Miyakogusa Predicted Gene

Lj2g3v1468300.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1468300.1 tr|Q2R6R5|Q2R6R5_ORYSJ Expressed protein OS=Oryza
sativa subsp. japonica GN=LOC_Os11g19130 PE=2 SV=1,33.78,3e-18,SPT2
chromatin protein,Chromatin SPT2; SPT2,Chromatin SPT2; SUBFAMILY NOT
NAMED,NULL; YEAST SPT2-REL,CUFF.37215.1
         (475 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G22720.2 | Symbols:  | SPT2 chromatin protein | chr2:9657344-...   134   2e-31
AT2G22720.3 | Symbols:  | SPT2 chromatin protein | chr2:9658182-...   134   2e-31
AT4G37860.1 | Symbols:  | SPT2 chromatin protein | chr4:17800589...    86   5e-17
AT2G22720.1 | Symbols:  | SPT2 chromatin protein | chr2:9659235-...    80   5e-15

>AT2G22720.2 | Symbols:  | SPT2 chromatin protein |
           chr2:9657344-9660532 FORWARD LENGTH=672
          Length = 672

 Score =  134 bits (336), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 105/258 (40%), Positives = 137/258 (53%), Gaps = 21/258 (8%)

Query: 54  YLGLRQKLKENHRKQLRKENSASLKDCSATKKKLPNDNFGSFFGPSQPVIAPRVIQESKS 113
           +L  RQKLKE+ RK++    SA+ +     ++KLP ++FGSFFGPS+PVI+ RVIQESKS
Sbjct: 145 FLESRQKLKESIRKKM-GNGSANAQSSQERRRKLPYNDFGSFFGPSRPVISSRVIQESKS 203

Query: 114 LLENQHLQSRLXXXXXXXXXXXXXXXXXXXPSSHKQPPKVSETKIKAQTVKDTRDYSFLM 173
           LLEN+ L+                       S  K+P  V+E + K +T+KDTRDYSFL 
Sbjct: 204 LLENE-LRKMSNSSQTKKRPVPTNGSGSKNVSQEKRPKVVNEVRRKVETLKDTRDYSFLF 262

Query: 174 SDDAELPAPAKELPSRNTSVHNSEGRPAQVARMIKQPL-INGGKPARGSGENRKPAVGAG 232
           SDDAELP P KE  SR+ S  NSE R AQ++   KQ   ING        E ++P    G
Sbjct: 263 SDDAELPVPKKESLSRSGSFPNSEARSAQLSSRPKQSSGINGRTAHSPHREEKRPVSANG 322

Query: 233 HSVPKSGPSCKLSDTNKSGMASVDSRKQLGSNSGIGPGRPVVS-KQLPSKMPASTMGNKS 291
           HS     PS   S  N S  +S        S S +   RP  S  Q+P+  PAS+     
Sbjct: 323 HSR----PSSSGSQMNHSRPSS--------SGSKMNHSRPATSGSQMPNSRPASSGSQMQ 370

Query: 292 STLGMKRSVNGVQKPLPS 309
           S     R+V+G  +P  S
Sbjct: 371 S-----RAVSGSGRPASS 383



 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 84/250 (33%), Positives = 126/250 (50%), Gaps = 50/250 (20%)

Query: 220 GSGENRK-----PAVGA---GHSVPKSGPSCKLSDTNKSGMASV--DSRKQLGSNSGIGP 269
           GS  NR+     P  G+   G S  ++G     SD+ +S  A V  D RKQ+ S++G+GP
Sbjct: 433 GSSTNRQAPMRPPGSGSTMNGQSANRNGQLNSRSDSRRSAPAKVPVDHRKQMSSSNGVGP 492

Query: 270 GRPVV-SKQLPSKMPASTMGNKSSTLGMKRSVNGVQKPLPSKLNSSAPKQFVEQRRDVRV 328
           GR    ++ LPSK   S++  K S    K S+   Q+P  S+  SS P+Q          
Sbjct: 493 GRSATNARPLPSK---SSLERKPSISAGKSSLQSPQRPSSSRPMSSDPRQ---------- 539

