Miyakogusa Predicted Gene

Lj2g3v1467970.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1467970.1 Non Chatacterized Hit- tr|I1QHM6|I1QHM6_ORYGL
Uncharacterized protein OS=Oryza glaberrima PE=4
SV=1,74.6,2e-18,FAMILY NOT NAMED,NULL; seg,NULL,CUFF.37178.1
         (436 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G37920.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   511   e-145
AT1G36320.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...   280   1e-75

>AT4G37920.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast
           thylakoid membrane, chloroplast, chloroplast envelope;
           BEST Arabidopsis thaliana protein match is: unknown
           protein (TAIR:AT1G36320.1); Has 123 Blast hits to 120
           proteins in 40 species: Archae - 2; Bacteria - 11;
           Metazoa - 8; Fungi - 0; Plants - 85; Viruses - 0; Other
           Eukaryotes - 17 (source: NCBI BLink). |
           chr4:17828538-17830317 REVERSE LENGTH=427
          Length = 427

 Score =  511 bits (1315), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 246/357 (68%), Positives = 295/357 (82%), Gaps = 4/357 (1%)

Query: 82  VEEQEETEIVKGCTMTQFCDKMIDLFLNEKTKSKEWRKYLIFREEWKKYRDSFFSRCQSR 141
           VE+  E E+ +G TM QFCDK+IDLFLNEK K K+W+ YL+ R+EW KY  +F+ RC+ R
Sbjct: 69  VEDPMEVEVAEGYTMAQFCDKIIDLFLNEKPKVKQWKTYLVLRDEWNKYSVNFYKRCRIR 128

Query: 142 ADMENDPIIKDKFISLERRVKKIDDEMEGHCNLLKEIQDFPTDINAIVARRRKDFTGEFF 201
           AD E DPI+K K +SLE +VKKID EME H +LLKEIQ+ PTDINAI A+RR+DFTGEFF
Sbjct: 129 ADTETDPILKQKLVSLESKVKKIDKEMEKHNDLLKEIQENPTDINAIAAKRRRDFTGEFF 188

Query: 202 RYLSLVADTYDSLEDRDGISRLGTRCLSAVTAYDNTLENVETLDTAQAKFDDILNSPSID 261
           RY++L+++T D LEDRD ++RL TRCLSAV+AYDNTLE+VETLDTAQAKF+DILNSPS+D
Sbjct: 189 RYVTLLSETLDGLEDRDAVARLATRCLSAVSAYDNTLESVETLDTAQAKFEDILNSPSVD 248

Query: 262 VACQKIKSLAKAKEXXXXXXXXXXXAWANAKESTTMKNEVKDIMYRLYKATKSSLRSITP 321
            AC+KI+SLAKAKE           A+A AKES T+ NE KDIMY LYKATKSSLRSITP
Sbjct: 249 SACEKIRSLAKAKELDSSLILLINSAYAAAKESQTVTNEAKDIMYHLYKATKSSLRSITP 308

Query: 322 KEIKLLKHLLNIIDPEERFSALATAFSPGDGHEAKNPDALYTTPKELHKWIQIMLDAYNL 381
           KEIKLLK+LLNI DPEERFSALATAFSPGD HEAK+P ALYTTPKELHKWI+IMLDAY+L
Sbjct: 309 KEIKLLKYLLNITDPEERFSALATAFSPGDDHEAKDPKALYTTPKELHKWIKIMLDAYHL 368

Query: 382 NKEETDLREAKQLTDPIVIQRLFILRDTIEQEYMEKSGLQKSET----DDDSKSEEF 434
           NKEETD++EAKQ++ PIVIQRLFIL+DTIE EY++K  +   ET    ++D+  E+F
Sbjct: 369 NKEETDIKEAKQMSQPIVIQRLFILKDTIEDEYLDKKTIVADETPKKEEEDTTIEDF 425


>AT1G36320.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT4G37920.1); Has 93 Blast hits to 90 proteins in
           22 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
           - 0; Plants - 85; Viruses - 0; Other Eukaryotes - 8
           (source: NCBI BLink). | chr1:13671876-13673939 FORWARD
           LENGTH=414
          Length = 414

 Score =  280 bits (717), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 137/331 (41%), Positives = 218/331 (65%), Gaps = 2/331 (0%)

Query: 87  ETEIVKGCTMTQFCDKMIDLFLNEKTKSKEWRKYLIFREEWKKYRDSFFSRCQSRADMEN 146
           E  +V    M + CDK+I++F+ +K    +WR+ L F +EW   R  F+ RCQ RAD E+
Sbjct: 84  EEVVVDNQRMIKVCDKLIEVFMVDKPTPSDWRRLLAFSKEWDSIRPHFYKRCQERADSED 143

Query: 147 DPIIKDKFISLERRVKKIDDEMEGHCNLLKEIQDFP-TDINAIVARRRKDFTGEFFRYLS 205
           +P +K K   L R++K++D++++ H  LL  I+  P  +I  +VARRRKDFT EFF +L 
Sbjct: 144 NPEMKHKVHRLARKLKEVDEDIQRHNELLNVIKRTPPAEIGELVARRRKDFTNEFFEHLH 203

Query: 206 LVADTY-DSLEDRDGISRLGTRCLSAVTAYDNTLENVETLDTAQAKFDDILNSPSIDVAC 264
            VA++Y D+ ++++ ++ LG   ++AV AYD + E+++ L+ A+ K  DI+NSPS+D AC
Sbjct: 204 TVAESYYDNPDEQNALASLGKLSIAAVQAYDTSTESIDALNAAEMKLQDIINSPSLDAAC 263

Query: 265 QKIKSLAKAKEXXXXXXXXXXXAWANAKESTTMKNEVKDIMYRLYKATKSSLRSITPKEI 324
           +KI SLA+  +           AW+ AKES  MK EVKDI+Y LY   + +L+ + PKE+
Sbjct: 264 RKIDSLAEKNQLDSALVLMITKAWSAAKESNMMKEEVKDILYHLYVTARGNLQRLMPKEV 323

Query: 325 KLLKHLLNIIDPEERFSALATAFSPGDGHEAKNPDALYTTPKELHKWIQIMLDAYNLNKE 384
           ++LK+LL+I DP+E+ SAL  AF+PGD  E  + D LYTTP+ L   ++ +L+AY+ ++E
Sbjct: 324 RILKYLLSIEDPQEQISALQDAFTPGDELEGTDVDYLYTTPEHLQSLMKTVLEAYHFSRE 383

Query: 385 ETDLREAKQLTDPIVIQRLFILRDTIEQEYM 415
            + ++EAK L  P +I ++  L+  +E++YM
Sbjct: 384 GSLVKEAKDLMHPELIAKIEQLKKLVEKKYM 414