Miyakogusa Predicted Gene

Lj2g3v1457490.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1457490.1 tr|D2V8Z4|D2V8Z4_NAEGR Predicted protein
OS=Naegleria gruberi GN=NAEGRDRAFT_31998 PE=4 SV=1,42.7,2e-16,23S RRNA
METHYLTRANSFERASE,NULL; RNA METHYLTRANSFERASE,NULL; seg,NULL; no
description,NULL,CUFF.37160.1
         (192 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G17610.1 | Symbols:  | tRNA/rRNA methyltransferase (SpoU) fam...   194   4e-50

>AT4G17610.1 | Symbols:  | tRNA/rRNA methyltransferase (SpoU) family
            protein | chr4:9805652-9814910 REVERSE LENGTH=1850
          Length = 1850

 Score =  194 bits (492), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 102/192 (53%), Positives = 130/192 (67%)

Query: 1    MEQVLKFLNDVREDLRCSMAKDVVTLRNETLKSYGDTNCMKNVSGDTEGIVLKDMSSDFQ 60
            M+ VL FLNDVREDLR SMAKDVVT++NE  K   +      +S   E  + +  S DFQ
Sbjct: 1582 MDNVLSFLNDVREDLRASMAKDVVTIKNEGFKIDEEPKRRLIMSTTDEERLSEPSSLDFQ 1641

Query: 61   KKVTLAKHNKGDNEAGFLYSNDETYRKMAEIEXXXXXXXXXXXXXXXXXXXXXASRQNCI 120
            +K+TL+KH K D  +  +  N ETY+++ E+E                     + RQ+ I
Sbjct: 1642 RKITLSKHEKQDASSTSVLRNGETYKRLFEMEKEDELVTQLLRSRSMEVERLKSGRQSLI 1701

Query: 121  LAASLLDRIPNLAGLARSCEVFGASGLAIADKNIISDKQFQLISVTAEKWVPIIELPVDS 180
            L ASL+DRIPNLAGLAR+CEVF AS LA+AD +II DKQFQLISVTAEKWVPI+E+PV+S
Sbjct: 1702 LVASLVDRIPNLAGLARTCEVFKASSLAVADASIIHDKQFQLISVTAEKWVPIMEVPVNS 1761

Query: 181  IKAYLQKKKREG 192
            +K +L+KKKREG
Sbjct: 1762 LKLFLEKKKREG 1773