Miyakogusa Predicted Gene
- Lj2g3v1455300.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v1455300.1 Non Chatacterized Hit- tr|I1K9J2|I1K9J2_SOYBN
Uncharacterized protein (Fragment) OS=Glycine max GN=G,31.05,2e-18,no
description,NULL; KH_TYPE_1,K Homology domain, type 1; Eukaryotic type
KH-domain (KH-domain type ,CUFF.37133.1
(623 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G22600.1 | Symbols: | RNA-binding KH domain-containing prote... 312 4e-85
AT1G51580.1 | Symbols: | RNA-binding KH domain-containing prote... 232 6e-61
AT5G53060.1 | Symbols: | RNA-binding KH domain-containing prote... 164 1e-40
AT5G15270.1 | Symbols: | RNA-binding KH domain-containing prote... 162 8e-40
AT5G15270.2 | Symbols: | RNA-binding KH domain-containing prote... 162 8e-40
AT5G46190.1 | Symbols: | RNA-binding KH domain-containing prote... 133 3e-31
AT4G18375.2 | Symbols: | RNA-binding KH domain-containing prote... 130 3e-30
AT5G64390.3 | Symbols: HEN4 | RNA-binding KH domain-containing p... 127 3e-29
AT5G64390.2 | Symbols: HEN4 | RNA-binding KH domain-containing p... 126 4e-29
AT5G64390.1 | Symbols: HEN4 | RNA-binding KH domain-containing p... 126 4e-29
AT5G09560.1 | Symbols: | RNA-binding KH domain-containing prote... 112 1e-24
AT1G14170.3 | Symbols: | RNA-binding KH domain-containing prote... 105 7e-23
AT1G14170.1 | Symbols: | RNA-binding KH domain-containing prote... 103 3e-22
AT1G14170.2 | Symbols: | RNA-binding KH domain-containing prote... 103 3e-22
AT4G18375.1 | Symbols: | RNA-binding KH domain-containing prote... 95 2e-19
AT4G26000.1 | Symbols: PEP | RNA-binding KH domain-containing pr... 88 1e-17
AT3G04610.1 | Symbols: FLK | RNA-binding KH domain-containing pr... 82 1e-15
AT2G03110.1 | Symbols: | RNA binding;nucleic acid binding | chr... 55 2e-07
AT5G53060.2 | Symbols: | RNA-binding KH domain-containing prote... 54 3e-07
>AT2G22600.1 | Symbols: | RNA-binding KH domain-containing protein
| chr2:9596617-9599050 FORWARD LENGTH=632
Length = 632
Score = 312 bits (800), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 226/633 (35%), Positives = 317/633 (50%), Gaps = 84/633 (13%)
Query: 52 KRPVFKILPGQIVFRLVCHAXXXXXXXXXXXXXXXQLRRETGCKIHCEDAVPGTDDRVIL 111
+RPV +LP + R+VCHA +LRRETG KIHCE V G+D V+
Sbjct: 14 RRPVIHVLPDETAIRVVCHASVIGGIIGSNGYVVSKLRRETGTKIHCESPVNGSDHWVVF 73
Query: 112 IIGSLWPRKGVALED--GEV-----------EVSNAQEASVRVFERVWELEAEK---GVN 155
I+GS + + L D GE EVS AQ A +RV ER W + A K GV
Sbjct: 74 IVGSTAVNQSILLTDRVGEFSGGEHEDWVTCEVSAAQTALIRVLERSWVVLAAKDGGGVV 133
Query: 156 RTINSEVVCKLLAHTSQIGALVGKGGKNISTIRSNTCTKIRVCPSPPCAAKDEELVLITG 215
+ E C +LA +QIGA++G GGKN+ +R N+ IRV P P C K++EL+ ITG
Sbjct: 134 DGEDEEAYCGILADRNQIGAVLGLGGKNVEWMRRNSGAMIRVLPPPICGTKNDELIQITG 193
Query: 216 ESLGVKKALVSVSHCLQDCPPL--AKAXXXXXXXXXXXXXXXXXXXHDELFPHLNSWLPS 273
+ L VKKALV VS +Q+ PL H E FP+L S
Sbjct: 194 DVLAVKKALVMVSSYIQNNAPLNGYPPPLSIKGYESLSTDGNSEDPHSEFFPNLRS---- 249
Query: 274 MEGLSINDASRQTTNSNGNFNLDS-KGAEHQVVFRILCSNNVAGSVIGKRGAIVRALENK 332
S+++A+ + SN + D E +VVF+I+ ++ VAG +IGK+G I+RAL+N+
Sbjct: 250 ---SSLSNAT-EIVASNRHLPYDGGNSTERKVVFKIIFTSVVAGGIIGKQGTIIRALQNE 305
Query: 333 TGASIIFAAPINNFAERIVTVSAIENLGSSYSPAQDAVILVFARIIEDHIGKGFLPASSV 392
TGASI AP+ ER+VTVSA ENL S YS AQ+A+ LVFAR +E + KG P
Sbjct: 306 TGASISVGAPLKVSGERVVTVSARENLESRYSHAQNALALVFARSVEIDVEKGLRPGLHN 365
Query: 393 ESPVTVRLLVASSSVNCLNGNEGQVISELKESTRADIQILHGEPV-PTASDNDVVVQITG 451
+ V +LLV S N NGN + E +T AD+ I G V S+N+VV++I G
Sbjct: 366 GAIVKTKLLVPSHFANSFNGNGNR---EAIIATGADVHISVGNQVLEWISENEVVIEIKG 422
Query: 452 GYRCVQNALHKITSRIRDNLYPNEVLAEARTN--------------SNFQVNKDIAEGNF 497
Y VQ AL ++S++R+NL P +VL E R N Q ++ A
Sbjct: 423 EYSHVQKALTHVSSKLRENLLPKKVLGEMRARVSNPYESAGGRSQIYNLQPSQQDASRGD 482
Query: 498 SAHGKSAFPLGRFMRQNAGGHGGSNSENGVLHTD-----------------LSENSERGR 540
S +A P + +R A N V+HT+ L E+ +G
Sbjct: 483 SLSVSAAVPDLKMVRSGA----EVLKSNSVMHTEVLKEVDELNDFTLPQSLLEEDLTQGM 538
Query: 541 GNML----------------ATVTNTTVEIVVSEHVFSSVYGEDGGNVDRIRQISGASVT 584
+ +V T+E+ V + S+YG DG VD ++QISGA+V