Query: 329 QNKPLPSKVHSSAPKQIVDQRKDSRDQNKPKMVPKQPVASSRAQV-NKPPLKQIPKRSDL 387
                          ++V+QRK SRD   P+M+PKQ   +S+ Q+ +KP LK+ P R   
Sbjct: 540 ---------------RVVEQRKVSRDMATPRMIPKQSAPTSKHQMMSKPALKRPPSRD-- 582

Query: 388 PVHRPKNKVGKRHPXXXXXXXXGMDYRNMIRSMFNYNPNKFVGDDDDD-NMEAGFDEIMR 446
            +   +  + K+ P          +  +M+R +    P +F   DDDD NMEAGF++I +
Sbjct: 583 -IDHERRLLKKKKPARSED----QEAFDMLRQLLP--PKRFSRYDDDDINMEAGFEDIQK 635

Query: 447 EEKRSALIAK 456
           EE+RSA IA+
Sbjct: 636 EERRSARIAR 645


>AT2G22720.3 | Symbols:  | SPT2 chromatin protein |
           chr2:9658182-9660532 FORWARD LENGTH=569
          Length = 569

 Score =  134 bits (336), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 105/258 (40%), Positives = 137/258 (53%), Gaps = 21/258 (8%)

Query: 54  YLGLRQKLKENHRKQLRKENSASLKDCSATKKKLPNDNFGSFFGPSQPVIAPRVIQESKS 113
           +L  RQKLKE+ RK++    SA+ +     ++KLP ++FGSFFGPS+PVI+ RVIQESKS
Sbjct: 42  FLESRQKLKESIRKKM-GNGSANAQSSQERRRKLPYNDFGSFFGPSRPVISSRVIQESKS 100

Query: 114 LLENQHLQSRLXXXXXXXXXXXXXXXXXXXPSSHKQPPKVSETKIKAQTVKDTRDYSFLM 173
           LLEN+ L+                       S  K+P  V+E + K +T+KDTRDYSFL 
Sbjct: 101 LLENE-LRKMSNSSQTKKRPVPTNGSGSKNVSQEKRPKVVNEVRRKVETLKDTRDYSFLF 159

Query: 174 SDDAELPAPAKELPSRNTSVHNSEGRPAQVARMIKQPL-INGGKPARGSGENRKPAVGAG 232
           SDDAELP P KE  SR+ S  NSE R AQ++   KQ   ING        E ++P    G
Sbjct: 160 SDDAELPVPKKESLSRSGSFPNSEARSAQLSSRPKQSSGINGRTAHSPHREEKRPVSANG 219

Query: 233 HSVPKSGPSCKLSDTNKSGMASVDSRKQLGSNSGIGPGRPVVS-KQLPSKMPASTMGNKS 291
           HS     PS   S  N S  +S        S S +   RP  S  Q+P+  PAS+     
Sbjct: 220 HSR----PSSSGSQMNHSRPSS--------SGSKMNHSRPATSGSQMPNSRPASSGSQMQ 267

Query: 292 STLGMKRSVNGVQKPLPS 309
           S     R+V+G  +P  S
Sbjct: 268 S-----RAVSGSGRPASS 280



 Score = 80.5 bits (197), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 84/250 (33%), Positives = 126/250 (50%), Gaps = 50/250 (20%)

Query: 220 GSGENRK-----PAVGA---GHSVPKSGPSCKLSDTNKSGMASV--DSRKQLGSNSGIGP 269
           GS  NR+     P  G+   G S  ++G     SD+ +S  A V  D RKQ+ S++G+GP
Sbjct: 330 GSSTNRQAPMRPPGSGSTMNGQSANRNGQLNSRSDSRRSAPAKVPVDHRKQMSSSNGVGP 389

Query: 270 GRPVV-SKQLPSKMPASTMGNKSSTLGMKRSVNGVQKPLPSKLNSSAPKQFVEQRRDVRV 328
           GR    ++ LPSK   S++  K S    K S+   Q+P  S+  SS P+Q          
Sbjct: 390 GRSATNARPLPSK---SSLERKPSISAGKSSLQSPQRPSSSRPMSSDPRQ---------- 436

Query: 329 QNKPLPSKVHSSAPKQIVDQRKDSRDQNKPKMVPKQPVASSRAQV-NKPPLKQIPKRSDL 387
                          ++V+QRK SRD   P+M+PKQ   +S+ Q+ +KP LK+ P R   
Sbjct: 437 ---------------RVVEQRKVSRDMATPRMIPKQSAPTSKHQMMSKPALKRPPSRD-- 479

