Miyakogusa Predicted Gene

Lj2g3v1468090.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1468090.1 Non Chatacterized Hit- tr|K3Y162|K3Y162_SETIT
Uncharacterized protein (Fragment) OS=Setaria italica
,68.75,0.000005,seg,NULL; DNA BINDING,NULL; FAMILY NOT
NAMED,NULL,CUFF.37185.1
         (434 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G53440.2 | Symbols:  | Homeodomain-like superfamily protein |...   173   3e-43
AT3G53440.1 | Symbols:  | Homeodomain-like superfamily protein |...   173   3e-43

>AT3G53440.2 | Symbols:  | Homeodomain-like superfamily protein |
           chr3:19810936-19812474 FORWARD LENGTH=512
          Length = 512

 Score =  173 bits (438), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 110/259 (42%), Positives = 156/259 (60%), Gaps = 33/259 (12%)

Query: 151 GWTKEQELALQRAYYSAKPSPHFWKNVSKLVPGKSQQDCFDRIHHDYMTPPQSQPRSRAK 210
           GWT+E ELALQ AY + KPSP+FWK V+K+VPGKS Q+CFDR++   +TP Q+QPR   K
Sbjct: 260 GWTEELELALQGAYLTVKPSPNFWKKVAKMVPGKSAQECFDRVNSALITPRQAQPRRATK 319

Query: 211 TMNSSPLHKFSISASKVLKPIDKTAKRSKSFKQKSFITQKSIEKLLQNRFKVDKDREGDI 270
           T+ S+ + +FS+SASK+LKP    + ++K  ++++ +++K +  LL+ +  +D+    D+
Sbjct: 320 TILST-IPQFSLSASKLLKP---NSPKTKIRQRRNNLSKKVVRHLLEKQNHMDQGLGFDL 375

Query: 271 FSVLEPNIEIPTNALQSSPT---FSTPKQLKENQGLLNSCTGTSSSSQKKTLSRFSNSRV 327
           FSVLEPN    T+   S+P     S PK       +L S    SS               
Sbjct: 376 FSVLEPNT---TSNFLSTPMEKGRSLPK-------ILESPVPCSSKDP------------ 413

Query: 328 SDVVSPPVLKQVKNKVQHEKYINQLRCREARRMAASKRTKKTITGKMMGEGSSILKKDAV 387
           + +VSPPVLKQVKNK  HEKYI+ L  R+A+R A S R    + GK       I KKD+V
Sbjct: 414 TTLVSPPVLKQVKNKALHEKYIDHLHIRDAKRKAESTR----LAGKENIRPIEIQKKDSV 469

Query: 388 KEAKVALVSEAKDAINKFQ 406
           + AK AL  + +DAI K +
Sbjct: 470 RAAKDALFFDVQDAIQKLK 488


>AT3G53440.1 | Symbols:  | Homeodomain-like superfamily protein |
           chr3:19810936-19812474 FORWARD LENGTH=512
          Length = 512

 Score =  173 bits (438), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 110/259 (42%), Positives = 156/259 (60%), Gaps = 33/259 (12%)

Query: 151 GWTKEQELALQRAYYSAKPSPHFWKNVSKLVPGKSQQDCFDRIHHDYMTPPQSQPRSRAK 210
           GWT+E ELALQ AY + KPSP+FWK V+K+VPGKS Q+CFDR++   +TP Q+QPR   K
Sbjct: 260 GWTEELELALQGAYLTVKPSPNFWKKVAKMVPGKSAQECFDRVNSALITPRQAQPRRATK 319

Query: 211 TMNSSPLHKFSISASKVLKPIDKTAKRSKSFKQKSFITQKSIEKLLQNRFKVDKDREGDI 270
           T+ S+ + +FS+SASK+LKP    + ++K  ++++ +++K +  LL+ +  +D+    D+
Sbjct: 320 TILST-IPQFSLSASKLLKP---NSPKTKIRQRRNNLSKKVVRHLLEKQNHMDQGLGFDL 375

Query: 271 FSVLEPNIEIPTNALQSSPT---FSTPKQLKENQGLLNSCTGTSSSSQKKTLSRFSNSRV 327
           FSVLEPN    T+   S+P     S PK       +L S    SS               
Sbjct: 376 FSVLEPNT---TSNFLSTPMEKGRSLPK-------ILESPVPCSSKDP------------ 413

Query: 328 SDVVSPPVLKQVKNKVQHEKYINQLRCREARRMAASKRTKKTITGKMMGEGSSILKKDAV 387
           + +VSPPVLKQVKNK  HEKYI+ L  R+A+R A S R    + GK       I KKD+V
Sbjct: 414 TTLVSPPVLKQVKNKALHEKYIDHLHIRDAKRKAESTR----LAGKENIRPIEIQKKDSV 469

Query: 388 KEAKVALVSEAKDAINKFQ 406
           + AK AL  + +DAI K +
Sbjct: 470 RAAKDALFFDVQDAIQKLK 488