Sbjct: 539 KQLQMSSNGDVSSLPPRSKGVSVRKITLELAVEKDALGSLYGRDGTGVDNLQQISGANVD 598
Query: 585 VYDPSAGTSQGKVVISGTPDQTFAAQSLLQAFI 617
V DP+ ++ V+ISG P+Q A SL+++ +
Sbjct: 599 VKDPTG--TEATVLISGNPEQARTAMSLIESIL 629
>AT1G51580.1 | Symbols: | RNA-binding KH domain-containing protein
| chr1:19125612-19128102 FORWARD LENGTH=621
Length = 621
Score = 232 bits (592), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 202/649 (31%), Positives = 296/649 (45%), Gaps = 112/649 (17%)
Query: 51 SKRPVFKILPGQIV-FRLVCHAXXXXXXXXXXXXXXXQLRRETGCKIHCEDAVP-GTDDR 108
SKRP + V FRL+C A L+ TG KI D +P +++R
Sbjct: 6 SKRPATTATAAESVHFRLLCPATRTGAIIGKGGSVIRHLQSVTGSKIRVIDDIPVPSEER 65
Query: 109 VILII------------------GSLWPRK-------GVALEDGEVEVSNAQEASVRVFE 143
V+LII GS P++ G + D E S+AQ A +RVFE
Sbjct: 66 VVLIIAPSGKKKDESNVCDSENPGSEEPKQEKGSECAGTSGGDDEEAPSSAQMALLRVFE 125
Query: 144 R---------VWELEAEKGVNRTINSEVVCKLLAHTSQIGALVGKGGKNISTIRSNTCTK 194
R V E +KG SE +C+++ +Q+ L+ KGGK I IR ++
Sbjct: 126 RIVFGDDAATVDGDELDKG-----ESEGLCRMIVRGNQVDYLMSKGGKMIQKIREDSGAI 180
Query: 195 IRVCPS---PPCAAKDEELVLITGESLGVKKALVSVSHCLQD--CPPLAKAXXXXXXXXX 249
+R+ + PPCA + ++ + G+ VKKAL+ V++CLQ+ PP
Sbjct: 181 VRISSTDQIPPCAFPGDVVIQMNGKFSSVKKALLLVTNCLQESGAPPTWDECPFPQPGYP 240
Query: 250 XXXXXXXXXXHDELFPHLNSWLPSMEGLSINDASRQTTNSNGNFNLDSKGAEHQVVFRIL 309
H + P + N G FN E +V FR+L
Sbjct: 241 PEY-------------HSMEYHPQWDHPPPNPMPEDV----GPFNRPV--VEEEVAFRLL 281
Query: 310 CSNNVAGSVIGKRGAIVRALENKTGASIIFAAPINNFAERIVTVSAIENLGSSYSPAQDA 369
C + GS+IGK GA+VRAL+N++GASI + P ++ ERI+ +SA ENL +S AQD
Sbjct: 282 CPADKVGSLIGKGGAVVRALQNESGASIKVSDPTHDSEERIIVISARENLERRHSLAQDG 341
Query: 370 VILVFARIIEDHIGKGFLPASSVESPVTVRLLVASSSVNCLNGNEGQVISELKESTRADI 429
V+ V RI+E GF P+++ V RLLV S + L G G +ISE++ +T A I
Sbjct: 342 VMRVHNRIVE----IGFEPSAA----VVARLLVHSPYIGRLLGKGGHLISEMRRATGASI 393
Query: 430 QIL-HGEPVPTASDNDVVVQITGGYRCVQNALHKITSRIRDNLYPNEVLAEARTNS---- 484
++ + S +D +VQ+ G + VQ+AL +I R+R+ ++P + +
Sbjct: 394 RVFAKDQATKYESQHDEIVQVIGNLKTVQDALFQILCRLREAMFPGRLPFQGMGGPPPPF 453
Query: 485 --------------NFQVNKDIAE---GNF---SAHG------------KSAFPLGRFMR 512
+ + D G F HG + P+ +
Sbjct: 454 MGPYPEPPPPFGPRQYPASPDRYHSPVGPFHERHCHGPGFDRPPGPGFDRPPSPMSWTPQ 513
Query: 513 QNAGGHGGSNSENGVLHTDLSENSERGRGNMLATVTNTTVEIVVSEHVFSSVYGEDGGNV 572
GH G V H N G N + T N VEIV+ + VYGE+ N+
Sbjct: 514 PGIDGHPGGMVPPDVNHGFALRNEPIGSENPVMTSAN--VEIVIPQAYLGHVYGENCSNL 571
Query: 573 DRIRQISGASVTVYDPSAGTSQGKVVISGTPDQTFAAQSLLQAFIQSGQ 621
+ I+Q+SGA+V V+DP AGT++G VV+SGT DQ AQSLL AFI GQ
Sbjct: 572 NYIKQVSGANVVVHDPKAGTTEGLVVVSGTSDQAHFAQSLLHAFILCGQ 620
>AT5G53060.1 | Symbols: | RNA-binding KH domain-containing protein
| chr5:21515355-21518197 FORWARD LENGTH=652
Length = 652
Score = 164 bits (416), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 171/608 (28%), Positives = 269/608 (44%), Gaps = 80/608 (13%)
Query: 65 FRLVCHAXXXXXXXXXXXXXXXQLRRETGCKIHCEDAVPGTDDRVILIIGSLWPRKGVAL 124
+R++CH +R+ TG I+ + VPG +R+I I + R+
Sbjct: 70 YRILCHDAKAGGVIGKSGTIIKSIRQHTGAWINVHELVPGDAERIIEISDNR--RRD--- 124
Query: 125 EDGEV-EVSNAQEASVRVFERVWELEAEKGVNRTINSE-------------VVCKLLAHT 170
DG + S AQEA V +R+ E EA+ G E VV +L+
Sbjct: 125 PDGRMPSFSPAQEALFSVHDRILESEAQFGYGGPPPEEEEDYGGVRPGGGRVVTRLVVSR 184
Query: 171 SQIGALVGKGGKNISTIRSNTCTKIRVCPS----PPCAAKDEELVLITGESLGVKKALVS 226
+G L+GKGGK I +R T T IR+ P P C + EE+V I GE VK AL
Sbjct: 185 MHVGCLLGKGGKIIEQMRIETKTHIRILPRESNLPRCVSLSEEIVQIVGELNAVKNALAI 244
Query: 227 VSHCLQDCPPLAKAXXXXXXXXXXXXXXXXXXXHDELFPHL----NSWLPSMEGLSINDA 282
VS L++ ++ D+ P L + P + N +
Sbjct: 245 VSSRLRESQHRDRSNFQGRSHSPERSFAAAG---DDYMPQLRRQSSDRFPRGNFRNNNFS 301
Query: 283 SRQTTNSNGNFNLDSKGA-------EHQVVFRILCSNNVAGSVIGKRGAIVRALENKTGA 335
SRQ+ N+ ++ ++VF+ILC + V+G+ I+ L+N+ G
Sbjct: 302 SRQS-----NYAEEAPAVPVGENVYSEELVFQILCPADKIVRVVGESQGIIDLLQNEIGV 356
Query: 336 SIIFAAPINNFAERIVTVSAIENLGSSYSPAQDAVILVFARIIEDHIGKGFLPASSVESP 395
+ + P+ E+I+T+S+ E + PAQ+A++ + +II+ +P ++
Sbjct: 357 DVRVSDPVAGSDEQIITISSEEAPDDPFFPAQEALLHIQTQIID------LIPDK--DNL 408
Query: 396 VTVRLLVASSSVNCLNGNEGQVISELKESTRADIQILHGEPVPT-ASDNDVVVQITGGYR 454
