), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 3/97 (3%)

Query: 4   YSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFAT 63
           +   +SL   M   G +PN V  N +I+  C    +N A  VF  + K+G + D  T+ T
Sbjct: 165 FQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNT 224

Query: 64  LINGFCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           LI+G    G+   A +LLR   D    ++ P+V+ ++
Sbjct: 225 LISGLSNSGRWTDAARLLR---DMVKRKIDPNVIFFT 258



 Score = 51.2 bits (121), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 40/66 (60%)

Query: 22  NFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQIRPALQLL 81
           + +T NI+I   C   ++  A+ +F ++ ++G +PD   + T+I+G C+ G  R A +L 
Sbjct: 428 DIITYNIIIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKGLQREADKLC 487

Query: 82  RRAEDD 87
           RR ++D
Sbjct: 488 RRMKED 493



 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 41/73 (56%)

Query: 9   SLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGF 68
           +L  +M  + ++PN  T N LI+ +C  G +  A  +F  +  +G  PDV T+ TLI GF
Sbjct: 275 NLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGF 334

Query: 69  CQMGQIRPALQLL 81
           C+  ++   ++L 
Sbjct: 335 CKSKRVEDGMKLF 347


>AT5G38730.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:15510901-15512691 FORWARD
           LENGTH=596
          Length = 596

 Score = 56.6 bits (135), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/78 (34%), Positives = 43/78 (55%)

Query: 10  LSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFC 69
           L  +M+ KG+ P+  T N LI  YC       A SV   + + G  P++ T+ + I+GF 
Sbjct: 225 LLSEMEEKGVFPDIFTYNTLISVYCKKSMHFEALSVQDRMERSGVAPNIVTYNSFIHGFS 284

Query: 70  QMGQIRPALQLLRRAEDD 87
           + G++R A +L R  +DD
Sbjct: 285 REGRMREATRLFREIKDD 302



 Score = 48.9 bits (115), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 35/63 (55%)

Query: 19  IMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQIRPAL 78
           +  N VT   LID YC +  I+ A  +   +  RG+ P V T+ +++   C+ G+IR A 
Sbjct: 303 VTANHVTYTTLIDGYCRMNDIDEALRLREVMESRGFSPGVVTYNSILRKLCEDGRIREAN 362

Query: 79  QLL 81
           +LL
Sbjct: 363 RLL 365


>AT1G63630.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:23587298-23588220 FORWARD
           LENGTH=257
          Length = 257

 Score = 56.2 bits (134), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 39/70 (55%)

Query: 14  MQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQ 73
           M  KG  P+ VT + LI+ YC   +++    +F  + +RG   +  T+ TLI+GFCQ+G 
Sbjct: 141 MASKGCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGD 200

Query: 74  IRPALQLLRR 83
           +  A  LL  
Sbjct: 201 LDAAQDLLNE 210



 Score = 53.9 bits (128), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 41/71 (57%)

Query: 13  QMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMG 72
           +M  KGI PN +T N +ID +CH G+ + A  +   + ++   PD+ TF+ LIN F +  
Sbjct: 35  EMHEKGIFPNVLTYNCMIDSFCHSGRWSDADQLLRHMIEKQINPDIVTFSALINAFVKER 94

Query: 73  QIRPALQLLRR 83
           ++  A ++ + 
Sbjct: 95  KVSEAEEIYKE 105



 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 40/69 (57%)

Query: 13  QMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMG 72
           +M    I P  +T N +ID +C   +++ A  +  ++  +G  PDV TF+TLING+C+  
Sbjct: 105 EMLRWSIFPTTITYNSMIDGFCKQDRVDDAKRMLDSMASKGCSPDVVTFSTLINGYCKAK 164

Query: 73  QIRPALQLL 81
           ++   +++ 
Sbjct: 165 RVDNGMEIF 173



 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 3/80 (3%)

Query: 13  QMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMG 72
           +M  +GI+ N VT   LI  +C +G ++ A  +   +   G  PD  TF  ++ G C   
Sbjct: 175 EMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNEMISCGVAPDYITFHCMLAGLCSKK 234

Query: 73  QIRPA---LQLLRRAEDDEL 89
           ++R A   L+ L+++ED  L
Sbjct: 235 ELRKAFAILEDLQKSEDHHL 254


>AT3G09060.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:2766367-2768430 REVERSE
           LENGTH=687
          Length = 687

 Score = 56.2 bits (134), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 32/101 (31%), Positives = 52/101 (51%), Gaps = 7/101 (6%)

Query: 2   KHYSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTF 61
           K +  V SL    +  G+ PN  T N+LI   C   +   A      + K G++PDVF++
Sbjct: 128 KQWVKVESLFAYFETAGVAPNLQTYNVLIKMSCKKKEFEKARGFLDWMWKEGFKPDVFSY 187

Query: 62  ATLINGFCQMGQIRPALQLLRRAEDDELVQ--LKPDVVIYS 100
           +T+IN   + G++  AL+L      DE+ +  + PDV  Y+
Sbjct: 188 STVINDLAKAGKLDDALELF-----DEMSERGVAPDVTCYN 223


>AT5G55840.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:22598038-22601688 FORWARD
           LENGTH=1136
          Length = 1136

 Score = 56.2 bits (134), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 42/69 (60%)

Query: 14  MQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQ 73
           M   GI+PN V+ + LI+ Y + G+   AFSVF  + K G+ P  FT+ +L+ G C+ G 
Sbjct: 574 MTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGH 633

Query: 74  IRPALQLLR 82
           +R A + L+
Sbjct: 634 LREAEKFLK 642



 Score = 52.4 bits (124), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 28/88 (31%), Positives = 49/88 (55%), Gaps = 3/88 (3%)

Query: 13  QMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMG 72
           +M+  G+    +T   +ID  C  G ++ A  +   + K G  PD+ T++ LINGFC++G
Sbjct: 433 RMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVG 492

Query: 73  QIRPALQLLRRAEDDELVQLKPDVVIYS 100
           + + A +++ R      V L P+ +IYS
Sbjct: 493 RFKTAKEIVCRIYR---VGLSPNGIIYS 517



 Score = 49.7 bits (117), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 42/76 (55%)

Query: 6   TVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLI 65
           +V S   +M  + I P+  T NILI+  C  G    +  +   + K GY P + T+ T++
Sbjct: 216 SVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVL 275

Query: 66  NGFCQMGQIRPALQLL 81
           + +C+ G+ + A++LL
Sbjct: 276 HWYCKKGRFKAAIELL 291



 Score = 49.3 bits (116), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/78 (34%), Positives = 40/78 (51%)

Query: 4   YSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFAT 63
           +   I L   M+ KG+  +  T N+LI   C   +I   + +   +RKR   P+  T+ T
Sbjct: 284 FKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNT 343

Query: 64  LINGFCQMGQIRPALQLL 81
           LINGF   G++  A QLL
Sbjct: 344 LINGFSNEGKVLIASQLL 361



 Score = 48.5 bits (114), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 49/98 (50%), Gaps = 3/98 (3%)

Query: 3   HYSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFA 62
           ++   + + + M+ KG+ P+ V+  +L+D  C   + + A   +  +++ G      T+ 
Sbjct: 388 NFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYT 447

Query: 63  TLINGFCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
            +I+G C+ G +  A+ LL     D    + PD+V YS
Sbjct: 448 GMIDGLCKNGFLDEAVVLLNEMSKD---GIDPDIVTYS 482



 Score = 47.0 bits (110), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 42/73 (57%)

Query: 8   ISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLING 67
           + L ++M   GI P+ VT + LI+ +C +G+   A  +   I + G  P+   ++TLI  
Sbjct: 463 VVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYN 522

Query: 68  FCQMGQIRPALQL 80
            C+MG ++ A+++
Sbjct: 523 CCRMGCLKEAIRI 535


>AT1G63630.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:23587613-23588220 FORWARD
           LENGTH=152
          Length = 152

 Score = 56.2 bits (134), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 39/71 (54%)

Query: 13  QMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMG 72
            M  KG  P+ VT + LI+ YC   +++    +F  + +RG   +  T+ TLI+GFCQ+G
Sbjct: 35  SMASKGCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVG 94

Query: 73  QIRPALQLLRR 83
            +  A  LL  
Sbjct: 95  DLDAAQDLLNE 105



 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 38/62 (61%)

Query: 19 IMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQIRPAL 78
          I P  +T N +ID +C   +++ A  +  ++  +G  PDV TF+TLING+C+  ++   +
Sbjct: 6  IFPTTITYNSMIDGFCKQDRVDDAKRMLDSMASKGCSPDVVTFSTLINGYCKAKRVDNGM 65

Query: 79 QL 80
          ++
Sbjct: 66 EI 67



 Score = 47.8 bits (112), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 3/80 (3%)

Query: 13  QMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMG 72
           +M  +GI+ N VT   LI  +C +G ++ A  +   +   G  PD  TF  ++ G C   
Sbjct: 70  EMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNEMISCGVAPDYITFHCMLAGLCSKK 129

Query: 73  QIRPA---LQLLRRAEDDEL 89
           ++R A   L+ L+++ED  L
Sbjct: 130 ELRKAFAILEDLQKSEDHHL 149


>AT1G09900.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr1:3218133-3219929 FORWARD
           LENGTH=598
          Length = 598

 Score = 56.2 bits (134), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 6/87 (6%)

Query: 14  MQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQ 73
           M   G +P+ +    LI  +C LG+   A  +   +   G  PDV T+  +I+G+C+ G+
Sbjct: 128 MVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNVMISGYCKAGE 187

Query: 74  IRPALQLLRRAEDDELVQLKPDVVIYS 100
           I  AL +L R      + + PDVV Y+
Sbjct: 188 INNALSVLDR------MSVSPDVVTYN 208



 Score = 50.4 bits (119), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 3/87 (3%)

Query: 14  MQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQ 73
           M  KG  P+ VT NILI+  C  G +  A  +   + + G QP+  ++  L++GFC+  +
Sbjct: 335 MLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKK 394

Query: 74  IRPALQLLRRAEDDELVQLKPDVVIYS 100
           +  A++ L R          PD+V Y+
Sbjct: 395 MDRAIEYLERMVSRGCY---PDIVTYN 418



 Score = 50.1 bits (118), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 37/69 (53%)

Query: 13  QMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMG 72
           +M  +   P+ +T  ILI+  C    +  A  +   +R RG  PDV T+  L+NG C+ G
Sbjct: 229 RMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEG 288

Query: 73  QIRPALQLL 81
           ++  A++ L
Sbjct: 289 RLDEAIKFL 297



 Score = 49.3 bits (116), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 39/76 (51%)

Query: 8   ISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLING 67
           I   + M   G  PN +T NI++   C  G+   A  + A + ++G+ P V TF  LIN 
Sbjct: 294 IKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINF 353

Query: 68  FCQMGQIRPALQLLRR 83
            C+ G +  A+ +L +
Sbjct: 354 LCRKGLLGRAIDILEK 369


>AT1G09820.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr1:3190594-3192414 REVERSE
           LENGTH=606
          Length = 606

 Score = 55.8 bits (133), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 3/96 (3%)

Query: 5   STVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATL 64
           S  IS+  +M   G+ PN +T N LI+ +C    +  A  +F +++ +G  P    +  L
Sbjct: 348 SEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNML 407

Query: 65  INGFCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           I+ +C++G+I     L    E + +V   PDV  Y+
Sbjct: 408 IDAYCKLGKIDDGFALKEEMEREGIV---PDVGTYN 440



 Score = 55.1 bits (131), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 4/83 (4%)

Query: 17  KGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQIRP 76
           +G +P     N+LID YC LG+I+  F++   + + G  PDV T+  LI G C+ G I  
Sbjct: 395 QGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEA 454

Query: 77  ALQLLRRAEDDELVQLKPDVVIY 99
           A +L  +     L    PD+V +
Sbjct: 455 AKKLFDQLTSKGL----PDLVTF 473



 Score = 53.5 bits (127), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 4/92 (4%)

Query: 9   SLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGF 68
           +L  +M+ +GI+P+  T N LI   C  G I  A  +F  +  +G  PD+ TF  L+ G+
Sbjct: 422 ALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKGL-PDLVTFHILMEGY 480

Query: 69  CQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           C+ G+ R A  LL+       + LKP  + Y+
Sbjct: 481 CRKGESRKAAMLLKEMSK---MGLKPRHLTYN 509



 Score = 50.4 bits (119), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 37/60 (61%)

Query: 13  QMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMG 72
           +M  + I PN  T N++I+  C  G++N A  V   ++  G  P+V ++ TLI+G+C++G
Sbjct: 213 EMIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYCKLG 272



 Score = 50.1 bits (118), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 41/69 (59%)

Query: 13  QMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMG 72
           +M  + + PN ++ N LI+  C+ G+I+ A S+   +   G QP++ T+  LINGFC+  
Sbjct: 321 EMLDQDVKPNVISYNSLINGLCNGGKISEAISMRDKMVSAGVQPNLITYNALINGFCKND 380

Query: 73  QIRPALQLL 81
            ++ AL + 
Sbjct: 381 MLKEALDMF 389


>AT5G21222.1 | Symbols:  | protein kinase family protein |
           chr5:7209422-7213700 FORWARD LENGTH=831
          Length = 831

 Score = 55.8 bits (133), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 53/90 (58%)

Query: 2   KHYSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTF 61
           KH+ +++SL  +++  G+ P+ +  N +I+     G ++ A  +F  +++ G +P   TF
Sbjct: 368 KHFHSLLSLISKVEKNGLKPDTILFNAIINASSESGNLDQAMKIFEKMKESGCKPTASTF 427

Query: 62  ATLINGFCQMGQIRPALQLLRRAEDDELVQ 91
            TLI G+ ++G++  + +LL     DE++Q
Sbjct: 428 NTLIKGYGKIGKLEESSRLLDMMLRDEMLQ 457


>AT1G79540.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:29920334-29922676 REVERSE
           LENGTH=780
          Length = 780

 Score = 55.5 bits (132), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 29/77 (37%), Positives = 41/77 (53%)

Query: 14  MQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQ 73
           M  +GI PN VT  ILI   C  G  + A  +F  ++  G  PD      L++GFC++G+
Sbjct: 224 MTGRGISPNRVTYTILISGLCQRGSADDARKLFYEMQTSGNYPDSVAHNALLDGFCKLGR 283

Query: 74  IRPALQLLRRAEDDELV 90
           +  A +LLR  E D  V
Sbjct: 284 MVEAFELLRLFEKDGFV 300



 Score = 50.8 bits (120), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 1/70 (1%)

Query: 18  GIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQIRPA 77
           G  P+ V+ N+LI+ +C  G I+ A  +   ++ +G  PD  T+ TLING  ++G+   A
Sbjct: 512 GSSPDIVSYNVLINGFCRAGDIDGALKLLNVLQLKGLSPDSVTYNTLINGLHRVGREEEA 571