Query: 388 PVHRPKNKVGKRHPXXXXXXXXGMDYRNMIRSMFNYNPNKFVGDDDDD-NMEAGFDEIMR 446
            +   +  + K+ P          +  +M+R +    P +F   DDDD NMEAGF++I +
Sbjct: 480 -IDHERRLLKKKKPARSED----QEAFDMLRQLLP--PKRFSRYDDDDINMEAGFEDIQK 532

Query: 447 EEKRSALIAK 456
           EE+RSA IA+
Sbjct: 533 EERRSARIAR 542


>AT4G37860.1 | Symbols:  | SPT2 chromatin protein |
           chr4:17800589-17801907 REVERSE LENGTH=354
          Length = 354

 Score = 86.3 bits (212), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 60/160 (37%), Positives = 82/160 (51%), Gaps = 13/160 (8%)

Query: 53  EYLGLRQKLKENHRKQLRKENS----ASLKDCSATKKKLPNDNFGSFFGPSQPVIAPRVI 108
           E+L LRQ++KE+ R +++  ++     S      +K  LP D FGSFFGPSQ VIA RV+
Sbjct: 4   EFLELRQRIKESIRTKMQSGDTIIAPTSQTQLHQSKSNLPYD-FGSFFGPSQTVIASRVL 62

Query: 109 QESKSLLENQ--------HLQSRLXXXXXXXXXXXXXXXXXXXPSSHKQPPKVSETKIKA 160
           QESK LLEN+         +Q+                      +        +E K KA
Sbjct: 63  QESKPLLENETSAAKMLNSIQNVCLIRSFFFTFLTLQKKSSVLMNDASGTKNANEVKRKA 122

Query: 161 QTVKDTRDYSFLMSDDAELPAPAKELPSRNTSVHNSEGRP 200
           + +KD RDYSFL SDDA+LP   KE P+   S   S+ +P
Sbjct: 123 EKLKDGRDYSFLFSDDAQLPVSIKEPPTSRPSSTESQMQP 162


>AT2G22720.1 | Symbols:  | SPT2 chromatin protein |
           chr2:9659235-9660532 FORWARD LENGTH=340
          Length = 340

 Score = 79.7 bits (195), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 84/250 (33%), Positives = 126/250 (50%), Gaps = 50/250 (20%)

Query: 220 GSGENRK-----PAVGA---GHSVPKSGPSCKLSDTNKSGMASV--DSRKQLGSNSGIGP 269
           GS  NR+     P  G+   G S  ++G     SD+ +S  A V  D RKQ+ S++G+GP
Sbjct: 101 GSSTNRQAPMRPPGSGSTMNGQSANRNGQLNSRSDSRRSAPAKVPVDHRKQMSSSNGVGP 160

Query: 270 GRPVV-SKQLPSKMPASTMGNKSSTLGMKRSVNGVQKPLPSKLNSSAPKQFVEQRRDVRV 328
           GR    ++ LPSK   S++  K S    K S+   Q+P  S+  SS P+Q          
Sbjct: 161 GRSATNARPLPSK---SSLERKPSISAGKSSLQSPQRPSSSRPMSSDPRQ---------- 207

Query: 329 QNKPLPSKVHSSAPKQIVDQRKDSRDQNKPKMVPKQPVASSRAQV-NKPPLKQIPKRSDL 387
                          ++V+QRK SRD   P+M+PKQ   +S+ Q+ +KP LK+ P R   
Sbjct: 208 ---------------RVVEQRKVSRDMATPRMIPKQSAPTSKHQMMSKPALKRPPSRD-- 250

Query: 388 PVHRPKNKVGKRHPXXXXXXXXGMDYRNMIRSMFNYNPNKFVGDDDDD-NMEAGFDEIMR 446
            +   +  + K+ P          +  +M+R +    P +F   DDDD NMEAGF++I +
Sbjct: 251 -IDHERRLLKKKKPARSED----QEAFDMLRQLLP--PKRFSRYDDDDINMEAGFEDIQK 303

Query: 447 EEKRSALIAK 456
           EE+RSA IA+
Sbjct: 304 EERRSARIAR 313