+T RLLV S CL G G V SE+ T +QIL E +P AS NDVV+QITG R
Sbjct: 409 ITTRLLVPSRDSICLEGKAGSV-SEISRLTGTSVQILAREEIPRCASINDVVIQITGEIR 467
Query: 455 CVQNALHKITSRIRDNLY-----------------PNE----VLAEARTNSNFQVNKDIA 493
+ AL ++T +R +++ P E V+ A +N+ Q +
Sbjct: 468 AAREALVELTLLLRSHMFKELSQKETPPASTSTTGPLEGVAGVMEVASSNNTIQSREGPT 527
Query: 494 EGNFSAHGKSAFPLGRFMRQNAGGHGGSNSENGVLHTDLSENSERGRGNMLATVTNTTVE 553
N + S L +F SE+ ++ + R + VT +T+E
Sbjct: 528 SSNLNLQQVSTI-LPQFKEGFGSVAKAGESEH---REEVPVTTSR---MAVPLVTRSTLE 580
Query: 554 IVVSEHVFSSVYGEDGGNVDRIRQISGASVTVYDPSAGTSQGKVVISGTPDQTFAAQSLL 613
+V+ E V + + + +I + SGASVT+ + +Q + ISGTP+Q AQSLL
Sbjct: 581 VVLPEAVVPKLVTKSRNKLAQISEWSGASVTIVEDRPEETQNIIRISGTPEQAERAQSLL 640
Query: 614 QAFIQSGQ 621
Q FI S Q
Sbjct: 641 QGFILSIQ 648
>AT5G15270.1 | Symbols: | RNA-binding KH domain-containing protein
| chr5:4958738-4960947 FORWARD LENGTH=548
Length = 548
Score = 162 bits (409), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 138/438 (31%), Positives = 205/438 (46%), Gaps = 25/438 (5%)
Query: 45 SKRNYK-SKRPVFKILPGQIVFRLVCHAXXXXXXXXXXXXXXXQLRRETGCKIHCEDAVP 103
SKR Y+ R I VFR +C QLR +T KI +A+P
Sbjct: 31 SKRRYRGDDRDSLVIDRDDTVFRYLCPVKKIGSVIGRGGDIVKQLRNDTRSKIRIGEAIP 90
Query: 104 GTDDRVILIIGSLWPRKGVALEDGEVEVSNAQEASVRVFERVWELEAEKGVNRTINSEVV 163
G D+RVI I + A DGE +S AQ+A R+ +RV +A + +V
Sbjct: 91 GCDERVITIYSP--SDETNAFGDGEKVLSPAQDALFRIHDRVVADDARSEDSPEGEKQVT 148
Query: 164 CKLLAHTSQIGALVGKGGKNISTIRSNTCTKIRVCPS---PPCAAKDEELVLITGESLGV 220
KLL + QIG ++G+GG+ + IRS T +IR+ P CA +EL+ I+GE L V
Sbjct: 149 AKLLVPSDQIGCILGRGGQIVQNIRSETGAQIRIVKDRNMPLCALNSDELIQISGEVLIV 208
Query: 221 KKALVSVSHCLQDCPPLAKAXXXXXXXXXXXXXXXXXXXHDELFPHLNSWLPSM--EGLS 278
KKAL+ ++ L + P ++ P L P M G
Sbjct: 209 KKALLQIASRLHENPSRSQNLLSSSGGYPAGSLMSHAGG-----PRLVGLAPLMGSYGRD 263
Query: 279 INDASRQTTNSNGNFNLDSKGAEHQVVFRILCSNNVAGSVIGKRGAIVRALENKTGASII 338
D SR N D E R++ SVIGK GA++ L +T A+I
Sbjct: 264 AGDWSRPLYQPPRN---DPPATE--FFIRLVSPVENIASVIGKGGALINQLRQETRATIK 318
Query: 339 FAAPINNFAERIVTVSAIENLGSSYSPAQDAVILVFARIIEDHIGKGFLPASSVESPVTV 398
+ + ++T+SA E +YSP +AV+ + + D + + S T
Sbjct: 319 VDSSRTEGNDCLITISAREVFEDAYSPTIEAVMRLQPK-CSDKVER-----DSGLVSFTT 372
Query: 399 RLLVASSSVNCLNGNEGQVISELKESTRADIQILHGEPVP-TASDNDVVVQITGGYRCVQ 457
RLLV SS + C+ G G +I+E++ T+A+I+IL E +P ASD+D +VQI+G +
Sbjct: 373 RLLVPSSRIGCILGKGGAIITEMRRMTKANIRILGKENLPKVASDDDEMVQISGELDVAK 432
Query: 458 NALHKITSRIRDNLYPNE 475
AL +ITSR+R N++ E
Sbjct: 433 EALIQITSRLRANVFDRE 450
>AT5G15270.2 | Symbols: | RNA-binding KH domain-containing protein
| chr5:4958738-4960947 FORWARD LENGTH=548
Length = 548
Score = 162 bits (409), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 138/438 (31%), Positives = 205/438 (46%), Gaps = 25/438 (5%)
Query: 45 SKRNYK-SKRPVFKILPGQIVFRLVCHAXXXXXXXXXXXXXXXQLRRETGCKIHCEDAVP 103
SKR Y+ R I VFR +C QLR +T KI +A+P
Sbjct: 31 SKRRYRGDDRDSLVIDRDDTVFRYLCPVKKIGSVIGRGGDIVKQLRNDTRSKIRIGEAIP 90
Query: 104 GTDDRVILIIGSLWPRKGVALEDGEVEVSNAQEASVRVFERVWELEAEKGVNRTINSEVV 163
G D+RVI I + A DGE +S AQ+A R+ +RV +A + +V
Sbjct: 91 GCDERVITIYSP--SDETNAFGDGEKVLSPAQDALFRIHDRVVADDARSEDSPEGEKQVT 148
Query: 164 CKLLAHTSQIGALVGKGGKNISTIRSNTCTKIRVCPS---PPCAAKDEELVLITGESLGV 220
KLL + QIG ++G+GG+ + IRS T +IR+ P CA +EL+ I+GE L V
Sbjct: 149 AKLLVPSDQIGCILGRGGQIVQNIRSETGAQIRIVKDRNMPLCALNSDELIQISGEVLIV 208
Query: 221 KKALVSVSHCLQDCPPLAKAXXXXXXXXXXXXXXXXXXXHDELFPHLNSWLPSM--EGLS 278
KKAL+ ++ L + P ++ P L P M G
Sbjct: 209 KKALLQIASRLHENPSRSQNLLSSSGGYPAGSLMSHAGG-----PRLVGLAPLMGSYGRD 263
Query: 279 INDASRQTTNSNGNFNLDSKGAEHQVVFRILCSNNVAGSVIGKRGAIVRALENKTGASII 338
D SR N D E R++ SVIGK GA++ L +T A+I
Sbjct: 264 AGDWSRPLYQPPRN---DPPATE--FFIRLVSPVENIASVIGKGGALINQLRQETRATIK 318
Query: 339 FAAPINNFAERIVTVSAIENLGSSYSPAQDAVILVFARIIEDHIGKGFLPASSVESPVTV 398
+ + ++T+SA E +YSP +AV+ + + D + + S T
Sbjct: 319 VDSSRTEGNDCLITISAREVFEDAYSPTIEAVMRLQPK-CSDKVER-----DSGLVSFTT 372
Query: 399 RLLVASSSVNCLNGNEGQVISELKESTRADIQILHGEPVP-TASDNDVVVQITGGYRCVQ 457
RLLV SS + C+ G G +I+E++ T+A+I+IL E +P ASD+D +VQI+G +