Query: 78  LQLLRRAEDD 87
            +L   A+DD
Sbjct: 572 FKLF-YAKDD 580



 Score = 50.4 bits (119), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/77 (36%), Positives = 38/77 (49%)

Query: 9   SLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGF 68
           SL  +M      P+  T  ILI   C  G +  A  +F  I K G  P V TF  LI+G 
Sbjct: 394 SLQLEMSETESFPDACTHTILICSMCRNGLVREAEEIFTEIEKSGCSPSVATFNALIDGL 453

Query: 69  CQMGQIRPALQLLRRAE 85
           C+ G+++ A  LL + E
Sbjct: 454 CKSGELKEARLLLHKME 470



 Score = 46.2 bits (108), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 47/91 (51%), Gaps = 3/91 (3%)

Query: 10  LSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFC 69
           L ++MQ  G  P+ V  N L+D +C LG++  AF +     K G+   +  +++LI+G  
Sbjct: 255 LFYEMQTSGNYPDSVAHNALLDGFCKLGRMVEAFELLRLFEKDGFVLGLRGYSSLIDGLF 314

Query: 70  QMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           +  +   A +L           +KPD+++Y+
Sbjct: 315 RARRYTQAFELYANMLKK---NIKPDIILYT 342


>AT3G60040.1 | Symbols:  | F-box family protein |
           chr3:22175937-22179728 REVERSE LENGTH=838
          Length = 838

 Score = 55.5 bits (132), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 53/99 (53%), Gaps = 4/99 (4%)

Query: 2   KHYSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTF 61
           K  + + +L+H M+  GI P+ +    LID Y   G+++ A  +F  +  +G  P+VFT+
Sbjct: 704 KPLAALTTLNH-MKEVGIDPSVLHYTTLIDGYVVSGELDKAKEMFREMTVKGQLPNVFTY 762

Query: 62  ATLINGFCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
            ++I G C  G+ R A  LL+  E        P+ V+YS
Sbjct: 763 NSMIRGLCMAGEFREACWLLKEMESR---GCNPNFVVYS 798


>AT4G26800.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr4:13490251-13491458 FORWARD
           LENGTH=369
          Length = 369

 Score = 55.5 bits (132), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 51/91 (56%), Gaps = 7/91 (7%)

Query: 12  HQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQM 71
           H+M  K I PN +T + LID Y   G+++   SV+  + +    P+VFT+++LI G C  
Sbjct: 107 HEMDSKKINPNVITFSALIDAYAKRGKLSKVDSVYKMMIQMSIDPNVFTYSSLIYGLCMH 166

Query: 72  GQIRPALQLLRRAEDDELVQ--LKPDVVIYS 100
            ++  A+++L     D ++     P+VV YS
Sbjct: 167 NRVDEAIKML-----DLMISKGCTPNVVTYS 192



 Score = 53.9 bits (128), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 50/93 (53%), Gaps = 3/93 (3%)

Query: 8   ISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLING 67
           + ++ QM+  GI  + V   ILID  C    +  A  V   ++ RG  P+V T+++LI G
Sbjct: 33  VYVAGQMEKMGIKRDVVVDTILIDTLCKNRLVVPALEVLKRMKDRGISPNVVTYSSLITG 92

Query: 68  FCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
            C+ G++  A    RR  + +  ++ P+V+ +S
Sbjct: 93  LCKSGRLADA---ERRLHEMDSKKINPNVITFS 122



 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 3/88 (3%)

Query: 13  QMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMG 72
           +M   GI P+ VT++ L++ +C    I  A  V   + K G + DV     LI+  C+  
Sbjct: 3   KMMKLGIEPDIVTASSLVNGFCLSNSIKDAVYVAGQMEKMGIKRDVVVDTILIDTLCKNR 62

Query: 73  QIRPALQLLRRAEDDELVQLKPDVVIYS 100
            + PAL++L+R +D     + P+VV YS
Sbjct: 63  LVVPALEVLKRMKDR---GISPNVVTYS 87


>AT5G57250.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:23195609-23198524 REVERSE
           LENGTH=971
          Length = 971

 Score = 55.1 bits (131), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/80 (32%), Positives = 41/80 (51%)

Query: 10  LSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFC 69
           L   M  KG++PN +  N ++D YC LGQ   A  V +        PD FT +++I G+C
Sbjct: 747 LLDSMVSKGLVPNIIIYNSIVDGYCKLGQTEDAMRVVSRKMMGRVTPDAFTVSSMIKGYC 806

Query: 70  QMGQIRPALQLLRRAEDDEL 89
           + G +  AL +    +D  +
Sbjct: 807 KKGDMEEALSVFTEFKDKNI 826



 Score = 52.8 bits (125), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 49/93 (52%), Gaps = 3/93 (3%)

Query: 8   ISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLING 67
           + L  +M  +G+ PN +T   +I   C +G++  AF +F  I   G + D F + TLI+G
Sbjct: 297 LGLLGKMIKEGVEPNLITYTAIIRGLCKMGKLEEAFVLFNRILSVGIEVDEFLYVTLIDG 356

Query: 68  FCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
            C+ G +  A  +L    D E   ++P ++ Y+
Sbjct: 357 ICRKGNLNRAFSML---GDMEQRGIQPSILTYN 386



 Score = 52.0 bits (123), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 10/73 (13%)

Query: 29  LIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQIRPALQLLRRAEDDE 88
           LID  C  G +N AFS+   + +RG QP + T+ T+ING C  G++         +E DE
Sbjct: 353 LIDGICRKGNLNRAFSMLGDMEQRGIQPSILTYNTVINGLCMAGRV---------SEADE 403

Query: 89  LVQ-LKPDVVIYS 100
           + + +  DV+ YS
Sbjct: 404 VSKGVVGDVITYS 416



 Score = 47.4 bits (111), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 38/71 (53%)

Query: 13  QMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMG 72
           +M  KG+  + V+ +ILID     G +  A  +   + K G +P++ T+  +I G C+MG
Sbjct: 267 EMVEKGMNRDVVSYSILIDGLSKEGNVEEALGLLGKMIKEGVEPNLITYTAIIRGLCKMG 326

Query: 73  QIRPALQLLRR 83
           ++  A  L  R
Sbjct: 327 KLEEAFVLFNR 337



 Score = 47.0 bits (110), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 32/64 (50%)

Query: 19  IMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQIRPAL 78
           + P+  T + +I  YC  G +  A SVF   + +    D F F  LI GFC  G++  A 
Sbjct: 791 VTPDAFTVSSMIKGYCKKGDMEEALSVFTEFKDKNISADFFGFLFLIKGFCTKGRMEEAR 850

Query: 79  QLLR 82
            LLR
Sbjct: 851 GLLR 854


>AT2G06000.2 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr2:2328000-2329610 REVERSE
           LENGTH=536
          Length = 536

 Score = 54.7 bits (130), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 41/73 (56%)

Query: 18  GIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQIRPA 77
           G  P+ VT   LID YC +GQ++  F ++  +  RG  P+ FT++ LIN  C   ++  A
Sbjct: 342 GCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKA 401

Query: 78  LQLLRRAEDDELV 90
            +LL +    +++
Sbjct: 402 RELLGQLASKDII 414



 Score = 52.4 bits (124), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 3/92 (3%)

Query: 9   SLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGF 68
           SL   M   GI P  VT N+L+D Y   G++  A  +   +   G  PDV TF +LI+G+
Sbjct: 298 SLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGY 357

Query: 69  CQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           C++GQ+    Q  R  E+     + P+   YS
Sbjct: 358 CRVGQVS---QGFRLWEEMNARGMFPNAFTYS 386



 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 2/76 (2%)

Query: 25  TSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQIRPALQLLRRA 84
           T NILI   C +G+   A  +   +   G +PD+ T+ TLI GFC+  ++  A ++ +  
Sbjct: 208 TFNILIRGLCGVGKAEKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDV 267

Query: 85  EDDELVQLKPDVVIYS 100
           +   +    PDVV Y+
Sbjct: 268 KSGSVCS--PDVVTYT 281



 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 44/76 (57%), Gaps = 6/76 (7%)

Query: 18  GIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGY-QPDVFTFATLINGFCQMGQIRP 76
           G  P+ VT N LI  +C   ++N A  +F  ++      PDV T+ ++I+G+C+ G++R 
Sbjct: 236 GCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSPDVVTYTSMISGYCKAGKMRE 295

Query: 77  ALQLLRRAEDDELVQL 92
           A  LL     D++++L
Sbjct: 296 ASSLL-----DDMLRL 306


>AT2G06000.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr2:2328000-2329610 REVERSE
           LENGTH=536
          Length = 536

 Score = 54.7 bits (130), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 24/73 (32%), Positives = 41/73 (56%)

Query: 18  GIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQIRPA 77
           G  P+ VT   LID YC +GQ++  F ++  +  RG  P+ FT++ LIN  C   ++  A
Sbjct: 342 GCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKA 401

Query: 78  LQLLRRAEDDELV 90
            +LL +    +++
Sbjct: 402 RELLGQLASKDII 414



 Score = 52.4 bits (124), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 47/92 (51%), Gaps = 3/92 (3%)

Query: 9   SLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGF 68
           SL   M   GI P  VT N+L+D Y   G++  A  +   +   G  PDV TF +LI+G+
Sbjct: 298 SLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGY 357

Query: 69  CQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           C++GQ+    Q  R  E+     + P+   YS
Sbjct: 358 CRVGQVS---QGFRLWEEMNARGMFPNAFTYS 386



 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 2/76 (2%)

Query: 25  TSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQIRPALQLLRRA 84
           T NILI   C +G+   A  +   +   G +PD+ T+ TLI GFC+  ++  A ++ +  
Sbjct: 208 TFNILIRGLCGVGKAEKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDV 267

Query: 85  EDDELVQLKPDVVIYS 100
           +   +    PDVV Y+
Sbjct: 268 KSGSVCS--PDVVTYT 281



 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/76 (32%), Positives = 44/76 (57%), Gaps = 6/76 (7%)

Query: 18  GIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGY-QPDVFTFATLINGFCQMGQIRP 76
           G  P+ VT N LI  +C   ++N A  +F  ++      PDV T+ ++I+G+C+ G++R 
Sbjct: 236 GCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSPDVVTYTSMISGYCKAGKMRE 295

Query: 77  ALQLLRRAEDDELVQL 92
           A  LL     D++++L
Sbjct: 296 ASSLL-----DDMLRL 306


>AT5G02860.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:654102-656561 FORWARD
           LENGTH=819
          Length = 819

 Score = 54.7 bits (130), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 49/89 (55%), Gaps = 3/89 (3%)

Query: 12  HQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQM 71
           ++M L G  P+ VT N LI  Y   G ++ A  +   + ++G +PDVFT+ TL++GF + 
Sbjct: 338 NEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERA 397

Query: 72  GQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           G++  A+ +     +      KP++  ++
Sbjct: 398 GKVESAMSIFEEMRN---AGCKPNICTFN 423


>AT2G32630.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr2:13844834-13846708 FORWARD
           LENGTH=624
          Length = 624

 Score = 54.7 bits (130), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 39/69 (56%)

Query: 13  QMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMG 72
           +M  KG+ PN +T N++I  YC  G+I  A  + A +   G  PD +T+ +LI+G C   
Sbjct: 494 EMSSKGVQPNAITYNVMIYAYCKQGKIKEARKLRANMEANGMDPDSYTYTSLIHGECIAD 553

Query: 73  QIRPALQLL 81
            +  A++L 
Sbjct: 554 NVDEAMRLF 562



 Score = 49.7 bits (117), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 3/100 (3%)

Query: 1   MKHYSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFT 60
           +K Y        +M   G+  + V+   LID YC  G +  A  +F  +  +G QP+  T
Sbjct: 447 LKRYDEAKQWLFRMMEGGVKLSTVSYTNLIDVYCKEGNVEEAKRLFVEMSSKGVQPNAIT 506

Query: 61  FATLINGFCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           +  +I  +C+ G+I+ A +L    E +    + PD   Y+
Sbjct: 507 YNVMIYAYCKQGKIKEARKLRANMEAN---GMDPDSYTYT 543



 Score = 49.3 bits (116), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 42/74 (56%)

Query: 10  LSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFC 69
           L ++MQ KG+    V  N LID YC  G ++ A  ++  + ++G+Q DVFT  T+ + F 
Sbjct: 386 LMNEMQSKGVNITQVVFNTLIDGYCRKGMVDEASMIYDVMEQKGFQADVFTCNTIASCFN 445

Query: 70  QMGQIRPALQLLRR 83
           ++ +   A Q L R
Sbjct: 446 RLKRYDEAKQWLFR 459


>AT1G63320.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:23488884-23489530 REVERSE
           LENGTH=189
          Length = 189

 Score = 54.7 bits (130), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 52/98 (53%), Gaps = 12/98 (12%)

Query: 12  HQMQLKGIMPNFVTSNILIDCYCHLGQINFA---------FSVFATIRKRGYQPDVFTFA 62
            +M   G+ P+ +T NIL+D  C  G++  A         + +F ++  +G +P+V T+ 
Sbjct: 40  KEMVSDGVPPDIMTYNILLDGLCKNGKLEKALVAGKVEDGWDLFCSLSLKGVKPNVVTYT 99

Query: 63  TLINGFCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           T+I+GFC+ G    A  L R+ ++D  +   PD   Y+
Sbjct: 100 TMISGFCKKGFKEEAYTLFRKMKEDGPL---PDSGTYN 134



 Score = 49.3 bits (116), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 8/100 (8%)

Query: 8   ISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLING 67
           + L  +M  +G++ N VT   LI      G  + A  +F  +   G  PD+ T+  L++G
Sbjct: 1   MELFREMSQRGLVGNTVTYTTLIQGLFQAGDCDMAQEIFKEMVSDGVPPDIMTYNILLDG 60

Query: 68  FCQMGQIRPALQLLRRAEDD-------ELVQLKPDVVIYS 100
            C+ G++  AL +  + ED         L  +KP+VV Y+
Sbjct: 61  LCKNGKLEKAL-VAGKVEDGWDLFCSLSLKGVKPNVVTYT 99


>AT1G20300.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:7029701-7031314 FORWARD
           LENGTH=537
          Length = 537

 Score = 54.3 bits (129), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 3/88 (3%)

Query: 13  QMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMG 72
           +M+L GI PN  T +I+ID  C  GQI+ A  VFA +   G  P+  TF  L+    + G
Sbjct: 280 EMKLAGIEPNVYTYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAITFNNLMRVHVKAG 339

Query: 73  QIRPALQLLRRAEDDELVQLKPDVVIYS 100
           +    LQ+  + +    +  +PD + Y+
Sbjct: 340 RTEKVLQVYNQMKK---LGCEPDTITYN 364


>AT4G31850.1 | Symbols: PGR3 | proton gradient regulation 3 |
           chr4:15403020-15406358 FORWARD LENGTH=1112
          Length = 1112

 Score = 54.3 bits (129), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 50/83 (60%), Gaps = 3/83 (3%)

Query: 18  GIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQIRPA 77
           G++P+ VT N+++ CY  +G+I+ A  + + + + G +PDV    +LIN   +  ++  A
Sbjct: 498 GLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRVDEA 557

Query: 78  LQLLRRAEDDELVQLKPDVVIYS 100
            ++  R ++   ++LKP VV Y+
Sbjct: 558 WKMFMRMKE---MKLKPTVVTYN 577



 Score = 53.9 bits (128), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 37/71 (52%)

Query: 8   ISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLING 67
           I L   M  KG  PN +T N L DC C   ++  A  +   +   G  PDVFT+ T+I G
Sbjct: 593 IELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTYNTIIFG 652

Query: 68  FCQMGQIRPAL 78
             + GQ++ A+
Sbjct: 653 LVKNGQVKEAM 663



 Score = 52.0 bits (123), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 48/92 (52%), Gaps = 2/92 (2%)

Query: 9    SLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGF 68
            +L  +M  +G+ P+  T ++L+DC C +G+++     F  +++ G  PDV  +  +ING 
Sbjct: 947  ALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGL 1006

Query: 69   CQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
             +  ++  AL L    +      + PD+  Y+
Sbjct: 1007 GKSHRLEEALVLFNEMKTSR--GITPDLYTYN 1036



 Score = 50.1 bits (118), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 3/83 (3%)

Query: 18   GIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQIRPA 77
            G  PN    NILI+ +   G+ + A ++F  + K G +PD+ T++ L++  C +G++   
Sbjct: 921  GCRPNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEG 980

Query: 78   LQLLRRAEDDELVQLKPDVVIYS 100
            L   +  ++     L PDVV Y+
Sbjct: 981  LHYFKELKES---GLNPDVVCYN 1000



 Score = 49.7 bits (117), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 3/87 (3%)

Query: 13  QMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMG 72
           +M+  G +P+ VT  IL+D  C  G    AF     +R +G  P++ T+ TLI G  ++ 
Sbjct: 353 EMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVH 412

Query: 73  QIRPALQLLRRAEDDELVQLKPDVVIY 99
           ++  AL+L    E    + +KP    Y
Sbjct: 413 RLDDALELFGNMES---LGVKPTAYTY 436



 Score = 47.0 bits (110), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 3/94 (3%)

Query: 6   TVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLI 65
           +V+ L  +M+  G+ PN  T  I I      G+IN A+ +   +   G  PDV T+  LI
Sbjct: 241 SVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLI 300

Query: 66  NGFCQMGQIRPALQLLRRAEDDELVQLKPDVVIY 99
           +  C   ++  A ++  + +     + KPD V Y
Sbjct: 301 DALCTARKLDCAKEVFEKMKTG---RHKPDRVTY 331


>AT1G02420.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:493683-495158 FORWARD
           LENGTH=491
          Length = 491

 Score = 53.9 bits (128), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 3/87 (3%)

Query: 14  MQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQ 73
           M+ KG+ P+ VT N LID YC   +I  A+ +   +R+    PDV T+ T+I G   +GQ
Sbjct: 237 MKGKGLKPDVVTYNSLIDVYCKDREIEKAYKLIDKMREEEETPDVITYTTVIGGLGLIGQ 296

Query: 74  IRPALQLLRRAEDDELVQLKPDVVIYS 100
              A ++L+  ++       PDV  Y+
Sbjct: 297 PDKAREVLKEMKE---YGCYPDVAAYN 320


>AT3G06920.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:2181717-2184449 FORWARD
           LENGTH=871
          Length = 871

 Score = 53.9 bits (128), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 54/91 (59%), Gaps = 3/91 (3%)

Query: 10  LSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFC 69
           L + M+ +G + +    NI+ID +C  G++N A+ +   ++ +G++P V T+ ++I+G  
Sbjct: 574 LFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLA 633

Query: 70  QMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           ++ ++  A  L   A+     +++ +VVIYS
Sbjct: 634 KIDRLDEAYMLFEEAKSK---RIELNVVIYS 661



 Score = 49.3 bits (116), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 44/83 (53%)

Query: 6   TVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLI 65
           T   L   MQ  G+ PN  T NI++D  C   +++ A ++F  +  +   PD  TF +LI
Sbjct: 395 TAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLI 454

Query: 66  NGFCQMGQIRPALQLLRRAEDDE 88
           +G  ++G++  A ++  +  D +
Sbjct: 455 DGLGKVGRVDDAYKVYEKMLDSD 477


>AT1G63230.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:23451144-23452201 FORWARD
           LENGTH=323
          Length = 323

 Score = 53.9 bits (128), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/100 (33%), Positives = 52/100 (52%), Gaps = 3/100 (3%)

Query: 1   MKHYSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFT 60
           M    + ++L  +M+   I  + V  N +ID  C  G    A ++F  +  +G  PDV T
Sbjct: 54  MGDTESALNLLSKMEETHIKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMHDKGIFPDVIT 113

Query: 61  FATLINGFCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           ++ +I+ FC+ G+   A QLLR   D    Q+ PDVV +S
Sbjct: 114 YSGMIDSFCRSGRWTDAEQLLR---DMIERQINPDVVTFS 150



 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 40/68 (58%)

Query: 13  QMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMG 72
            M  +GI P  +T N +ID +C   ++N A  +  ++  +   PDV TF+TLING+C+  
Sbjct: 171 DMLRRGIFPTTITYNSMIDGFCKQDRLNDAKRMLDSMASKSCSPDVVTFSTLINGYCKAK 230

Query: 73  QIRPALQL 80
           ++   +++
Sbjct: 231 RVDNGMEI 238



 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 38/68 (55%)

Query: 14  MQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQ 73
           M  K   P+ VT + LI+ YC   +++    +F  + +RG   +  T+ TLI+GFCQ+G 
Sbjct: 207 MASKSCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGD 266

Query: 74  IRPALQLL 81
           +  A  LL
Sbjct: 267 LDAAQDLL 274



 Score = 51.2 bits (121), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 7/83 (8%)

Query: 18  GIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQIRPA 77
           G  P+ VT   L++  C  G++  A ++   + + G+QP    + T+ING C+MG    A
Sbjct: 5   GCRPDVVTFTTLMNGLCCEGRVLQALALVDRMVEEGHQP----YGTIINGLCKMGDTESA 60

Query: 78  LQLLRRAEDDELVQLKPDVVIYS 100
           L LL + E+     +K  VVIY+
Sbjct: 61  LNLLSKMEE---THIKAHVVIYN 80



 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 45/86 (52%), Gaps = 4/86 (4%)

Query: 3   HYSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFA 62
           H+    +L  +M  KGI P+ +T + +ID +C  G+   A  +   + +R   PDV TF+
Sbjct: 91  HHIHAQNLFTEMHDKGIFPDVITYSGMIDSFCRSGRWTDAEQLLRDMIERQINPDVVTFS 150

Query: 63  TLINGFCQMGQIRPALQ----LLRRA 84
            LIN   + G++  A +    +LRR 
Sbjct: 151 ALINALVKEGKVSEAEEIYGDMLRRG 176


>AT3G04760.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr3:1303884-1305692 REVERSE
           LENGTH=602
          Length = 602

 Score = 53.5 bits (127), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 3/89 (3%)

Query: 12  HQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQM 71
           +Q+      P  +T  ILI+     G ++ A  +   +  RG +PD+FT+ T+I G C+ 
Sbjct: 217 NQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKE 276

Query: 72  GQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           G +  A +++R     EL   +PDV+ Y+
Sbjct: 277 GMVDRAFEMVRNL---ELKGCEPDVISYN 302



 Score = 53.1 bits (126), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 3/80 (3%)

Query: 21  PNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQIRPALQL 80
           PN VT +ILI   C  G+I  A ++   ++++G  PD +++  LI  FC+ G++  A++ 
Sbjct: 331 PNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEF 390

Query: 81  LRRAEDDELVQLKPDVVIYS 100
           L     D  +   PD+V Y+
Sbjct: 391 LETMISDGCL---PDIVNYN 407



 Score = 52.8 bits (125), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 47/98 (47%), Gaps = 4/98 (4%)

Query: 3   HYSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFA 62
           +Y   + L   M  KG  P+ +    LI  +  L  I  A  V   + K G QPDVF + 
Sbjct: 104 NYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEILEKFG-QPDVFAYN 162

Query: 63  TLINGFCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
            LINGFC+M +I  A ++L R    +     PD V Y+
Sbjct: 163 ALINGFCKMNRIDDATRVLDRMRSKD---FSPDTVTYN 197



 Score = 50.4 bits (119), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 38/70 (54%)

Query: 13  QMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMG 72
           +M   GI P+ +T N +I C C  G ++ AF +   +R   + P V T+  ++ GFC+  
Sbjct: 463 EMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAH 522

Query: 73  QIRPALQLLR 82
           +I  A+ +L 
Sbjct: 523 RIEDAINVLE 532



 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 7/90 (7%)

Query: 13  QMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMG 72
           +M+ K   P+ VT NI+I   C  G+++ A  V   +     QP V T+  LI      G
Sbjct: 183 RMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEG 242

Query: 73  QIRPALQLLRRAEDDELVQ--LKPDVVIYS 100
            +  AL+L+     DE++   LKPD+  Y+
Sbjct: 243 GVDEALKLM-----DEMLSRGLKPDMFTYN 267


>AT5G59900.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:24123983-24126706 REVERSE
           LENGTH=907
          Length = 907

 Score = 53.5 bits (127), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 3/83 (3%)

Query: 18  GIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQIRPA 77
           G+ PN VT +ILID +C  G+++ A S    +   G +  V+ + +LING C+ G I  A
Sbjct: 397 GLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAA 456

Query: 78  LQLLRRAEDDELVQLKPDVVIYS 100
              +    +    +L+P VV Y+
Sbjct: 457 EGFMAEMINK---KLEPTVVTYT 476



 Score = 53.1 bits (126), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 3/89 (3%)

Query: 12  HQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQM 71
           H   LKG++ N  T N+LI  +C  G+I  A  +   +   G  PD  T+ T+IN  C+ 
Sbjct: 776 HNAILKGLLANTATYNMLIRGFCRQGRIEEASELITRMIGDGVSPDCITYTTMINELCRR 835

Query: 72  GQIRPALQLLRRAEDDELVQLKPDVVIYS 100
             ++ A++L     +     ++PD V Y+
Sbjct: 836 NDVKKAIELWNSMTEK---GIRPDRVAYN 861



 Score = 52.8 bits (125), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 39/70 (55%)

Query: 8   ISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLING 67
           + L ++M    + PN VT N++I+ YC  G ++ AF     + ++G  PD +++  LI+G
Sbjct: 527 VKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHG 586

Query: 68  FCQMGQIRPA 77
            C  GQ   A
Sbjct: 587 LCLTGQASEA 596



 Score = 52.4 bits (124), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 3/88 (3%)

Query: 13  QMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMG 72
           +M  K + P  VT   L+  YC  G+IN A  ++  +  +G  P ++TF TL++G  + G
Sbjct: 462 EMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAG 521

Query: 73  QIRPALQLLRRAEDDELVQLKPDVVIYS 100
            IR A++L     +     +KP+ V Y+
Sbjct: 522 LIRDAVKLFNEMAE---WNVKPNRVTYN 546


>AT4G19890.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr4:10786948-10789053 REVERSE
           LENGTH=701
          Length = 701

 Score = 53.1 bits (126), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 35/63 (55%)

Query: 18  GIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQIRPA 77
           G++P   T   +I CYC  G I+ A   F  +++ G  PD FT+ +LI+G C+   +  A
Sbjct: 528 GLIPTKETYTSMISCYCKEGDIDLALKYFHNMKRHGCVPDSFTYGSLISGLCKKSMVDEA 587

Query: 78  LQL 80
            +L
Sbjct: 588 CKL 590



 Score = 51.2 bits (121), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 4/84 (4%)

Query: 18  GIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQIRPA 77
           G  PN +    LID  C  G I  AF +   + + G++P+V+T   LI+G C+ G    A
Sbjct: 282 GFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKRGWTEKA 341

Query: 78  LQL-LRRAEDDELVQLKPDVVIYS 100
            +L L+    D     KP+V  Y+
Sbjct: 342 FRLFLKLVRSD---TYKPNVHTYT 362



 Score = 49.7 bits (117), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 49/89 (55%), Gaps = 7/89 (7%)

Query: 14  MQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQ 73
           M  +G +P+  T  +++   C  G +N A   F  +   G++P++  F +LI+G C+ G 
Sbjct: 243 MIQRGFIPDNATCTLILTALCENGLVNRAIWYFRKMIDLGFKPNLINFTSLIDGLCKKGS 302

Query: 74  IRPALQLLRRAEDDELVQ--LKPDVVIYS 100
           I+ A ++L     +E+V+   KP+V  ++
Sbjct: 303 IKQAFEML-----EEMVRNGWKPNVYTHT 326



 Score = 48.1 bits (113), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 4/89 (4%)

Query: 13  QMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVF-ATIRKRGYQPDVFTFATLINGFCQM 71
           +M   G  PN  T   LID  C  G    AF +F   +R   Y+P+V T+ ++I G+C+ 
Sbjct: 312 EMVRNGWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSDTYKPNVHTYTSMIGGYCKE 371

Query: 72  GQIRPALQLLRRAEDDELVQLKPDVVIYS 100
            ++  A  L  R ++  L    P+V  Y+
Sbjct: 372 DKLNRAEMLFSRMKEQGLF---PNVNTYT 397



 Score = 47.8 bits (112), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 3/80 (3%)

Query: 21  PNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQIRPALQL 80
           PN  T   +I  YC   ++N A  +F+ ++++G  P+V T+ TLING C+ G    A +L
Sbjct: 356 PNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGSFGRAYEL 415

Query: 81  LRRAEDDELVQLKPDVVIYS 100
           +    D+  +   P++  Y+
Sbjct: 416 MNLMGDEGFM---PNIYTYN 432


>AT1G51965.1 | Symbols: ABO5 | ABA Overly-Sensitive 5 |
           chr1:19312078-19314145 REVERSE LENGTH=650
          Length = 650

 Score = 53.1 bits (126), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 28/100 (28%), Positives = 52/100 (52%), Gaps = 3/100 (3%)

Query: 1   MKHYSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFT 60
           +K  S +  L  +M+  G  P+  T NILI  +  +G+++ A ++F  + +   +PD+ +
Sbjct: 455 LKQISHIHDLFEKMKKDGPSPDIFTYNILIASFGRVGEVDEAINIFEELERSDCKPDIIS 514