Sbjct: 373 RLLVPSSRIGCILGKGGAIITEMRRMTKANIRILGKENLPKVASDDDEMVQISGELDVAK 432
Query: 458 NALHKITSRIRDNLYPNE 475
AL +ITSR+R N++ E
Sbjct: 433 EALIQITSRLRANVFDRE 450
>AT5G46190.1 | Symbols: | RNA-binding KH domain-containing protein
| chr5:18723435-18725834 REVERSE LENGTH=644
Length = 644
Score = 133 bits (335), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 117/443 (26%), Positives = 208/443 (46%), Gaps = 45/443 (10%)
Query: 63 IVFRLVCHAXXXXXXXXXXXXXXXQLRRETGCKIHCEDAVPGTDDRVILIIGSLWPRKGV 122
+V+R++C + +R+ET +I D PG +RVI I S+ +K +
Sbjct: 44 VVYRILCPSGVMGSVIGKSGKVINLIRQETRARIKVVDPFPGCSERVITIFCSVSEKKDI 103
Query: 123 A-LEDGEVEVS----NAQEASVRVFERVWELEAEKGVNRTINSEVV--CKLLAHTSQIGA 175
+E E++ S +AQ A ++V + + A N I+ + C+LL +SQ
Sbjct: 104 VDIEYSELDYSVPLCSAQAALLKVHDAIVASLATAAENTKIDRDDFRECRLLVPSSQCSI 163
Query: 176 LVGKGGKNISTIRSNTCTKIRVC------PSPPCAAKDEELVLITGESLGVKKALVSVSH 229
++GK G I IR T ++V PS CA + +V+I+GE+ VKKAL +VS
Sbjct: 164 VIGKSGSIIKNIRGRTRANVKVVSKDVSDPSHTCAMDFDNIVMISGETESVKKALFAVSA 223
Query: 230 CLQDCPPLAK-----------AXXXXXXXXXXXXXXXXXXXHDELFPH---LNSWLPSM- 274
+ P + A D +F H ++S++ ++
Sbjct: 224 IMYKVSPREQIPLDTTVQEVPASIIIPSDLSIYPQAGLYPSQDSIFQHGANVSSFIGTLP 283
Query: 275 EGLSINDASRQTTNSNGNF----NLDSKGAEHQVVFRILCSNNVAGSVIGKRGAIVRALE 330
+G N A+ S ++ +++CS++ G VIGK G ++ +
Sbjct: 284 QGYGENAANPVPVFSASALPVVHGFGGSSRSEKLAIKVICSSSKIGRVIGKGGLTIKGIR 343
Query: 331 NKTGASI-IFAAPINNFAERIVTVSAIENLGSSYSPAQDAVILVFARIIEDHIGKGFLPA 389
+G+ I + + N+ + ++TV+A E+ S A +AV+L+ +I ++
Sbjct: 344 QASGSHIEVNDSRTNHDDDCVITVTATESPDDLKSMAVEAVLLLQEKINDED-------- 395
Query: 390 SSVESPVTVRLLVASSSVNCLNGNEGQVISELKESTRADIQILHGEPVPTASD-NDVVVQ 448
E V ++LLV+S + C+ G G +ISE+++ T+ADI I G P +D ND +V+
Sbjct: 396 ---EDKVKMQLLVSSKVIGCIIGKSGSIISEIRKRTKADIHISKGNNTPKCADPNDELVE 452
Query: 449 ITGGYRCVQNALHKITSRIRDNL 471
I+G V++AL +I R+RD++
Sbjct: 453 ISGEVSNVRDALIQIVLRLRDDV 475
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
Query: 549 NTTVEIVVSEHVFSSVYGEDGGNVDRIRQISGASVTVYDPSAGTSQGKV-VISGTPDQTF 607
+TT+E+ + + V G GGN+D IR+ISGA + + D S + G+V +ISGT +Q
Sbjct: 573 STTMEVRIPANAVGKVMGRGGGNLDNIRRISGAMIEISD-SKNSHGGRVALISGTSEQKR 631
Query: 608 AAQSLLQAFIQS 619
A++L QAFI S
Sbjct: 632 TAENLFQAFIMS 643
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 77/175 (44%), Gaps = 20/175 (11%)
Query: 62 QIVFRLVCHAXXXXXXXXXXXXXXXQLRRETGCKIHCEDAVPGTDDRVILIIGSLWPRKG 121
++ +++C + +R+ +G I D+ DD ++ +
Sbjct: 316 KLAIKVICSSSKIGRVIGKGGLTIKGIRQASGSHIEVNDSRTNHDDDCVITV-------- 367
Query: 122 VALEDGEVEVSNAQEASVRVFERVWELEAEKGVNRTINSEVVCKLLAHTSQIGALVGKGG 181
A E + S A EA + + E++ + + +K V +LL + IG ++GK G
Sbjct: 368 TATESPDDLKSMAVEAVLLLQEKINDEDEDK---------VKMQLLVSSKVIGCIIGKSG 418
Query: 182 KNISTIRSNTCTKIRVCP---SPPCAAKDEELVLITGESLGVKKALVSVSHCLQD 233
IS IR T I + +P CA ++ELV I+GE V+ AL+ + L+D
Sbjct: 419 SIISEIRKRTKADIHISKGNNTPKCADPNDELVEISGEVSNVRDALIQIVLRLRD 473
>AT4G18375.2 | Symbols: | RNA-binding KH domain-containing protein
| chr4:10152825-10155125 FORWARD LENGTH=606
Length = 606
Score = 130 bits (326), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 166/630 (26%), Positives = 276/630 (43%), Gaps = 92/630 (14%)
Query: 43 SSSKRNYKSKRPVFKILPGQ-IVFRLVCHAXXXXXXXXXXXXXXXQLRRETGCKIHCEDA 101
S S RN K + KI + +V+R++C +R T KI D
Sbjct: 15 SESNRNQKRRISHDKINRDELVVYRILCPIDVVGGVIGKSGKVINAIRHNTKAKIKVFDQ 74
Query: 102 VPGTDDRVILIIGSLWPRKG-VALEDGEVE-VSNAQEASVRVFERVWELEAEKG----VN 155
+ G RVI I S+ ++ + E E + AQ+A ++V++ + + E V+
Sbjct: 75 LHGCSQRVITIYCSVKEKQEEIGFTKSENEPLCCAQDALLKVYDAIVASDEENNTKTNVD 134
Query: 156 RTINSEVVCKLLAHTSQIGALVGKGGKNISTIRSNTCTKIRVC------PSPPCAAKDEE 209
R N E C+LL SQ +L+GK G+NI IR T ++V PS CA + +
Sbjct: 135 RDDNKE--CRLLVPFSQSSSLIGKAGENIKRIRRRTRASVKVVSKDVSDPSHVCAMEYDN 192
Query: 210 LVLITGESLGVKKALVSVSHCL---------------QDCPPLAKAXXXXXXXXXXXXXX 254
+V+I+GE VK+AL +VS + QD P A
Sbjct: 193 VVVISGEPESVKQALFAVSAIMYKINPRENIPLDSTSQDVPA-ASVIVPSDLSNSVYPQT 251
Query: 255 XXXXXHDELFPHLNSWLPS-MEGLSIND-ASRQTTNSN------------GNFNLDSKGA 300
D + + +PS LS++D T +N F S+
Sbjct: 252 GFYSNQDHILQQ-GAGVPSYFNALSVSDFQGYAETAANPVPVFASSLPVTHGFGGSSRSE 310