Query: 61  FATLINGFCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           + +LIN   + G +  A    +  ++     L PDVV YS
Sbjct: 515 YNSLINCLGKNGDVDEAHVRFKEMQEK---GLNPDVVTYS 551



 Score = 50.4 bits (119), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/88 (27%), Positives = 49/88 (55%), Gaps = 3/88 (3%)

Query: 13  QMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMG 72
           +MQ KG+ P+ VT + L++C+    ++  A+S+F  +  +G QP++ T+  L++   + G
Sbjct: 537 EMQEKGLNPDVVTYSTLMECFGKTERVEMAYSLFEEMLVKGCQPNIVTYNILLDCLEKNG 596

Query: 73  QIRPALQLLRRAEDDELVQLKPDVVIYS 100
           +   A+ L  + +   L    PD + Y+
Sbjct: 597 RTAEAVDLYSKMKQQGLT---PDSITYT 621



 Score = 49.3 bits (116), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 49/94 (52%), Gaps = 3/94 (3%)

Query: 7   VISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLIN 66
            I +  ++  KG++ + +  N +      L QI+    +F  ++K G  PD+FT+  LI 
Sbjct: 426 AIEMLSKIHEKGVVTDTMMYNTVFSALGKLKQISHIHDLFEKMKKDGPSPDIFTYNILIA 485

Query: 67  GFCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
            F ++G++  A+ +    E+ E    KPD++ Y+
Sbjct: 486 SFGRVGEVDEAINIF---EELERSDCKPDIISYN 516


>AT2G26790.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr2:11425270-11427669 REVERSE
           LENGTH=799
          Length = 799

 Score = 53.1 bits (126), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 7/79 (8%)

Query: 24  VTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQIRPALQLLRR 83
           V  N+  D    LG++  AF +   ++ RG  PDV  + TLI+G+C  G++  AL L+  
Sbjct: 389 VCYNVAFDALSKLGRVEEAFELLQEMKDRGIVPDVINYTTLIDGYCLQGKVVDALDLI-- 446

Query: 84  AEDDELV--QLKPDVVIYS 100
              DE++   + PD++ Y+
Sbjct: 447 ---DEMIGNGMSPDLITYN 462



 Score = 50.4 bits (119), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 43/72 (59%), Gaps = 3/72 (4%)

Query: 29  LIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQIRPALQLLRRAEDDE 88
           +I  +C L  +  A  +F T+ +RG  PD+FT+  +I+ +C++ +++ A  L    ED +
Sbjct: 597 MIGAFCKLNNVREAQVLFDTMVERGLIPDLFTYTIMIHTYCRLNELQKAESLF---EDMK 653

Query: 89  LVQLKPDVVIYS 100
              +KPDVV Y+
Sbjct: 654 QRGIKPDVVTYT 665



 Score = 48.9 bits (115), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 37/58 (63%)

Query: 14  MQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQM 71
           M  +G++P+  T  I+I  YC L ++  A S+F  +++RG +PDV T+  L++ + ++
Sbjct: 617 MVERGLIPDLFTYTIMIHTYCRLNELQKAESLFEDMKQRGIKPDVVTYTVLLDRYLKL 674


>AT1G13800.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:4731056-4733707 REVERSE
           LENGTH=883
          Length = 883

 Score = 53.1 bits (126), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 47/84 (55%), Gaps = 10/84 (11%)

Query: 17  KGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQIRP 76
           K I+P+  T  I+I+ YC L +   A+++F  +++R  +PDV T++ L+N         P
Sbjct: 629 KKIVPDLFTYTIMINTYCRLNEPKQAYALFEDMKRRDVKPDVVTYSVLLNS-------DP 681

Query: 77  ALQLLRRAEDDELVQLKPDVVIYS 100
            L + R  E  +++   PDVV Y+
Sbjct: 682 ELDMKREMEAFDVI---PDVVYYT 702



 Score = 48.5 bits (114), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 3/92 (3%)

Query: 9   SLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGF 68
           +LS +M+   + P+     +LID  C +G +  A  +F  + + G  PD   +  LI   
Sbjct: 747 NLSREMKAFDVKPDVFYYTVLIDWQCKIGDLGEAKRIFDQMIESGVDPDAAPYTALIACC 806

Query: 69  CQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           C+MG ++ A  +  R  +     +KPDVV Y+
Sbjct: 807 CKMGYLKEAKMIFDRMIES---GVKPDVVPYT 835



 Score = 47.4 bits (111), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 46/98 (46%), Gaps = 3/98 (3%)

Query: 3   HYSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFA 62
           + S    L  +M   G+ P       LI  +C +  +  A   F  +  +   PD+FT+ 
Sbjct: 580 YISKAQDLLDRMWKLGVEPEKSMYGKLIGAWCRVNNVRKAREFFEILVTKKIVPDLFTYT 639

Query: 63  TLINGFCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
            +IN +C++ + + A  L    ED +   +KPDVV YS
Sbjct: 640 IMINTYCRLNEPKQAYALF---EDMKRRDVKPDVVTYS 674



 Score = 47.0 bits (110), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 46/93 (49%), Gaps = 10/93 (10%)

Query: 8   ISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLING 67
           + +  +M+   ++P+ V   I+I+ YCHL  +   +++F  +++R   PDV T+  L+  
Sbjct: 683 LDMKREMEAFDVIPDVVYYTIMINRYCHLNDLKKVYALFKDMKRREIVPDVVTYTVLLKN 742

Query: 68  FCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
                  +P   L R     +   +KPDV  Y+
Sbjct: 743 -------KPERNLSREM---KAFDVKPDVFYYT 765



 Score = 46.6 bits (109), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 3/100 (3%)

Query: 1   MKHYSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFT 60
           M ++S    L  + +   I  + V  N+  D    LG++  A  +F  +  +G  PDV  
Sbjct: 374 MGNFSEAYDLFKEFRETNISLDRVCYNVAFDALGKLGKVEEAIELFREMTGKGIAPDVIN 433

Query: 61  FATLINGFCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           + TLI G C  G+   A  L+   +        PD+VIY+
Sbjct: 434 YTTLIGGCCLQGKCSDAFDLMIEMDG---TGKTPDIVIYN 470


>AT5G14770.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:4772881-4775697 REVERSE
           LENGTH=938
          Length = 938

 Score = 52.8 bits (125), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 42/71 (59%)

Query: 20  MPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQIRPALQ 79
           +PN VT   L+D  C  G ++ A  +   + ++   P+V T++++ING+ + G +  A+ 
Sbjct: 361 VPNVVTYTALVDGLCKAGDLSSAEFIITQMLEKSVIPNVVTYSSMINGYVKKGMLEEAVS 420

Query: 80  LLRRAEDDELV 90
           LLR+ ED  +V
Sbjct: 421 LLRKMEDQNVV 431



 Score = 48.9 bits (115), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 10/85 (11%)

Query: 18  GIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQIRPA 77
           G+ P+    N+LI  +C +G+++FA S+   +R R    D  T+ T+I+G C+ G    A
Sbjct: 124 GVSPDVFALNVLIHSFCKVGRLSFAISL---LRNRVISIDTVTYNTVISGLCEHGLADEA 180

Query: 78  LQLLRRAEDDELVQLK--PDVVIYS 100
            Q L      E+V++   PD V Y+
Sbjct: 181 YQFL-----SEMVKMGILPDTVSYN 200


>AT2G17525.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr2:7624178-7626058 FORWARD
           LENGTH=626
          Length = 626

 Score = 52.8 bits (125), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 44/85 (51%)

Query: 5   STVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATL 64
           S  + +  +++ KG   + V  N L+  YC LG++  A   F  + ++GY P+V T+  L
Sbjct: 300 SEALEVLERVESKGGKVDVVACNTLVKGYCALGKMRVAQRFFIEMERKGYLPNVETYNLL 359

Query: 65  INGFCQMGQIRPALQLLRRAEDDEL 89
           I G+C +G +  AL      + D +
Sbjct: 360 IAGYCDVGMLDSALDTFNDMKTDAI 384



 Score = 51.2 bits (121), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 41/79 (51%)

Query: 13  QMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMG 72
           +M+ KG +PN  T N+LI  YC +G ++ A   F  ++    + +  TF TLI G    G
Sbjct: 343 EMERKGYLPNVETYNLLIAGYCDVGMLDSALDTFNDMKTDAIRWNFATFNTLIRGLSIGG 402

Query: 73  QIRPALQLLRRAEDDELVQ 91
           +    L++L   +D + V 
Sbjct: 403 RTDDGLKILEMMQDSDTVH 421


>AT1G55630.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:20791817-20793250 REVERSE
           LENGTH=477
          Length = 477

 Score = 52.8 bits (125), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 3/83 (3%)

Query: 18  GIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQIRPA 77
           G  P+ V   ++I  Y   G++  A  +F  + ++G  P+VFT+ ++I GFC  G+ + A
Sbjct: 357 GCTPDVVCYTVMITGYISGGELEKAEEMFKEMTEKGQLPNVFTYNSMIRGFCMAGKFKEA 416

Query: 78  LQLLRRAEDDELVQLKPDVVIYS 100
             LL+  E        P+ V+YS
Sbjct: 417 CALLKEMESR---GCNPNFVVYS 436


>AT1G13040.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr1:4447647-4449200 FORWARD
           LENGTH=517
          Length = 517

 Score = 52.8 bits (125), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 44/80 (55%)

Query: 1   MKHYSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFT 60
           +K +  + +L   M+  G +P+    N+ +D  C   ++ FA   F  + +RG +PDV +
Sbjct: 92  VKKFDLIDALLSDMETLGFIPDIWAFNVYLDLLCRENKVGFAVQTFFCMVQRGREPDVVS 151

Query: 61  FATLINGFCQMGQIRPALQL 80
           +  LING  + G++  A+++
Sbjct: 152 YTILINGLFRAGKVTDAVEI 171


>AT2G31400.1 | Symbols: GUN1 | genomes uncoupled 1 |
           chr2:13387201-13390550 REVERSE LENGTH=918
          Length = 918

 Score = 52.4 bits (124), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 29/88 (32%), Positives = 50/88 (56%), Gaps = 3/88 (3%)

Query: 13  QMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMG 72
           QM +K IMPN V+ + +ID +   G+ + A ++F  +R  G   D  ++ TL++ + ++G
Sbjct: 399 QMPVKRIMPNVVSYSTVIDGFAKAGRFDEALNLFGEMRYLGIALDRVSYNTLLSIYTKVG 458

Query: 73  QIRPALQLLRRAEDDELVQLKPDVVIYS 100
           +   AL +LR       V +K DVV Y+
Sbjct: 459 RSEEALDILREMAS---VGIKKDVVTYN 483



 Score = 50.4 bits (119), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/99 (28%), Positives = 51/99 (51%), Gaps = 7/99 (7%)

Query: 4   YSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFAT 63
           Y  V  +  +M+ + ++PN +T + LID Y   G    A  +F   +  G + DV  ++ 
Sbjct: 495 YDEVKKVFTEMKREHVLPNLLTYSTLIDGYSKGGLYKEAMEIFREFKSAGLRADVVLYSA 554

Query: 64  LINGFCQMGQIRPALQLLRRAEDDELVQ--LKPDVVIYS 100
           LI+  C+ G +  A+ L+     DE+ +  + P+VV Y+
Sbjct: 555 LIDALCKNGLVGSAVSLI-----DEMTKEGISPNVVTYN 588



 Score = 46.6 bits (109), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 3/97 (3%)

Query: 4   YSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFAT 63
           +  V     +MQ  G+ P+ +T N L+      G    A ++F  +  R  + DVF++ T
Sbjct: 320 FKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGGLWEAARNLFDEMTNRRIEQDVFSYNT 379

Query: 64  LINGFCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           L++  C+ GQ+  A ++L +     + ++ P+VV YS
Sbjct: 380 LLDAICKGGQMDLAFEILAQM---PVKRIMPNVVSYS 413


>AT5G61400.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:24681550-24683514 FORWARD
           LENGTH=654
          Length = 654

 Score = 52.0 bits (123), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 3/96 (3%)

Query: 4   YSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFAT 63
           YS    L  +M   GI PN     I I   C   ++  A  +F  ++K G  P+++T++ 
Sbjct: 215 YSKKEKLLDEMTSLGIKPNVYIYTIYILDLCRDNKMEEAEKMFELMKKHGVLPNLYTYSA 274

Query: 64  LINGFCQMGQIRPALQLLRRAEDDELVQLKPDVVIY 99
           +I+G+C+ G +R A  L +     EL+   P+VV++
Sbjct: 275 MIDGYCKTGNVRQAYGLYKEILVAELL---PNVVVF 307



 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 3/91 (3%)

Query: 10  LSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFC 69
           L  +M+ + I P+  T N LI  YC    +  A  + + +   G +P++ TF+TLI+G+C
Sbjct: 396 LFQKMKNERIFPSSATYNSLIHGYCKEYNMEQALDLCSEMTASGVEPNIITFSTLIDGYC 455

Query: 70  QMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
            +  I+ A+ L        +V   PDVV Y+
Sbjct: 456 NVRDIKAAMGLYFEMTIKGIV---PDVVTYT 483



 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 3/91 (3%)

Query: 10  LSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFC 69
           L  ++ +  ++PN V    L+D +C   ++  A S+F  + K G  P+++ +  LI+G C
Sbjct: 291 LYKEILVAELLPNVVVFGTLVDGFCKARELVTARSLFVHMVKFGVDPNLYVYNCLIHGHC 350

Query: 70  QMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           + G +  A+ LL   E    + L PDV  Y+
Sbjct: 351 KSGNMLEAVGLLSEMES---LNLSPDVFTYT 378



 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 37/67 (55%)

Query: 14  MQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQ 73
           M+  G++PN  T + +ID YC  G +  A+ ++  I      P+V  F TL++GFC+  +
Sbjct: 260 MKKHGVLPNLYTYSAMIDGYCKTGNVRQAYGLYKEILVAELLPNVVVFGTLVDGFCKARE 319

Query: 74  IRPALQL 80
           +  A  L
Sbjct: 320 LVTARSL 326



 Score = 49.7 bits (117), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 40/74 (54%)

Query: 7   VISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLIN 66
            + L  +M   G+ PN +T + LID YC++  I  A  ++  +  +G  PDV T+  LI+
Sbjct: 428 ALDLCSEMTASGVEPNIITFSTLIDGYCNVRDIKAAMGLYFEMTIKGIVPDVVTYTALID 487

Query: 67  GFCQMGQIRPALQL 80
              +   ++ AL+L
Sbjct: 488 AHFKEANMKEALRL 501



 Score = 47.8 bits (112), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 41/84 (48%)

Query: 6   TVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLI 65
           T  SL   M   G+ PN    N LI  +C  G +  A  + + +      PDVFT+  LI
Sbjct: 322 TARSLFVHMVKFGVDPNLYVYNCLIHGHCKSGNMLEAVGLLSEMESLNLSPDVFTYTILI 381

Query: 66  NGFCQMGQIRPALQLLRRAEDDEL 89
           NG C   Q+  A +L ++ +++ +
Sbjct: 382 NGLCIEDQVAEANRLFQKMKNERI 405



 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 41/73 (56%)

Query: 6   TVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLI 65
             + L  +M +KGI+P+ VT   LID +     +  A  +++ + + G  P+  TFA L+
Sbjct: 462 AAMGLYFEMTIKGIVPDVVTYTALIDAHFKEANMKEALRLYSDMLEAGIHPNDHTFACLV 521

Query: 66  NGFCQMGQIRPAL 78
           +GF + G++  A+
Sbjct: 522 DGFWKEGRLSVAI 534


>AT2G15630.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr2:6814521-6816404 FORWARD
           LENGTH=627
          Length = 627

 Score = 52.0 bits (123), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 3/89 (3%)

Query: 10  LSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFC 69
           L  +++ KGI+ + VT NILI+ YC  G    AF++   +   G QP  FT+ +LI   C
Sbjct: 384 LIREIREKGIVLDSVTYNILINGYCQHGDAKKAFALHDEMMTDGIQPTQFTYTSLIYVLC 443

Query: 70  QMGQIRPALQLLRRAEDDELVQLKPDVVI 98
           +  + R A +L  +        +KPD+V+
Sbjct: 444 RKNKTREADELFEKVVGK---GMKPDLVM 469



 Score = 48.5 bits (114), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 11/88 (12%)

Query: 17  KGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQIRP 76
           KG+ P+ V  N L+D +C +G ++ AFS+   +      PD  T+  L+ G C  G+   
Sbjct: 461 KGMKPDLVMMNTLMDGHCAIGNMDRAFSLLKEMDMMSINPDDVTYNCLMRGLCGEGKFEE 520

Query: 77  ALQLL----RRAEDDELVQLKPDVVIYS 100
           A +L+    RR        +KPD + Y+
Sbjct: 521 ARELMGEMKRRG-------IKPDHISYN 541



 Score = 47.0 bits (110), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 3/92 (3%)

Query: 9   SLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGF 68
           +L  +M   GI P   T   LI   C   +   A  +F  +  +G +PD+    TL++G 
Sbjct: 418 ALHDEMMTDGIQPTQFTYTSLIYVLCRKNKTREADELFEKVVGKGMKPDLVMMNTLMDGH 477

Query: 69  CQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           C +G +  A  LL+     +++ + PD V Y+
Sbjct: 478 CAIGNMDRAFSLLKEM---DMMSINPDDVTYN 506



 Score = 46.6 bits (109), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 49/87 (56%), Gaps = 6/87 (6%)

Query: 14  MQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQ 73
           M++ GI P  VT N L+  +   G+I  A  + + ++ +G+QPD+ T+  +++  C  G+
Sbjct: 251 MEVFGIKPTIVTYNTLVQGFSLRGRIEGARLIISEMKSKGFQPDMQTYNPILSWMCNEGR 310

Query: 74  IRPALQLLRRAEDDELVQLKPDVVIYS 100
              A ++LR  ++  LV   PD V Y+
Sbjct: 311 ---ASEVLREMKEIGLV---PDSVSYN 331


>AT1G74900.1 | Symbols: OTP43 | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:28133933-28135381 FORWARD
           LENGTH=453
          Length = 453

 Score = 51.6 bits (122), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 29/102 (28%), Positives = 53/102 (51%), Gaps = 7/102 (6%)

Query: 1   MKHYSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFT 60
           +K     + +  +M  +GI PN  T N ++  +   GQI  A+  F  ++KR  + DV T
Sbjct: 208 IKRTPKALEVLKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEIDVVT 267

Query: 61  FATLINGFCQMGQIRPALQLLRRAEDDELVQ--LKPDVVIYS 100
           + T+++GF   G+I+ A  +      DE+++  + P V  Y+
Sbjct: 268 YTTVVHGFGVAGEIKRARNVF-----DEMIREGVLPSVATYN 304



 Score = 50.8 bits (120), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 41/75 (54%)

Query: 13  QMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMG 72
           +M  +G++P+  T N +I   C    +  A  +F  + +RGY+P+V T+  LI G    G
Sbjct: 290 EMIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAG 349

Query: 73  QIRPALQLLRRAEDD 87
           +     +L++R E++
Sbjct: 350 EFSRGEELMQRMENE 364


>AT2G36240.1 | Symbols:  | pentatricopeptide (PPR) repeat-containing
           protein | chr2:15195663-15197156 FORWARD LENGTH=497
          Length = 497

 Score = 51.6 bits (122), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 37/60 (61%)

Query: 21  PNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQIRPALQL 80
           P+  T NILI+ YC   + + A  +F  ++++G +P+V +F TLI GF   G+I   +++
Sbjct: 226 PDVCTFNILINGYCRSSKFDLALDLFREMKEKGCEPNVVSFNTLIRGFLSSGKIEEGVKM 285


>AT5G55740.1 | Symbols: CRR21 | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:22561941-22564433 REVERSE
           LENGTH=830
          Length = 830

 Score = 51.6 bits (122), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/82 (30%), Positives = 47/82 (57%)

Query: 8   ISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLING 67
           + L + MQL+G+ PN +T N++I      GQ++ A  +F  ++  G  P++ ++ T++NG
Sbjct: 461 LRLFYGMQLEGVPPNVITWNLIILSLLRNGQVDEAKDMFLQMQSSGIIPNLISWTTMMNG 520

Query: 68  FCQMGQIRPALQLLRRAEDDEL 89
             Q G    A+  LR+ ++  L
Sbjct: 521 MVQNGCSEEAILFLRKMQESGL 542


>AT2G17670.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr2:7674420-7675811 FORWARD
           LENGTH=463
          Length = 463

 Score = 51.6 bits (122), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/81 (32%), Positives = 43/81 (53%)

Query: 5   STVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATL 64
           S  + +  +M+ +G+ P+ +T N LI      G++  A     T+   GY+PD  T+ +L
Sbjct: 282 SEAVGVYKKMKEEGVEPDQITYNTLIFGLSKAGRVEEARMYLKTMVDAGYEPDTATYTSL 341

Query: 65  INGFCQMGQIRPALQLLRRAE 85
           +NG C+ G+   AL LL   E
Sbjct: 342 MNGMCRKGESLGALSLLEEME 362


>AT4G26680.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:13454853-13456418 FORWARD
           LENGTH=521
          Length = 521

 Score = 51.2 bits (121), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 3/96 (3%)

Query: 5   STVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATL 64
           S+ + L + M   G+ PN VT N LI  +C   ++  A  VF  ++     P+  T+ TL
Sbjct: 290 SSALKLKNMMGKSGLQPNVVTFNTLIHGFCRAMKLQEASKVFGEMKAVNVAPNTVTYNTL 349

Query: 65  INGFCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           ING+ Q G    A +     ED     ++ D++ Y+
Sbjct: 350 INGYSQQGDHEMAFRFY---EDMVCNGIQRDILTYN 382



 Score = 49.7 bits (117), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 3/93 (3%)

Query: 8   ISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLING 67
           I L   M+  G     V+ N LI  +C  G ++ A  +   + K G QP+V TF TLI+G
Sbjct: 258 IELLQDMERLGFRATDVSYNTLIAGHCEKGLLSSALKLKNMMGKSGLQPNVVTFNTLIHG 317

Query: 68  FCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           FC+  +++ A ++       + V + P+ V Y+
Sbjct: 318 FCRAMKLQEASKVFGEM---KAVNVAPNTVTYN 347


>AT4G26680.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:13454853-13456418 FORWARD
           LENGTH=521
          Length = 521

 Score = 51.2 bits (121), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 3/96 (3%)

Query: 5   STVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATL 64
           S+ + L + M   G+ PN VT N LI  +C   ++  A  VF  ++     P+  T+ TL
Sbjct: 290 SSALKLKNMMGKSGLQPNVVTFNTLIHGFCRAMKLQEASKVFGEMKAVNVAPNTVTYNTL 349

Query: 65  INGFCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           ING+ Q G    A +     ED     ++ D++ Y+
Sbjct: 350 INGYSQQGDHEMAFRFY---EDMVCNGIQRDILTYN 382



 Score = 49.7 bits (117), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 48/93 (51%), Gaps = 3/93 (3%)

Query: 8   ISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLING 67
           I L   M+  G     V+ N LI  +C  G ++ A  +   + K G QP+V TF TLI+G
Sbjct: 258 IELLQDMERLGFRATDVSYNTLIAGHCEKGLLSSALKLKNMMGKSGLQPNVVTFNTLIHG 317

Query: 68  FCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           FC+  +++ A ++       + V + P+ V Y+
Sbjct: 318 FCRAMKLQEASKVFGEM---KAVNVAPNTVTYN 347


>AT5G12100.1 | Symbols:  | pentatricopeptide (PPR) repeat-containing
           protein | chr5:3911388-3913838 FORWARD LENGTH=816
          Length = 816

 Score = 51.2 bits (121), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 3/90 (3%)

Query: 10  LSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFC 69
            S +M  KGI  N VT N LID     G+++ A  +   I ++G +PDVFT+ +LI+G+ 
Sbjct: 551 FSKEMLKKGIELNLVTYNTLIDGLSMTGKLSEAEDLLLEISRKGLKPDVFTYNSLISGYG 610

Query: 70  QMGQIRPALQLLRRAEDDELVQLKPDVVIY 99
             G ++  + L    E+ +   +KP +  Y
Sbjct: 611 FAGNVQRCIALY---EEMKRSGIKPTLKTY 637



 Score = 50.8 bits (120), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 49/89 (55%), Gaps = 3/89 (3%)

Query: 12  HQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQM 71
           ++M+LKG+ P+  T NILI  Y    + +  F +   +   G  P+V ++ TLIN  C+ 
Sbjct: 448 NKMKLKGVSPSVETYNILIGGYGRKYEFDKCFDILKEMEDNGTMPNVVSYGTLINCLCKG 507

Query: 72  GQIRPALQLLRRAEDDELVQLKPDVVIYS 100
            ++  A Q+++R  +D  V   P V IY+
Sbjct: 508 SKLLEA-QIVKRDMEDRGVS--PKVRIYN 533



 Score = 50.4 bits (119), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 3/91 (3%)

Query: 10  LSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFC 69
           L  +M  + ++P+ +T N LID YC  G    +F V   ++    +P + TF TL+ G  
Sbjct: 236 LFDEMLARRLLPSLITYNTLIDGYCKAGNPEKSFKVRERMKADHIEPSLITFNTLLKGLF 295

Query: 70  QMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           + G +  A  +L+  +D   V   PD   +S
Sbjct: 296 KAGMVEDAENVLKEMKDLGFV---PDAFTFS 323



 Score = 48.5 bits (114), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 3/84 (3%)

Query: 17  KGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQIRP 76
           KG++PN V  N +ID YC  G +  A      + K+G +PD   +  LI  FC++G++  
Sbjct: 383 KGLVPNEVIYNTMIDGYCRKGDLVGARMKIEAMEKQGMKPDHLAYNCLIRRFCELGEMEN 442

Query: 77  ALQLLRRAEDDELVQLKPDVVIYS 100
           A + + +    +L  + P V  Y+
Sbjct: 443 AEKEVNKM---KLKGVSPSVETYN 463



 Score = 48.5 bits (114), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 3/91 (3%)

Query: 10  LSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFC 69
           +   M+ +G+ P     N+LID  C  G+I  AF     + K+G + ++ T+ TLI+G  
Sbjct: 516 VKRDMEDRGVSPKVRIYNMLIDGCCSKGKIEDAFRFSKEMLKKGIELNLVTYNTLIDGLS 575

Query: 70  QMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
             G++  A  LL          LKPDV  Y+
Sbjct: 576 MTGKLSEAEDLLLEISRK---GLKPDVFTYN 603


>AT3G14580.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:4903012-4904229 FORWARD
           LENGTH=405
          Length = 405

 Score = 51.2 bits (121), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 3/74 (4%)

Query: 27  NILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQIRPALQLLRRAED 86
           NILI   C  G +  A  +     ++  +P+V TF+ LI GFC  G+   A +LL R E 
Sbjct: 206 NILIKGLCESGNLEAALQLLDEFPQQKSRPNVMTFSPLIRGFCNKGKFEEAFKLLERMEK 265

Query: 87  DELVQLKPDVVIYS 100
           +   +++PD + ++
Sbjct: 266 E---RIEPDTITFN 276


>AT5G62370.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:25041901-25044849 REVERSE
           LENGTH=982
          Length = 982

 Score = 51.2 bits (121), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 3/88 (3%)

Query: 13  QMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMG 72
           +M   GI P+ +   I+I+ Y   G+I+ A  +   + K   +P  FT+  LI+GF +MG
Sbjct: 607 KMLESGIQPDEIAYMIMINTYARNGRIDEANELVEEVVKHFLRPSSFTYTVLISGFVKMG 666

Query: 73  QIRPALQLLRRAEDDELVQLKPDVVIYS 100
            +    Q L +  +D    L P+VV+Y+
Sbjct: 667 MMEKGCQYLDKMLED---GLSPNVVLYT 691



 Score = 49.3 bits (116), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 6/84 (7%)

Query: 17  KGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQIRP 76
           K I+PN    N +I  YC  G+++ A++   +++K G  P++ T+  L+    + G I  
Sbjct: 788 KSIIPNLYLHNTIITGYCAAGRLDEAYNHLESMQKEGIVPNLVTYTILMKSHIEAGDIES 847

Query: 77  ALQLLRRAEDDELVQLKPDVVIYS 100
           A+ L       E    +PD V+YS
Sbjct: 848 AIDLF------EGTNCEPDQVMYS 865


>AT5G04810.1 | Symbols:  | pentatricopeptide (PPR) repeat-containing
           protein | chr5:1390049-1393760 FORWARD LENGTH=952
          Length = 952

 Score = 51.2 bits (121), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 45/81 (55%)

Query: 5   STVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATL 64
           S  + +S  M+ +G+  N  T +++I+ +  L     AF+VF  + K G +PDV  +  +
Sbjct: 501 SKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFAVFEDMVKEGMKPDVILYNNI 560

Query: 65  INGFCQMGQIRPALQLLRRAE 85
           I+ FC MG +  A+Q ++  +
Sbjct: 561 ISAFCGMGNMDRAIQTVKEMQ 581



 Score = 46.6 bits (109), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 50/95 (52%), Gaps = 3/95 (3%)

Query: 6   TVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLI 65
           + ++++ +M  + I  N    NILID +   G +  A  +   ++K G +PD+ T+ + I
Sbjct: 712 SALAVTKEMSARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTYTSFI 771