Query: 301 EHQVVFRILCSNNVAGSVIGKRGAIVRALENKTGASIIFAAPINNFA------ERIVTVS 354
E +VF++LC VIGK G+ ++ + +G+ I +N+ E ++ V+
Sbjct: 311 E--LVFKVLCPLCNIMRVIGKGGSTIKRIREASGSCI----EVNDSRTKCGDDECVIIVT 364
Query: 355 AIENLGSSYSPAQDAVILVFARIIEDHIGKGFLPASSVESPVTVRLLVASSSVNCLNGNE 414
A E+ S A +AV+L I D + V ++LLV+S + C+ G
Sbjct: 365 ATESPDDMKSMAVEAVLL-LQEYINDEDAEN----------VKMQLLVSSKVIGCVIGKS 413
Query: 415 GQVISELKESTRADIQILHGEPVPTASDNDVVVQITGGYRCVQNALHKITSRIRDNLYPN 474
G VI+E+++ T A+I I G+ D +V+++G V++AL +I R+R+++ +
Sbjct: 414 GSVINEIRKRTNANICISKGK-------KDDLVEVSGEVSSVRDALIQIVLRLREDVLGD 466
Query: 475 EVLAEARTNSNFQVNKDIAEGNFSAHGKSAFPLGRFMRQNA---GGHGGSNSENGVLHTD 531
+ R N G+ +A + L FM A G HG + G
Sbjct: 467 KDSVATRKPPARTDNCSFLSGSSNA----GYTLPSFMSSMASTSGFHGYGSFPAG--DNV 520
Query: 532 LSENSERGRGNMLATVTNTTVEIVVSEHVFSSVYGEDGGNVDRIRQISGASVTVYDPSAG 591
L G + ++ + +EI++ H S V G+ GGN++ IR+ISGA + + ++
Sbjct: 521 LGSTGPYSYGRLPSS---SALEILIPAHAMSKVMGKGGGNLENIRRISGAMIEI--SASK 575
Query: 592 TSQGK--VVISGTPDQTFAAQSLLQAFIQS 619
TS G ++SGT +Q A++L+QAF+ S
Sbjct: 576 TSHGDHIALLSGTLEQMRCAENLVQAFVMS 605
>AT5G64390.3 | Symbols: HEN4 | RNA-binding KH domain-containing
protein | chr5:25743442-25747380 FORWARD LENGTH=866
Length = 866
Score = 127 bits (318), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 72/174 (41%), Positives = 110/174 (63%), Gaps = 3/174 (1%)
Query: 304 VVFRILCSNNVAGSVIGKRGAIVRALENKTGASIIFAAPINNFAERIVTVSAIENLGSSY 363
VVF+ILCS AG VIG G +VR L ++TGA I +++ ER++ V+A EN
Sbjct: 452 VVFKILCSTENAGGVIGTGGKVVRMLHSETGAFINVGNTLDDCEERLIAVTASENPECQS 511
Query: 364 SPAQDAVILVFARIIEDHIGKGFLPASSVESPVTVRLLVASSSVNCLNGNEGQVISELKE 423
SPAQ A++L+F+R+ E + + + S +T RL+V +S + C+ G G ++SE+++
Sbjct: 512 SPAQKAIMLIFSRLFE--LATNKILDNGPRSSITARLVVPTSQIGCVLGKGGVIVSEMRK 569
Query: 424 STRADIQILHGEPVPTA-SDNDVVVQITGGYRCVQNALHKITSRIRDNLYPNEV 476
+T A IQIL E P S+ND VVQITG + V+ A+ ITSR+RD+++ N +
Sbjct: 570 TTGAAIQILKVEQNPKCISENDQVVQITGEFPNVREAIFHITSRLRDSVFSNSM 623
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 72/193 (37%), Positives = 101/193 (52%), Gaps = 22/193 (11%)
Query: 61 GQIVFRLVCHAXXXXXXXXXXXXXXXQLRRETGCKIHCEDAVPGTDDRVILIIGSLWPRK 120
G FRL+C QL++ TG KI E+ G+ DRVI II +
Sbjct: 45 GHAAFRLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEPPSGSPDRVITIIAQADSKS 104
Query: 121 GVAL------------EDGEVEVSNAQEASVRVFERVWELEAEKGVNRTINSEVVCKLLA 168
V L ++ EVEVS AQ A ++VFE + EA+ + VVC+LL
Sbjct: 105 RVKLGANNNGNAEGEKKEEEVEVSKAQGALIKVFE-LLAAEAD-------SDTVVCRLLT 156
Query: 169 HTSQIGALVGKGGKNISTIRSNTCTKI--RVCPSPPCAAKDEELVLITGESLGVKKALVS 226
+S GA++GKGG+ + +IR T KI R+ P CA D+E+V + G ++ VKKALVS
Sbjct: 157 ESSHAGAVIGKGGQMVGSIRKETGCKISIRIENLPICADTDDEMVEVEGNAIAVKKALVS 216
Query: 227 VSHCLQDCPPLAK 239
+S CLQ+C + K
Sbjct: 217 ISRCLQNCQSIDK 229
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/98 (54%), Positives = 67/98 (68%), Gaps = 4/98 (4%)
Query: 526 GVLHTDLSENSERGRGNMLATVTNTTVEIVVSEHVFSSVYGEDGGNVDRIRQISGASVTV 585
G LH L +S G+ A VTNTTVEI V + S VYGE G N++++RQISGA V +
Sbjct: 765 GSLHARLVFSS----GHKSAIVTNTTVEIRVPANAMSFVYGEQGYNLEQLRQISGARVII 820
Query: 586 YDPSAGTSQGKVVISGTPDQTFAAQSLLQAFIQSGQVS 623
++P GTS +VISGTPDQT AAQ+LL AFI +G+ S
Sbjct: 821 HEPPLGTSDRIIVISGTPDQTQAAQNLLHAFILTGETS 858
Score = 76.6 bits (187), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 90/174 (51%), Gaps = 12/174 (6%)
Query: 63 IVFRLVCHAXXXXXXXXXXXXXXXQLRRETGCKIHCEDAVPGTDDRVILIIGSLWPRKGV 122
+VF+++C L ETG I+ + + ++R+I + S
Sbjct: 452 VVFKILCSTENAGGVIGTGGKVVRMLHSETGAFINVGNTLDDCEERLIAVTAS------- 504
Query: 123 ALEDGEVEVSNAQEASVRVFERVWELEAEKGVNRTINSEVVCKLLAHTSQIGALVGKGGK 182
E+ E + S AQ+A + +F R++EL K ++ S + +L+ TSQIG ++GKGG
Sbjct: 505 --ENPECQSSPAQKAIMLIFSRLFELATNKILDNGPRSSITARLVVPTSQIGCVLGKGGV 562
Query: 183 NISTIRSNTCTKIRVCP---SPPCAAKDEELVLITGESLGVKKALVSVSHCLQD 233
+S +R T I++ +P C ++++++V ITGE V++A+ ++ L+D
Sbjct: 563 IVSEMRKTTGAAIQILKVEQNPKCISENDQVVQITGEFPNVREAIFHITSRLRD 616
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 83/184 (45%), Gaps = 33/184 (17%)