Query: 66  NGFCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           +   + G +  A Q +   E+ E + +KP++  Y+
Sbjct: 772 SACSKAGDMNRATQTI---EEMEALGVKPNIKTYT 803



 Score = 46.6 bits (109), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 3/83 (3%)

Query: 18  GIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQIRPA 77
           G  P  VT   LI+ Y  +G+I+ A  V   +++ G + ++ T++ +INGF ++     A
Sbjct: 479 GFTPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANA 538

Query: 78  LQLLRRAEDDELVQLKPDVVIYS 100
             +    ED     +KPDV++Y+
Sbjct: 539 FAVF---EDMVKEGMKPDVILYN 558


>AT4G20090.1 | Symbols: EMB1025 | Pentatricopeptide repeat (PPR)
           superfamily protein | chr4:10868400-10870382 REVERSE
           LENGTH=660
          Length = 660

 Score = 50.8 bits (120), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 46/88 (52%)

Query: 13  QMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMG 72
           +M   G   N    ++LID  C +G++  A  V++ +   G +PD   ++++I G C +G
Sbjct: 457 EMDKTGCSRNKFCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSIIKGLCGIG 516

Query: 73  QIRPALQLLRRAEDDELVQLKPDVVIYS 100
            +  AL+L       E  + +PDVV Y+
Sbjct: 517 SMDAALKLYHEMLCQEEPKSQPDVVTYN 544



 Score = 47.4 bits (111), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 42/78 (53%)

Query: 8   ISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLING 67
           +SL  +M  KG  PN V  ++L+D  C  G+ N A  +   +   G  P+ +T+++L+ G
Sbjct: 382 MSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILNRMIASGCLPNAYTYSSLMKG 441

Query: 68  FCQMGQIRPALQLLRRAE 85
           F + G    A+Q+ +  +
Sbjct: 442 FFKTGLCEEAVQVWKEMD 459



 Score = 47.0 bits (110), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 3/92 (3%)

Query: 8   ISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLING 67
           + L  +MQ +G  P+ V  N+LID  C  G +     +   +  +G  P+  T+ TLI+G
Sbjct: 242 VLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHG 301

Query: 68  FCQMGQIRPALQLLRRAEDDELVQLKPDVVIY 99
            C  G++  A+ LL R    + +   P+ V Y
Sbjct: 302 LCLKGKLDKAVSLLERMVSSKCI---PNDVTY 330



 Score = 46.6 bits (109), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/100 (29%), Positives = 52/100 (52%), Gaps = 6/100 (6%)

Query: 1   MKHYSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFT 60
           ++ Y  V++ +  M    I PN ++ N++I   C L  ++ A  VF  + +R   PD +T
Sbjct: 168 LEFYDYVVNSNMNMN---ISPNGLSFNLVIKALCKLRFVDRAIEVFRGMPERKCLPDGYT 224

Query: 61  FATLINGFCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           + TL++G C+  +I  A+ LL   + +      P  VIY+
Sbjct: 225 YCTLMDGLCKEERIDEAVLLLDEMQSE---GCSPSPVIYN 261


>AT1G19720.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr1:6819926-6822610 REVERSE
           LENGTH=894
          Length = 894

 Score = 50.8 bits (120), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/80 (32%), Positives = 40/80 (50%)

Query: 4   YSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFAT 63
           +   + L  +M+ +GI P  VT NILI  Y  LG+ + A  +   +   G   DVFT+  
Sbjct: 263 HEEAVELVKEMEKEGISPGLVTWNILIGGYNQLGKCDAAMDLMQKMETFGITADVFTWTA 322

Query: 64  LINGFCQMGQIRPALQLLRR 83
           +I+G    G    AL + R+
Sbjct: 323 MISGLIHNGMRYQALDMFRK 342



 Score = 49.7 bits (117), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 50/90 (55%), Gaps = 8/90 (8%)

Query: 12  HQMQLK-GIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQ 70
           H + +K G + + +  N L+D Y   G++  A  VF +++ +    DV+T+ ++I G+CQ
Sbjct: 375 HSIAVKMGFIDDVLVGNSLVDMYSKCGKLEDARKVFDSVKNK----DVYTWNSMITGYCQ 430

Query: 71  MGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
            G    A +L  R +D     L+P+++ ++
Sbjct: 431 AGYCGKAYELFTRMQD---ANLRPNIITWN 457


>AT5G16420.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr5:5368034-5369641 FORWARD
           LENGTH=535
          Length = 535

 Score = 50.8 bits (120), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 3/82 (3%)

Query: 18  GIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQIRPA 77
           G++PN VT   ++  Y   G +  A  V   +  RG+ PD  T+  L++G+C++G+   A
Sbjct: 221 GLVPNLVTYTTILGGYVARGDMESAKRVLEEMLDRGWYPDATTYTVLMDGYCKLGRFSEA 280

Query: 78  LQLLRRAEDDELVQLKPDVVIY 99
             ++   E +E   ++P+ V Y
Sbjct: 281 ATVMDDMEKNE---IEPNEVTY 299



 Score = 45.1 bits (105), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 3/83 (3%)

Query: 18  GIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQIRPA 77
           GI PN  T N+L+   C    I  A+ V   I   G  P++ T+ T++ G+   G +  A
Sbjct: 186 GITPNIFTCNLLVKALCKKNDIESAYKVLDEIPSMGLVPNLVTYTTILGGYVARGDMESA 245

Query: 78  LQLLRRAEDDELVQLKPDVVIYS 100
            ++L    D       PD   Y+
Sbjct: 246 KRVLEEMLDRGWY---PDATTYT 265


>AT3G60050.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:22180231-22181652 REVERSE
           LENGTH=473
          Length = 473

 Score = 50.8 bits (120), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 3/88 (3%)

Query: 13  QMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMG 72
           +M   G  P+ V   ++I  Y   G+++ A  +F  +  +G  P+VFT+ ++I G C  G
Sbjct: 349 EMVKAGCRPDVVCYTVMITGYVVSGELDKAKEMFREMTVKGQLPNVFTYNSMIRGLCMAG 408

Query: 73  QIRPALQLLRRAEDDELVQLKPDVVIYS 100
           + R A  LL+  E        P+ V+YS
Sbjct: 409 EFREACWLLKEMESR---GCNPNFVVYS 433


>AT2G19280.2 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr2:8362672-8364753 FORWARD
           LENGTH=693
          Length = 693

 Score = 50.4 bits (119), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 3/94 (3%)

Query: 7   VISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLIN 66
           V  L  +M+  GI P+  T NILI      G I+ A  + + + +RG+ P    F  +I 
Sbjct: 497 VFELIDEMRSAGISPDVATYNILIHSMVVRGYIDEANEIISELIRRGFVPSTLAFTDVIG 556

Query: 67  GFCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           GF + G  + A  L     D   +++KPDVV  S
Sbjct: 557 GFSKRGDFQEAFILWFYMAD---LRMKPDVVTCS 587



 Score = 48.9 bits (115), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 3/83 (3%)

Query: 18  GIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQIRPA 77
           G++P+ V    +ID YC+LG+ + AF  F  + K G  P + T   LI    + G I  A
Sbjct: 403 GLLPDCVCYTTMIDGYCNLGRTDKAFQYFGALLKSGNPPSLTTSTILIGACSRFGSISDA 462

Query: 78  LQLLRRAEDDELVQLKPDVVIYS 100
             + R  + +    LK DVV Y+
Sbjct: 463 ESVFRNMKTE---GLKLDVVTYN 482



 Score = 46.6 bits (109), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 35/61 (57%)

Query: 21  PNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQIRPALQL 80
           P+ VT + L+  YC   ++  A  +F  +   G +PDV  + TLI+G+C +G I  A +L
Sbjct: 581 PDVVTCSALLHGYCKAQRMEKAIVLFNKLLDAGLKPDVVLYNTLIHGYCSVGDIEKACEL 640

Query: 81  L 81
           +
Sbjct: 641 I 641



 Score = 45.8 bits (107), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 47/87 (54%), Gaps = 6/87 (6%)

Query: 14  MQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQ 73
           M+  GI P+ V   + ID  C  G +  A SV   ++  G   D  + +++I+GFC++G+
Sbjct: 297 MKHYGIRPDIVAFTVFIDKLCKAGFLKEATSVLFKLKLFGISQDSVSVSSVIDGFCKVGK 356

Query: 74  IRPALQLLRRAEDDELVQLKPDVVIYS 100
              A++L+         +L+P++ +YS
Sbjct: 357 PEEAIKLIHS------FRLRPNIFVYS 377


>AT2G19280.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr2:8362672-8364753 FORWARD
           LENGTH=693
          Length = 693

 Score = 50.4 bits (119), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 3/94 (3%)

Query: 7   VISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLIN 66
           V  L  +M+  GI P+  T NILI      G I+ A  + + + +RG+ P    F  +I 
Sbjct: 497 VFELIDEMRSAGISPDVATYNILIHSMVVRGYIDEANEIISELIRRGFVPSTLAFTDVIG 556

Query: 67  GFCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           GF + G  + A  L     D   +++KPDVV  S
Sbjct: 557 GFSKRGDFQEAFILWFYMAD---LRMKPDVVTCS 587



 Score = 48.9 bits (115), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 3/83 (3%)

Query: 18  GIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQIRPA 77
           G++P+ V    +ID YC+LG+ + AF  F  + K G  P + T   LI    + G I  A
Sbjct: 403 GLLPDCVCYTTMIDGYCNLGRTDKAFQYFGALLKSGNPPSLTTSTILIGACSRFGSISDA 462

Query: 78  LQLLRRAEDDELVQLKPDVVIYS 100
             + R  + +    LK DVV Y+
Sbjct: 463 ESVFRNMKTE---GLKLDVVTYN 482



 Score = 46.6 bits (109), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 35/61 (57%)

Query: 21  PNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQIRPALQL 80
           P+ VT + L+  YC   ++  A  +F  +   G +PDV  + TLI+G+C +G I  A +L
Sbjct: 581 PDVVTCSALLHGYCKAQRMEKAIVLFNKLLDAGLKPDVVLYNTLIHGYCSVGDIEKACEL 640

Query: 81  L 81
           +
Sbjct: 641 I 641



 Score = 45.8 bits (107), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 47/87 (54%), Gaps = 6/87 (6%)

Query: 14  MQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQ 73
           M+  GI P+ V   + ID  C  G +  A SV   ++  G   D  + +++I+GFC++G+
Sbjct: 297 MKHYGIRPDIVAFTVFIDKLCKAGFLKEATSVLFKLKLFGISQDSVSVSSVIDGFCKVGK 356

Query: 74  IRPALQLLRRAEDDELVQLKPDVVIYS 100
              A++L+         +L+P++ +YS
Sbjct: 357 PEEAIKLIHS------FRLRPNIFVYS 377


>AT1G18900.3 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:6529778-6532541 FORWARD
           LENGTH=886
          Length = 886

 Score = 50.1 bits (118), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 3/99 (3%)

Query: 2   KHYSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTF 61
           K +  +  L  +M   G  PN VT N LI  Y     +N A +VF  +++ G +PD  T+
Sbjct: 378 KQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTY 437

Query: 62  ATLINGFCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
            TLI+   + G +  A+ + +R +      L PD   YS
Sbjct: 438 CTLIDIHAKAGFLDIAMDMYQRMQAG---GLSPDTFTYS 473


>AT1G18900.2 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:6529778-6532360 FORWARD
           LENGTH=860
          Length = 860

 Score = 50.1 bits (118), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 3/99 (3%)

Query: 2   KHYSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTF 61
           K +  +  L  +M   G  PN VT N LI  Y     +N A +VF  +++ G +PD  T+
Sbjct: 378 KQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTY 437

Query: 62  ATLINGFCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
            TLI+   + G +  A+ + +R +      L PD   YS
Sbjct: 438 CTLIDIHAKAGFLDIAMDMYQRMQAG---GLSPDTFTYS 473


>AT1G18900.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:6529778-6532360 FORWARD
           LENGTH=860
          Length = 860

 Score = 50.1 bits (118), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 3/99 (3%)

Query: 2   KHYSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTF 61
           K +  +  L  +M   G  PN VT N LI  Y     +N A +VF  +++ G +PD  T+
Sbjct: 378 KQFGAINKLLDEMVRDGCQPNTVTYNRLIHSYGRANYLNEAMNVFNQMQEAGCKPDRVTY 437

Query: 62  ATLINGFCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
            TLI+   + G +  A+ + +R +      L PD   YS
Sbjct: 438 CTLIDIHAKAGFLDIAMDMYQRMQAG---GLSPDTFTYS 473


>AT5G08310.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:2672756-2675254 REVERSE
           LENGTH=832
          Length = 832

 Score = 50.1 bits (118), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 2/76 (2%)

Query: 10  LSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFC 69
           L ++M  KG+ P   T N +ID +C  G+I+   S    + +    PDV T+ +LI+G C
Sbjct: 636 LFNEMVSKGLKPTVATYNSMIDGWCKEGEIDRGLSCIVRMYEDEKNPDVITYTSLIHGLC 695

Query: 70  QMGQIRPALQLLRRAE 85
             G  RP+  + R  E
Sbjct: 696 ASG--RPSEAIFRWNE 709


>AT2G18940.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr2:8203873-8206341 REVERSE
           LENGTH=822
          Length = 822

 Score = 50.1 bits (118), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 39/64 (60%)

Query: 18  GIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQIRPA 77
           G+ P+ VT N L+D Y   G+   A  +  T+ K   +PD+ ++ T+I GFC+ G ++ A
Sbjct: 661 GLSPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQLKPDLVSYNTVIKGFCRRGLMQEA 720

Query: 78  LQLL 81
           +++L
Sbjct: 721 VRML 724


>AT1G30290.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr1:10670320-10672740 REVERSE
           LENGTH=806
          Length = 806

 Score = 50.1 bits (118), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 2/88 (2%)

Query: 13  QMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMG 72
           +MQ+ GI+PN VT N +I  YC L ++  A  +   +  +G  PD  ++ T++   C+  
Sbjct: 302 RMQVVGIVPNVVTYNCMIRGYCDLHRVEEAIELLEDMHSKGCLPDKVSYYTIMGYLCKEK 361

Query: 73  QIRPALQLLRRAEDDELVQLKPDVVIYS 100
           +I     L+++   +    L PD V Y+
Sbjct: 362 RIVEVRDLMKKMAKEH--GLVPDQVTYN 387



 Score = 47.4 bits (111), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 50/92 (54%), Gaps = 4/92 (4%)

Query: 10  LSHQMQLKG-IMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGF 68
           L ++M  KG   P+ VT   +++ +C LG+++ A  +   +   G++P+  ++  L+NG 
Sbjct: 440 LINEMLSKGHCPPDVVTYTAVVNGFCRLGEVDKAKKLLQVMHTHGHKPNTVSYTALLNGM 499

Query: 69  CQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           C+ G+   A +++  +E+       P+ + YS
Sbjct: 500 CRTGKSLEAREMMNMSEEH---WWSPNSITYS 528



 Score = 47.0 bits (110), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 3/96 (3%)

Query: 5   STVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATL 64
           S    +  +M LKG  P  V  N+L+   C  G+ + A         +G   +V  F T+
Sbjct: 541 SEACDVVREMVLKGFFPGPVEINLLLQSLCRDGRTHEARKFMEECLNKGCAINVVNFTTV 600

Query: 65  INGFCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           I+GFCQ  ++  AL +L   +D  L+    DV  Y+
Sbjct: 601 IHGFCQNDELDAALSVL---DDMYLINKHADVFTYT 633


>AT1G16830.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:5760793-5762619 FORWARD
           LENGTH=608
          Length = 608

 Score = 49.7 bits (117), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 41/68 (60%), Gaps = 3/68 (4%)

Query: 6   TVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLI 65
           TV+S   ++Q +G+ P+ V  N++I  Y  LG+   A  VF ++ KR   PD +TFA+++
Sbjct: 303 TVLS---KVQSEGLAPDIVLCNLMIHTYTRLGRFEEARKVFTSLEKRKLVPDQYTFASIL 359

Query: 66  NGFCQMGQ 73
           +  C  G+
Sbjct: 360 SSLCLSGK 367


>AT1G77340.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:29068620-29069828 REVERSE
           LENGTH=402
          Length = 402

 Score = 49.7 bits (117), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 2/81 (2%)

Query: 10  LSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFC 69
           L H ++  G+MPN +T N LI  +C    ++ A  + + + ++   PD+ T+ TLI G C
Sbjct: 318 LEHMLE-NGLMPNVITYNALIKGFCK-KNVHKAMGLLSKMLEQNLVPDLITYNTLIAGQC 375

Query: 70  QMGQIRPALQLLRRAEDDELV 90
             G +  A +LL   E+  LV
Sbjct: 376 SSGNLDSAYRLLSLMEESGLV 396



 Score = 48.1 bits (113), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 48/96 (50%), Gaps = 4/96 (4%)

Query: 5   STVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATL 64
           S  ++L  QM   GI P+     +LI  +C    ++ A  +   + + G  P+V T+  L
Sbjct: 277 SEAMNLFKQMSESGIKPDDCMYTVLIQSFCSGDTLDEASGLLEHMLENGLMPNVITYNAL 336

Query: 65  INGFCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           I GFC+   +  A+ LL +  +  LV   PD++ Y+
Sbjct: 337 IKGFCK-KNVHKAMGLLSKMLEQNLV---PDLITYN 368



 Score = 47.8 bits (112), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 3/99 (3%)

Query: 2   KHYSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTF 61
           K     +SL  +M+     PN  T  +LID  C  GQ + A ++F  + + G +PD   +
Sbjct: 239 KKIDEALSLLVKMKDDNCCPNVRTYTVLIDALCGSGQKSEAMNLFKQMSESGIKPDDCMY 298

Query: 62  ATLINGFCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
             LI  FC    +  A  LL    ++ L+   P+V+ Y+
Sbjct: 299 TVLIQSFCSGDTLDEASGLLEHMLENGLM---PNVITYN 334


>AT5G06400.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:1955959-1959051 FORWARD
           LENGTH=1030
          Length = 1030

 Score = 49.7 bits (117), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 42/85 (49%)

Query: 2   KHYSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTF 61
           K    V+    +M+ +   P+ VT   +I  Y  LG++  A++ F  + +RG  PD  T+
Sbjct: 903 KQLEKVLETCQKMEGESCEPSVVTYTAMICGYMSLGKVEEAWNAFRNMEERGTSPDFKTY 962

Query: 62  ATLINGFCQMGQIRPALQLLRRAED 86
           +  IN  CQ  +   AL+LL    D
Sbjct: 963 SKFINCLCQACKSEDALKLLSEMLD 987


>AT2G39230.1 | Symbols: LOJ | LATERAL ORGAN JUNCTION |
           chr2:16381647-16384250 FORWARD LENGTH=867
          Length = 867

 Score = 49.3 bits (116), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 38/60 (63%)

Query: 9   SLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGF 68
           S    M+ KGI PN V  N ++  +C +  ++ A S+F+ + ++G +P+ FT++ LI+GF
Sbjct: 470 SFLKMMEQKGIEPNVVFYNNMMLAHCRMKNMDLARSIFSEMLEKGLEPNNFTYSILIDGF 529


>AT1G74750.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:28086800-28089367 FORWARD
           LENGTH=855
          Length = 855

 Score = 48.9 bits (115), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 3/99 (3%)

Query: 2   KHYSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTF 61
           K +  +  L  +M   G  PN VT N LI  Y     +  A +VF  +++ G +PD  T+
Sbjct: 373 KQFGEINKLLDEMVRDGCKPNTVTYNRLIHSYGRANYLKEAMNVFNQMQEAGCEPDRVTY 432

Query: 62  ATLINGFCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
            TLI+   + G +  A+ + +R ++     L PD   YS
Sbjct: 433 CTLIDIHAKAGFLDIAMDMYQRMQE---AGLSPDTFTYS 468


>AT2G29760.1 | Symbols: OTP81 | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr2:12712884-12715100 FORWARD
           LENGTH=738
          Length = 738

 Score = 48.9 bits (115), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 31/95 (32%), Positives = 52/95 (54%), Gaps = 10/95 (10%)

Query: 1   MKHYSTVISLS-----HQMQLK-GIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGY 54
           +K  + V SLS     H M +K  +  +   +N LI CY   G ++ A  VF TI+++  
Sbjct: 138 IKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEK-- 195

Query: 55  QPDVFTFATLINGFCQMGQIRPALQLLRRAEDDEL 89
             DV ++ ++INGF Q G    AL+L ++ E +++
Sbjct: 196 --DVVSWNSMINGFVQKGSPDKALELFKKMESEDV 228


>AT2G41720.1 | Symbols: EMB2654 | Tetratricopeptide repeat
           (TPR)-like superfamily protein | chr2:17403744-17407127
           REVERSE LENGTH=822
          Length = 822

 Score = 48.9 bits (115), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 50/92 (54%), Gaps = 3/92 (3%)

Query: 6   TVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLI 65
           T +S+   ++  GI+P+ V+   L++ Y    Q   A  VF  +RK   +P+V T+  LI
Sbjct: 373 TALSVLGDIKQNGIIPDVVSYTCLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALI 432

Query: 66  NGFCQMGQIRPALQLLRRAEDDELVQLKPDVV 97
           + +   G +  A+++ R+ E D    +KP+VV
Sbjct: 433 DAYGSNGFLAEAVEIFRQMEQD---GIKPNVV 461



 Score = 47.4 bits (111), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/103 (30%), Positives = 55/103 (53%), Gaps = 9/103 (8%)

Query: 2   KHYSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQ--PDVF 59
           + YS  +S    M+   + P+  T NI+I C   LGQ + A  +F ++R++  +  PDV 
Sbjct: 262 RQYSKALSYFELMKGAKVRPDTTTFNIIIYCLSKLGQSSQALDLFNSMREKRAECRPDVV 321

Query: 60  TFATLINGFCQMGQIRPALQLLRRAEDDELVQ--LKPDVVIYS 100
           TF ++++ +   G+I        RA  + +V   LKP++V Y+
Sbjct: 322 TFTSIMHLYSVKGEIENC-----RAVFEAMVAEGLKPNIVSYN 359


>AT2G41720.2 | Symbols: EMB2654 | Tetratricopeptide repeat
           (TPR)-like superfamily protein | chr2:17403861-17406648
           REVERSE LENGTH=683
          Length = 683

 Score = 48.9 bits (115), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 50/92 (54%), Gaps = 3/92 (3%)

Query: 6   TVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLI 65
           T +S+   ++  GI+P+ V+   L++ Y    Q   A  VF  +RK   +P+V T+  LI
Sbjct: 241 TALSVLGDIKQNGIIPDVVSYTCLLNSYGRSRQPGKAKEVFLMMRKERRKPNVVTYNALI 300

Query: 66  NGFCQMGQIRPALQLLRRAEDDELVQLKPDVV 97
           + +   G +  A+++ R+ E D    +KP+VV
Sbjct: 301 DAYGSNGFLAEAVEIFRQMEQD---GIKPNVV 329



 Score = 47.4 bits (111), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/103 (30%), Positives = 55/103 (53%), Gaps = 9/103 (8%)

Query: 2   KHYSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQ--PDVF 59
           + YS  +S    M+   + P+  T NI+I C   LGQ + A  +F ++R++  +  PDV 
Sbjct: 130 RQYSKALSYFELMKGAKVRPDTTTFNIIIYCLSKLGQSSQALDLFNSMREKRAECRPDVV 189

Query: 60  TFATLINGFCQMGQIRPALQLLRRAEDDELVQ--LKPDVVIYS 100
           TF ++++ +   G+I        RA  + +V   LKP++V Y+
Sbjct: 190 TFTSIMHLYSVKGEIENC-----RAVFEAMVAEGLKPNIVSYN 227


>AT3G25210.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:9180348-9181487 FORWARD
           LENGTH=379
          Length = 379

 Score = 48.9 bits (115), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 43/79 (54%)

Query: 7   VISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLIN 66
           V SL+ QM+  G++P+    N++I  Y    +++ A  VF  +   G +P+ +T++ L+ 
Sbjct: 207 VRSLTKQMKSNGVIPDTFVLNMIIKAYAKCLEVDEAIRVFKEMALYGSEPNAYTYSYLVK 266

Query: 67  GFCQMGQIRPALQLLRRAE 85
           G C+ G++   L   +  +
Sbjct: 267 GVCEKGRVGQGLGFYKEMQ 285


>AT3G61520.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:22768974-22771274 REVERSE
           LENGTH=766
          Length = 766

 Score = 48.5 bits (114), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 27/100 (27%), Positives = 50/100 (50%), Gaps = 4/100 (4%)

Query: 2   KHYSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATI-RKRGYQPDVFT 60
           K + +V  +  QM+  G+ P   T   +ID YC +G+++ A  +F  +       P+   
Sbjct: 595 KDFESVERMMEQMREDGLDPTVTTYGAVIDAYCSVGELDEALKLFKDMGLHSKVNPNTVI 654

Query: 61  FATLINGFCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           +  LIN F ++G    AL L    E+ ++  ++P+V  Y+
Sbjct: 655 YNILINAFSKLGNFGQALSL---KEEMKMKMVRPNVETYN 691


>AT1G11710.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:3948886-3950859 FORWARD
           LENGTH=657
          Length = 657

 Score = 48.5 bits (114), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 29/88 (32%), Positives = 47/88 (53%)

Query: 13  QMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMG 72
           +M   G + N  T N++I  +C   ++  A SVF  + K G  P+V +F  +I+G C+ G
Sbjct: 208 EMDSLGYVENVNTFNLVIYSFCKESKLFEALSVFYRMLKCGVWPNVVSFNMMIDGACKTG 267

Query: 73  QIRPALQLLRRAEDDELVQLKPDVVIYS 100
            +R ALQLL +        + P+ V Y+
Sbjct: 268 DMRFALQLLGKMGMMSGNFVSPNAVTYN 295


>AT5G28460.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:10374927-10377227 FORWARD
           LENGTH=766
          Length = 766

 Score = 48.5 bits (114), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 27/100 (27%), Positives = 50/100 (50%), Gaps = 4/100 (4%)

Query: 2   KHYSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATI-RKRGYQPDVFT 60
           K + +V  +  QM+  G+ P   T   +ID YC +G+++ A  +F  +       P+   
Sbjct: 595 KDFESVERMMEQMREDGLDPTVTTYGAVIDAYCSVGELDEALKLFKDMGLHSKVNPNTVI 654

Query: 61  FATLINGFCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           +  LIN F ++G    AL L    E+ ++  ++P+V  Y+
Sbjct: 655 YNILINAFSKLGNFGQALSL---KEEMKMKMVRPNVETYN 691


>AT5G28370.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:10332375-10334558 REVERSE
           LENGTH=727
          Length = 727

 Score = 48.5 bits (114), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 27/100 (27%), Positives = 50/100 (50%), Gaps = 4/100 (4%)

Query: 2   KHYSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATI-RKRGYQPDVFT 60
           K + +V  +  QM+  G+ P   T   +ID YC +G+++ A  +F  +       P+   
Sbjct: 595 KDFESVERMMEQMREDGLDPTVTTYGAVIDAYCSVGELDEALKLFKDMGLHSKVNPNTVI 654

Query: 61  FATLINGFCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           +  LIN F ++G    AL L    E+ ++  ++P+V  Y+
Sbjct: 655 YNILINAFSKLGNFGQALSL---KEEMKMKMVRPNVETYN 691


>AT4G19440.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:10602006-10604483 REVERSE
           LENGTH=825
          Length = 825

 Score = 48.5 bits (114), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 4/84 (4%)

Query: 17  KGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQIRP 76
           KG+ P+  T NIL+       +       F  + K G  PDV+ F T IN FC+ G++  
Sbjct: 220 KGMFPSKTTCNILLTSLVRANEFQKCCEAFDVVCK-GVSPDVYLFTTAINAFCKGGKVEE 278

Query: 77  ALQLLRRAEDDELVQLKPDVVIYS 100
           A++L  + E+     + P+VV ++
Sbjct: 279 AVKLFSKMEE---AGVAPNVVTFN 299



 Score = 48.5 bits (114), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 3/96 (3%)

Query: 5   STVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATL 64
           S  + L   M+ KGI PN  T   LI     + ++  A  +F  +R  G +P+VF +  L
Sbjct: 662 SMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTAL 721

Query: 65  INGFCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           I+G+ ++GQ+     LLR         + P+ + Y+
Sbjct: 722 IDGYGKLGQMVKVECLLREMHSK---NVHPNKITYT 754



 Score = 46.6 bits (109), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 3/88 (3%)

Query: 13  QMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMG 72
           +M  K + PN V  N LI  YC  G+++ A  +   ++ +G  P+  T+ +LI G   + 
Sbjct: 635 EMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIIS 694

Query: 73  QIRPALQLLRRAEDDELVQLKPDVVIYS 100
           ++  A  L    E+  +  L+P+V  Y+
Sbjct: 695 RVEEAKLLF---EEMRMEGLEPNVFHYT 719



 Score = 46.2 bits (108), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 7/99 (7%)

Query: 4   YSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFAT 63
           +S  + L  Q   KG + +  TSN L+   C  G+++ AF +   I  RG   D  ++ T
Sbjct: 486 HSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNT 545