Query: 303 QVVFRILCSNNVAGSVIGKRGAIVRALENKTGASIIFAAPINNFAERIVTVSAIEN---- 358
FR+LC + G+VIGK G +++ L+ TGA I P + +R++T+ A +
Sbjct: 46 HAAFRLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEPPSGSPDRVITIIAQADSKSR 105
Query: 359 --LGSS---------------YSPAQDAVILVFARIIEDHIGKGFLPASSVESPVTVRLL 401
LG++ S AQ A+I VF L A + V RLL
Sbjct: 106 VKLGANNNGNAEGEKKEEEVEVSKAQGALIKVFE----------LLAAEADSDTVVCRLL 155
Query: 402 VASSSVNCLNGNEGQVISELKESTRADIQILHGEPVPTASD-NDVVVQITGGYRCVQNAL 460
SS + G GQ++ +++ T I I E +P +D +D +V++ G V+ AL
Sbjct: 156 TESSHAGAVIGKGGQMVGSIRKETGCKISI-RIENLPICADTDDEMVEVEGNAIAVKKAL 214
Query: 461 HKIT 464
I+
Sbjct: 215 VSIS 218
>AT5G64390.2 | Symbols: HEN4 | RNA-binding KH domain-containing
protein | chr5:25743442-25746742 FORWARD LENGTH=824
Length = 824
Score = 126 bits (317), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 72/174 (41%), Positives = 110/174 (63%), Gaps = 3/174 (1%)
Query: 304 VVFRILCSNNVAGSVIGKRGAIVRALENKTGASIIFAAPINNFAERIVTVSAIENLGSSY 363
VVF+ILCS AG VIG G +VR L ++TGA I +++ ER++ V+A EN
Sbjct: 452 VVFKILCSTENAGGVIGTGGKVVRMLHSETGAFINVGNTLDDCEERLIAVTASENPECQS 511
Query: 364 SPAQDAVILVFARIIEDHIGKGFLPASSVESPVTVRLLVASSSVNCLNGNEGQVISELKE 423
SPAQ A++L+F+R+ E + + + S +T RL+V +S + C+ G G ++SE+++
Sbjct: 512 SPAQKAIMLIFSRLFE--LATNKILDNGPRSSITARLVVPTSQIGCVLGKGGVIVSEMRK 569
Query: 424 STRADIQILHGEPVPTA-SDNDVVVQITGGYRCVQNALHKITSRIRDNLYPNEV 476
+T A IQIL E P S+ND VVQITG + V+ A+ ITSR+RD+++ N +
Sbjct: 570 TTGAAIQILKVEQNPKCISENDQVVQITGEFPNVREAIFHITSRLRDSVFSNSM 623
Score = 100 bits (250), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 72/193 (37%), Positives = 101/193 (52%), Gaps = 22/193 (11%)
Query: 61 GQIVFRLVCHAXXXXXXXXXXXXXXXQLRRETGCKIHCEDAVPGTDDRVILIIGSLWPRK 120
G FRL+C QL++ TG KI E+ G+ DRVI II +
Sbjct: 45 GHAAFRLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEPPSGSPDRVITIIAQADSKS 104
Query: 121 GVAL------------EDGEVEVSNAQEASVRVFERVWELEAEKGVNRTINSEVVCKLLA 168
V L ++ EVEVS AQ A ++VFE + EA+ + VVC+LL
Sbjct: 105 RVKLGANNNGNAEGEKKEEEVEVSKAQGALIKVFE-LLAAEAD-------SDTVVCRLLT 156
Query: 169 HTSQIGALVGKGGKNISTIRSNTCTKI--RVCPSPPCAAKDEELVLITGESLGVKKALVS 226
+S GA++GKGG+ + +IR T KI R+ P CA D+E+V + G ++ VKKALVS
Sbjct: 157 ESSHAGAVIGKGGQMVGSIRKETGCKISIRIENLPICADTDDEMVEVEGNAIAVKKALVS 216
Query: 227 VSHCLQDCPPLAK 239
+S CLQ+C + K
Sbjct: 217 ISRCLQNCQSIDK 229
Score = 76.3 bits (186), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 90/174 (51%), Gaps = 12/174 (6%)
Query: 63 IVFRLVCHAXXXXXXXXXXXXXXXQLRRETGCKIHCEDAVPGTDDRVILIIGSLWPRKGV 122
+VF+++C L ETG I+ + + ++R+I + S
Sbjct: 452 VVFKILCSTENAGGVIGTGGKVVRMLHSETGAFINVGNTLDDCEERLIAVTAS------- 504
Query: 123 ALEDGEVEVSNAQEASVRVFERVWELEAEKGVNRTINSEVVCKLLAHTSQIGALVGKGGK 182
E+ E + S AQ+A + +F R++EL K ++ S + +L+ TSQIG ++GKGG
Sbjct: 505 --ENPECQSSPAQKAIMLIFSRLFELATNKILDNGPRSSITARLVVPTSQIGCVLGKGGV 562
Query: 183 NISTIRSNTCTKIRVCP---SPPCAAKDEELVLITGESLGVKKALVSVSHCLQD 233
+S +R T I++ +P C ++++++V ITGE V++A+ ++ L+D
Sbjct: 563 IVSEMRKTTGAAIQILKVEQNPKCISENDQVVQITGEFPNVREAIFHITSRLRD 616
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 83/184 (45%), Gaps = 33/184 (17%)
Query: 303 QVVFRILCSNNVAGSVIGKRGAIVRALENKTGASIIFAAPINNFAERIVTVSAIEN---- 358
FR+LC + G+VIGK G +++ L+ TGA I P + +R++T+ A +
Sbjct: 46 HAAFRLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEPPSGSPDRVITIIAQADSKSR 105
Query: 359 --LGSS---------------YSPAQDAVILVFARIIEDHIGKGFLPASSVESPVTVRLL 401
LG++ S AQ A+I VF L A + V RLL
Sbjct: 106 VKLGANNNGNAEGEKKEEEVEVSKAQGALIKVFE----------LLAAEADSDTVVCRLL 155
Query: 402 VASSSVNCLNGNEGQVISELKESTRADIQILHGEPVPTASD-NDVVVQITGGYRCVQNAL 460
SS + G GQ++ +++ T I I E +P +D +D +V++ G V+ AL
Sbjct: 156 TESSHAGAVIGKGGQMVGSIRKETGCKISI-RIENLPICADTDDEMVEVEGNAIAVKKAL 214
Query: 461 HKIT 464
I+
Sbjct: 215 VSIS 218
>AT5G64390.1 | Symbols: HEN4 | RNA-binding KH domain-containing
protein | chr5:25743442-25747380 FORWARD LENGTH=857
Length = 857
Score = 126 bits (317), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 72/174 (41%), Positives = 110/174 (63%), Gaps = 3/174 (1%)