Query: 64  LINGFCQMGQIRPALQLLRRAEDDELVQ--LKPDVVIYS 100
           LI+G C   ++  A   L     DE+V+  LKPD   YS
Sbjct: 546 LISGCCGKKKLDEAFMFL-----DEMVKRGLKPDNYTYS 579



 Score = 45.8 bits (107), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 36/70 (51%)

Query: 13  QMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMG 72
           +M  KG  PN +  N LID +   G +N A  +   +  +G      T+ TLI G+C+ G
Sbjct: 355 EMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNG 414

Query: 73  QIRPALQLLR 82
           Q   A +LL+
Sbjct: 415 QADNAERLLK 424


>AT4G19440.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:10602006-10604483 REVERSE
           LENGTH=825
          Length = 825

 Score = 48.5 bits (114), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 4/84 (4%)

Query: 17  KGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQIRP 76
           KG+ P+  T NIL+       +       F  + K G  PDV+ F T IN FC+ G++  
Sbjct: 220 KGMFPSKTTCNILLTSLVRANEFQKCCEAFDVVCK-GVSPDVYLFTTAINAFCKGGKVEE 278

Query: 77  ALQLLRRAEDDELVQLKPDVVIYS 100
           A++L  + E+     + P+VV ++
Sbjct: 279 AVKLFSKMEE---AGVAPNVVTFN 299



 Score = 48.5 bits (114), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 3/96 (3%)

Query: 5   STVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATL 64
           S  + L   M+ KGI PN  T   LI     + ++  A  +F  +R  G +P+VF +  L
Sbjct: 662 SMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTAL 721

Query: 65  INGFCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           I+G+ ++GQ+     LLR         + P+ + Y+
Sbjct: 722 IDGYGKLGQMVKVECLLREMHSK---NVHPNKITYT 754



 Score = 46.6 bits (109), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 3/88 (3%)

Query: 13  QMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMG 72
           +M  K + PN V  N LI  YC  G+++ A  +   ++ +G  P+  T+ +LI G   + 
Sbjct: 635 EMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIIS 694

Query: 73  QIRPALQLLRRAEDDELVQLKPDVVIYS 100
           ++  A  L    E+  +  L+P+V  Y+
Sbjct: 695 RVEEAKLLF---EEMRMEGLEPNVFHYT 719



 Score = 46.2 bits (108), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 33/99 (33%), Positives = 49/99 (49%), Gaps = 7/99 (7%)

Query: 4   YSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFAT 63
           +S  + L  Q   KG + +  TSN L+   C  G+++ AF +   I  RG   D  ++ T
Sbjct: 486 HSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNT 545

Query: 64  LINGFCQMGQIRPALQLLRRAEDDELVQ--LKPDVVIYS 100
           LI+G C   ++  A   L     DE+V+  LKPD   YS
Sbjct: 546 LISGCCGKKKLDEAFMFL-----DEMVKRGLKPDNYTYS 579



 Score = 45.8 bits (107), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 36/70 (51%)

Query: 13  QMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMG 72
           +M  KG  PN +  N LID +   G +N A  +   +  +G      T+ TLI G+C+ G
Sbjct: 355 EMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNG 414

Query: 73  QIRPALQLLR 82
           Q   A +LL+
Sbjct: 415 QADNAERLLK 424


>AT5G46580.1 | Symbols:  | pentatricopeptide (PPR) repeat-containing
           protein | chr5:18897510-18899645 REVERSE LENGTH=711
          Length = 711

 Score = 48.1 bits (113), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 9/100 (9%)

Query: 4   YSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFAT 63
           Y+  I    +M   G+MP+ VT + ++D Y   G++    S++      G++PD   F+ 
Sbjct: 237 YNKAIEWFERMYKTGLMPDEVTYSAILDVYSKSGKVEEVLSLYERAVATGWKPDAIAFSV 296

Query: 64  LINGFCQMGQ---IRPALQLLRRAEDDELVQLKPDVVIYS 100
           L   F + G    IR  LQ ++  +      +KP+VV+Y+
Sbjct: 297 LGKMFGEAGDYDGIRYVLQEMKSMD------VKPNVVVYN 330


>AT5G18950.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:6328519-6329970 REVERSE
           LENGTH=483
          Length = 483

 Score = 48.1 bits (113), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 48/96 (50%), Gaps = 3/96 (3%)

Query: 5   STVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATL 64
           S V +  ++M   G     ++ N +I  +C  G+ + AF +F  + + G  P+  T+  L
Sbjct: 370 SLVEAFYNEMLRNGYGGTMLSCNTMIKGFCSHGKSDEAFEIFKNMSETGVTPNAITYNAL 429

Query: 65  INGFCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           I GFC+  ++   L+L +     + + LKP  + Y+
Sbjct: 430 IKGFCKENKVEKGLKLYKEL---KALGLKPSGMAYA 462


>AT1G52640.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:19608857-19610428 REVERSE
           LENGTH=523
          Length = 523

 Score = 48.1 bits (113), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 46/88 (52%), Gaps = 3/88 (3%)

Query: 13  QMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMG 72
           +M  +  + + +  N L+D  C  G ++  + +F  +   G +PD ++FA  I+ +C  G
Sbjct: 233 EMLERNCVVDLLAYNALLDALCKSGDVDGGYKMFQEMGNLGLKPDAYSFAIFIHAYCDAG 292

Query: 73  QIRPALQLLRRAEDDELVQLKPDVVIYS 100
            +  A ++L R +  +LV   P+V  ++
Sbjct: 293 DVHSAYKVLDRMKRYDLV---PNVYTFN 317


>AT3G18020.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:6165449-6167515 FORWARD
           LENGTH=688
          Length = 688

 Score = 48.1 bits (113), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 39/73 (53%)

Query: 10  LSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFC 69
           L   M+ +G +P+ VT   LI  YC + ++  A  VF  +R  G +P+  T + LI GF 
Sbjct: 184 LVFDMRNRGHLPDVVTFTTLIGGYCEIRELEVAHKVFDEMRVCGIRPNSLTLSVLIGGFL 243

Query: 70  QMGQIRPALQLLR 82
           +M  +    +L++
Sbjct: 244 KMRDVETGRKLMK 256


>AT3G13150.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:4227975-4229630 REVERSE
           LENGTH=551
          Length = 551

 Score = 47.8 bits (112), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 30/51 (58%)

Query: 18  GIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGF 68
           GI P+ VT N +I   C  G ++   S+F  + K G++PD+ +F TL+  F
Sbjct: 188 GITPDLVTYNTMIKALCRKGSMDDILSIFEELEKNGFEPDLISFNTLLEEF 238


>AT4G39620.2 | Symbols: EMB2453 | Tetratricopeptide repeat
           (TPR)-like superfamily protein | chr4:18395294-18397393
           FORWARD LENGTH=510
          Length = 510

 Score = 47.8 bits (112), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 48/89 (53%), Gaps = 6/89 (6%)

Query: 15  QLKGI---MPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQM 71
           ++KGI    PN VT NIL+  +   G+++   ++F  +      PDV+TF  +++ + + 
Sbjct: 197 KMKGIERCQPNVVTYNILLRAFAQSGKVDQVNALFKDLDMSPVSPDVYTFNGVMDAYGKN 256

Query: 72  GQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           G I+    +L R   +E    KPD++ ++
Sbjct: 257 GMIKEMEAVLTRMRSNE---CKPDIITFN 282


>AT4G39620.1 | Symbols: EMB2453, ATPPR5 | Tetratricopeptide repeat
           (TPR)-like superfamily protein | chr4:18395294-18397578
           FORWARD LENGTH=563
          Length = 563

 Score = 47.8 bits (112), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 48/89 (53%), Gaps = 6/89 (6%)

Query: 15  QLKGI---MPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQM 71
           ++KGI    PN VT NIL+  +   G+++   ++F  +      PDV+TF  +++ + + 
Sbjct: 197 KMKGIERCQPNVVTYNILLRAFAQSGKVDQVNALFKDLDMSPVSPDVYTFNGVMDAYGKN 256

Query: 72  GQIRPALQLLRRAEDDELVQLKPDVVIYS 100
           G I+    +L R   +E    KPD++ ++
Sbjct: 257 GMIKEMEAVLTRMRSNE---CKPDIITFN 282


>AT5G46680.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr5:18941118-18942524 FORWARD
           LENGTH=468
          Length = 468

 Score = 47.8 bits (112), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 4/99 (4%)

Query: 2   KHYSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTF 61
           +H      L   + L G++P   T NIL+D  C  G  + A  +F  ++ R  +P++ T+
Sbjct: 133 RHGEAFKILHEDIHLAGLVPGIDTYNILLDALCKSGHTDNAIELFKHLKSR-VKPELMTY 191

Query: 62  ATLINGFCQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
             LING C+  ++     ++R  +        P+ V Y+
Sbjct: 192 NILINGLCKSRRVGSVDWMMRELKKSGYT---PNAVTYT 227



 Score = 47.4 bits (111), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 7/85 (8%)

Query: 18  GIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQIRPA 77
           G++P+ +T N LI  Y     I+ A++V   +R+ G +PDV T+ +LI+G  +   +   
Sbjct: 43  GVLPDVITYNTLIKGYTRFIGIDEAYAVTRRMREAGIEPDVTTYNSLISGAAKNLMLNRV 102

Query: 78  LQLLRRAEDDELVQ--LKPDVVIYS 100
           LQL      DE++   L PD+  Y+
Sbjct: 103 LQLF-----DEMLHSGLSPDMWSYN 122



 Score = 45.4 bits (106), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 41/79 (51%)

Query: 7   VISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLIN 66
           V  L  ++++KG+ P+  T  I+++   ++G    A    A I + G QP V T   LI+
Sbjct: 313 VDDLLEEIEMKGLKPDDYTHTIIVNGLLNIGNTGGAEKHLACIGEMGMQPSVVTCNCLID 372

Query: 67  GFCQMGQIRPALQLLRRAE 85
           G C+ G +  A++L    E
Sbjct: 373 GLCKAGHVDRAMRLFASME 391


>AT5G42310.1 | Symbols:  | Pentatricopeptide repeat (PPR-like)
           superfamily protein | chr5:16915860-16918238 FORWARD
           LENGTH=709
          Length = 709

 Score = 47.4 bits (111), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 3/92 (3%)

Query: 9   SLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGF 68
           S+  +M+ +G+ P+  T ++LID Y + G+   A  V   +     QP+ F F+ L+ GF
Sbjct: 360 SMVSEMEKRGVSPDEHTYSLLIDAYVNAGRWESARIVLKEMEAGDVQPNSFVFSRLLAGF 419

Query: 69  CQMGQIRPALQLLRRAEDDELVQLKPDVVIYS 100
              G+ +   Q+L+  +    + +KPD   Y+
Sbjct: 420 RDRGEWQKTFQVLKEMKS---IGVKPDRQFYN 448


>AT2G40240.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr2:16811051-16812106 FORWARD
           LENGTH=351
          Length = 351

 Score = 47.4 bits (111), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 41/79 (51%)

Query: 14  MQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMGQ 73
           M+ K +  +    N  +  +C+ G++  A  V   I + G  PD  ++  L+ G C+ G+
Sbjct: 168 MRSKSVSMDVTAYNYFLTSHCYDGELESASEVMRKIEEDGNSPDSRSYDALVLGACRAGK 227

Query: 74  IRPALQLLRRAEDDELVQL 92
           +  A+ +LRR E+D +  L
Sbjct: 228 VEAAMAILRRMEEDGVTVL 246


>AT3G29290.1 | Symbols: emb2076 | Pentatricopeptide repeat (PPR)
           superfamily protein | chr3:11238421-11240125 FORWARD
           LENGTH=540
          Length = 540

 Score = 47.0 bits (110), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 42/91 (46%)

Query: 2   KHYSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTF 61
           + +   + +   M  KG+ PN V  N LI+     G++   F V++ ++  G++PD +T+
Sbjct: 298 EKWDLALKIFQSMLKKGMKPNLVACNTLINSLGKAGKVGLVFKVYSVLKSLGHKPDEYTW 357

Query: 62  ATLINGFCQMGQIRPALQLLRRAEDDELVQL 92
             L+    +  +    LQL      + L  L
Sbjct: 358 NALLTALYKANRYEDVLQLFDMIRSENLCCL 388


>AT1G22960.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:8128086-8130242 REVERSE
           LENGTH=718
          Length = 718

 Score = 46.6 bits (109), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 43/79 (54%)

Query: 9   SLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGF 68
           +L  +M  K + P+ +T  +LI  +   G++  AF     ++KRG +P+V T   L+ G 
Sbjct: 571 NLYDEMLRKRLYPSVITYFVLIYGHAKAGRLEQAFQYSTEMKKRGVRPNVMTHNALLYGM 630

Query: 69  CQMGQIRPALQLLRRAEDD 87
           C+ G I  A + L + E++
Sbjct: 631 CKAGNIDEAYRYLCKMEEE 649


>AT1G73710.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr1:27721190-27724165 FORWARD
           LENGTH=991
          Length = 991

 Score = 46.2 bits (108), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 34/68 (50%)

Query: 3   HYSTVISLSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFA 62
           H S   SL  +M+ KGI P+  T NIL+  +   G I  A   +  IRK G  PD  T  
Sbjct: 355 HLSEAESLLKKMEEKGISPDTKTYNILLSLHADAGDIEAALEYYRKIRKVGLFPDTVTHR 414

Query: 63  TLINGFCQ 70
            +++  CQ
Sbjct: 415 AVLHILCQ 422



 Score = 45.8 bits (107), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 37/74 (50%)

Query: 13  QMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFCQMG 72
           +M   G  P   T   +I  Y  LG ++ A  ++  + K G +P+   + +LINGF + G
Sbjct: 575 EMLDSGCKPGCKTYAAMIASYVRLGLLSDAVDLYEAMEKTGVKPNEVVYGSLINGFAESG 634

Query: 73  QIRPALQLLRRAED 86
            +  A+Q  R  E+
Sbjct: 635 MVEEAIQYFRMMEE 648


>AT5G47360.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr5:19214445-19215878 REVERSE
           LENGTH=477
          Length = 477

 Score = 45.4 bits (106), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 49/92 (53%), Gaps = 1/92 (1%)

Query: 10  LSHQMQLKGIMPNFVTSNILIDCYCHLGQINFAFSVFATIRKRGYQPDVFTFATLINGFC 69
           L  +M   G+ P+ +T   +I+ YC+ G+I+ A+ +   + K     +  T++ ++ G C
Sbjct: 187 LIKEMDCVGLYPDVITYTSMINGYCNAGKIDDAWRLAKEMSKHDCVLNSVTYSRILEGVC 246

Query: 70  QMGQIRPALQLLRRAE-DDELVQLKPDVVIYS 100
           + G +  AL+LL   E +D    + P+ V Y+
Sbjct: 247 KSGDMERALELLAEMEKEDGGGLISPNAVTYT 278