Query: 304 VVFRILCSNNVAGSVIGKRGAIVRALENKTGASIIFAAPINNFAERIVTVSAIENLGSSY 363
VVF+ILCS AG VIG G +VR L ++TGA I +++ ER++ V+A EN
Sbjct: 452 VVFKILCSTENAGGVIGTGGKVVRMLHSETGAFINVGNTLDDCEERLIAVTASENPECQS 511
Query: 364 SPAQDAVILVFARIIEDHIGKGFLPASSVESPVTVRLLVASSSVNCLNGNEGQVISELKE 423
SPAQ A++L+F+R+ E + + + S +T RL+V +S + C+ G G ++SE+++
Sbjct: 512 SPAQKAIMLIFSRLFE--LATNKILDNGPRSSITARLVVPTSQIGCVLGKGGVIVSEMRK 569
Query: 424 STRADIQILHGEPVPTA-SDNDVVVQITGGYRCVQNALHKITSRIRDNLYPNEV 476
+T A IQIL E P S+ND VVQITG + V+ A+ ITSR+RD+++ N +
Sbjct: 570 TTGAAIQILKVEQNPKCISENDQVVQITGEFPNVREAIFHITSRLRDSVFSNSM 623
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 72/193 (37%), Positives = 101/193 (52%), Gaps = 22/193 (11%)
Query: 61 GQIVFRLVCHAXXXXXXXXXXXXXXXQLRRETGCKIHCEDAVPGTDDRVILIIGSLWPRK 120
G FRL+C QL++ TG KI E+ G+ DRVI II +
Sbjct: 45 GHAAFRLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEPPSGSPDRVITIIAQADSKS 104
Query: 121 GVAL------------EDGEVEVSNAQEASVRVFERVWELEAEKGVNRTINSEVVCKLLA 168
V L ++ EVEVS AQ A ++VFE + EA+ + VVC+LL
Sbjct: 105 RVKLGANNNGNAEGEKKEEEVEVSKAQGALIKVFE-LLAAEAD-------SDTVVCRLLT 156
Query: 169 HTSQIGALVGKGGKNISTIRSNTCTKI--RVCPSPPCAAKDEELVLITGESLGVKKALVS 226
+S GA++GKGG+ + +IR T KI R+ P CA D+E+V + G ++ VKKALVS
Sbjct: 157 ESSHAGAVIGKGGQMVGSIRKETGCKISIRIENLPICADTDDEMVEVEGNAIAVKKALVS 216
Query: 227 VSHCLQDCPPLAK 239
+S CLQ+C + K
Sbjct: 217 ISRCLQNCQSIDK 229
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/85 (57%), Positives = 62/85 (72%)
Query: 539 GRGNMLATVTNTTVEIVVSEHVFSSVYGEDGGNVDRIRQISGASVTVYDPSAGTSQGKVV 598
G G+ A VTNTTVEI V + S VYGE G N++++RQISGA V +++P GTS +V
Sbjct: 765 GSGHKSAIVTNTTVEIRVPANAMSFVYGEQGYNLEQLRQISGARVIIHEPPLGTSDRIIV 824
Query: 599 ISGTPDQTFAAQSLLQAFIQSGQVS 623
ISGTPDQT AAQ+LL AFI +G+ S
Sbjct: 825 ISGTPDQTQAAQNLLHAFILTGETS 849
Score = 76.3 bits (186), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 90/174 (51%), Gaps = 12/174 (6%)
Query: 63 IVFRLVCHAXXXXXXXXXXXXXXXQLRRETGCKIHCEDAVPGTDDRVILIIGSLWPRKGV 122
+VF+++C L ETG I+ + + ++R+I + S
Sbjct: 452 VVFKILCSTENAGGVIGTGGKVVRMLHSETGAFINVGNTLDDCEERLIAVTAS------- 504
Query: 123 ALEDGEVEVSNAQEASVRVFERVWELEAEKGVNRTINSEVVCKLLAHTSQIGALVGKGGK 182
E+ E + S AQ+A + +F R++EL K ++ S + +L+ TSQIG ++GKGG
Sbjct: 505 --ENPECQSSPAQKAIMLIFSRLFELATNKILDNGPRSSITARLVVPTSQIGCVLGKGGV 562
Query: 183 NISTIRSNTCTKIRVCP---SPPCAAKDEELVLITGESLGVKKALVSVSHCLQD 233
+S +R T I++ +P C ++++++V ITGE V++A+ ++ L+D
Sbjct: 563 IVSEMRKTTGAAIQILKVEQNPKCISENDQVVQITGEFPNVREAIFHITSRLRD 616
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 83/184 (45%), Gaps = 33/184 (17%)
Query: 303 QVVFRILCSNNVAGSVIGKRGAIVRALENKTGASIIFAAPINNFAERIVTVSAIEN---- 358
FR+LC + G+VIGK G +++ L+ TGA I P + +R++T+ A +
Sbjct: 46 HAAFRLLCPLSHVGAVIGKSGNVIKQLQQSTGAKIRVEEPPSGSPDRVITIIAQADSKSR 105
Query: 359 --LGSS---------------YSPAQDAVILVFARIIEDHIGKGFLPASSVESPVTVRLL 401
LG++ S AQ A+I VF L A + V RLL
Sbjct: 106 VKLGANNNGNAEGEKKEEEVEVSKAQGALIKVFE----------LLAAEADSDTVVCRLL 155
Query: 402 VASSSVNCLNGNEGQVISELKESTRADIQILHGEPVPTASD-NDVVVQITGGYRCVQNAL 460
SS + G GQ++ +++ T I I E +P +D +D +V++ G V+ AL
Sbjct: 156 TESSHAGAVIGKGGQMVGSIRKETGCKISI-RIENLPICADTDDEMVEVEGNAIAVKKAL 214
Query: 461 HKIT 464
I+
Sbjct: 215 VSIS 218
>AT5G09560.1 | Symbols: | RNA-binding KH domain-containing protein
| chr5:2967170-2969655 FORWARD LENGTH=612
Length = 612
Score = 112 bits (279), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 143/547 (26%), Positives = 220/547 (40%), Gaps = 117/547 (21%)
Query: 132 SNAQEASVRVFERVWELEAEKGVNRTINSEVVCKLLAHTSQIGALVGKGGKNISTIRSNT 191
S AQ A +RVFE + +S V C LL S + ++GK G+ + I T
Sbjct: 114 SRAQYALIRVFEAL-------NFGDCTSSTVSCNLLMEGSHVVTVIGKNGELMQRILEET 166
Query: 192 -C-TKIRVCPSPPCAAKDEELVLITGESL-GVKKALVSVSHCLQDCPPLAKAXXXXXXX- 247
C ++R C + ++ I G L V KALVS+S LQ CPP++ A
Sbjct: 167 GCNVQLRSHDLSICTNPGDVVLKIEGNRLSAVMKALVSISSRLQACPPISTASLHAEAVP 226
Query: 248 -XXXXXXXXXXXXHDELFPHLN--------------------------SWLP--SMEGLS 278
+ E+ PH + +LP S +
Sbjct: 227 DALRRPMEYRSQQYREVDPHGSLHRHVEISQEDALVRPFFRTITQPRIDYLPHPSYDHRL 286
Query: 279 INDASRQTTNSNGNFNLDSKGAEHQVVFRILCSNNVAGSVIGKRGAIVRALENKTGASII 338
I AS+ + SK QV +ILCSN A VI R T ASI
Sbjct: 287 ITSASKNPPVTIKQPLQASKDDIRQVDLKILCSNESASVVIKTRSV--------TDASIS 338
Query: 339 FAAPINNFAERIVTVSAIENLGSSYSPAQDAVILVFARIIEDHIGKGFLPASSVESPVTV 398
+ ER+VT++A E S +Q A++LVF+ + E+ K S + S +T
Sbjct: 339 VGDRHPDCDERLVTITAFEKTKDITSESQRALVLVFSNMYENATAKVL--DSGLTSSITA 396
Query: 399 RLLVASSSVNCLNGNEGQVISELKESTRADIQILHGEPVPT-ASDNDVVVQITGGYRCVQ 457
RL+V S+ +NCL G EG++ + +++ T A I +L+ E P S+N+ VVQI+G + V+
Sbjct: 397 RLVVRSNQINCLLGEEGRIKTTIQQRTGAFITVLNVEQNPKCVSENNQVVQISGEFPNVR 456
Query: 458 NALHKITSRIRDNLYPNEVLAEARTNSNFQVNKDIAEGNFSAHGKSAFPLGRFMRQNAG- 516
A++++TS +R++L +N+ G+ A S P AG
Sbjct: 457 EAINQVTSMLREDL----------------INQSFQRGSQYAVNYSEDPFPELFSPTAGY 500
Query: 517 ----GHGGSNSENGVLHTDLSENSER---------------GRGNMLATVTN---TTVEI 554
G + N + H S+ S R G G + +T + T +
Sbjct: 501 TPTFGRSSTMDPNDIFHYS-SQASSRLWESPPPAAPRSVNDGSGGLFSTRDDLVLTRIRC 559
Query: 555 VVSEHVF-----SSVYGEDGGNVDRIRQISGASVTVYDPSAGTSQGKVVISGTPDQTFAA 609
V+ ++ SS + GN+D + ISGTPD+ AA
Sbjct: 560 VLYVWIWKGWSQSSTEESERGNMDM---------------------TICISGTPDEIQAA 598
Query: 610 QSLLQAF 616
+ L A
Sbjct: 599 EHRLHAI 605
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 74/148 (50%), Gaps = 12/148 (8%)
Query: 89 RRETGCKIHCEDAVPGTDDRVILIIGSLWPRKGVALEDGEVEVSNAQEASVRVFERVWEL 148
R T I D P D+R++ I A E + S +Q A V VF ++E
Sbjct: 330 RSVTDASISVGDRHPDCDERLVTI---------TAFEKTKDITSESQRALVLVFSNMYEN 380
Query: 149 EAEKGVNRTINSEVVCKLLAHTSQIGALVGKGGKNISTIRSNT---CTKIRVCPSPPCAA 205
K ++ + S + +L+ ++QI L+G+ G+ +TI+ T T + V +P C +
Sbjct: 381 ATAKVLDSGLTSSITARLVVRSNQINCLLGEEGRIKTTIQQRTGAFITVLNVEQNPKCVS 440
Query: 206 KDEELVLITGESLGVKKALVSVSHCLQD 233
++ ++V I+GE V++A+ V+ L++
Sbjct: 441 ENNQVVQISGEFPNVREAINQVTSMLRE 468
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 87/190 (45%), Gaps = 34/190 (17%)
Query: 304 VVFRILCSNNVAGSVIGKRGAIVRALENKTGASI-IFAAPINNFAERIVTVSA------- 355
V FRILC+ + AG VIGK G +V+ L T +SI + P+++ RI+ +
Sbjct: 30 VTFRILCNVSQAGHVIGKHGGMVKKLHKSTESSIWVEKTPLDDSPYRIIKIFGHVGSVSR 89
Query: 356 ------IENLGS----------SYSPAQDAVILVFARIIEDHIGKGFLPASSVESPVTVR 399
+ N+ + S AQ A+I VF + F +S S V+
Sbjct: 90 VKLGVIVNNVSNREKKEQEQEVEVSRAQYALIRVFEAL-------NFGDCTS--STVSCN 140
Query: 400 LLVASSSVNCLNGNEGQVISELKESTRADIQILHGEPVPTASDNDVVVQITGG-YRCVQN 458
LL+ S V + G G+++ + E T ++Q+ + + DVV++I G V
Sbjct: 141 LLMEGSHVVTVIGKNGELMQRILEETGCNVQLRSHDLSICTNPGDVVLKIEGNRLSAVMK 200
Query: 459 ALHKITSRIR 468
AL I+SR++
Sbjct: 201 ALVSISSRLQ 210
>AT1G14170.3 | Symbols: | RNA-binding KH domain-containing protein
| chr1:4843463-4845253 REVERSE LENGTH=479
Length = 479
Score = 105 bits (263), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 125/444 (28%), Positives = 195/444 (43%), Gaps = 52/444 (11%)
Query: 44 SSKRNYKSKRPVFKILPGQIVFRLVCHAXXXXXXXXXXXXXXXQLRRETGCKIHCEDAVP 103
S +RN + I V+R +C Q+R ET + +A+P
Sbjct: 25 SKRRNLHDETDQNVIASEDTVYRYLCPVKKTGSIIGKGGEIAKQIRSETKSNMRINEALP 84
Query: 104 GTDDRVILIIGSLWPRKGVALEDGEVEVSNAQEASVRVFERVWELEAEKGVNRTI----- 158
G ++RV+ + + +DGE+ V A +A +V + V +
Sbjct: 85 GCEERVVTMYSTNEELNHFG-DDGEL-VCPALDALFKVHDMVVADADQDDGTDDDNDLGE 142
Query: 159 NSEVVCKLLAHTSQIGALVGKGGKNISTIRSNTCTKIRVCPS--PPCAA--KDEELVLIT 214
V ++L + QIG ++GKGG+ I +R++T +IRV P CA +EL+LI
Sbjct: 143 KQTVTVRMLVPSDQIGCVIGKGGQVIQNLRNDTNAQIRVIKDHLPACALTLSHDELLLII 202
Query: 215 GESLGVKKALVSVSHCLQDCPPLAKAXXXXXXXXXXXXXXXXXXXHDELFPHLNSWLPSM 274
GE L V++AL V+ L D P F HL S
Sbjct: 203 GEPLVVREALYQVASLLHDNP--------------------------SRFQHLLLSSSSS 236
Query: 275 E----GLSINDASRQTTNSNGNFNLDSKGA-EHQVVFRILCSNNVAGSVIGKRGAIVRAL 329
G + A+ +++ N D A E V F +C G VIGK G + +
Sbjct: 237 SMHQPGAMLMSAALTSSHRNYAVRRDIADAREFCVCF--ICPAENVGGVIGKGGGFINQI 294
Query: 330 ENKTGASIIFAAPINNFAERIVTVSAIENLGSSYSPAQDAVILVFARIIEDHIGKGFLPA 389
+TGA+I + + I+ +S+ E SPA +A I + R E +GK
Sbjct: 295 RQETGATIRVNTSETDDDDCIIFISSKE-FYEDQSPAVNAAIRLQQRCSE-KVGK----- 347
Query: 390 SSVESPVTVRLLVASSSVNCLNGNEGQVISELKESTRADIQILHGEPVPT-ASDNDVVVQ 448
+ + ++ RLLV+SS + CL G G VISE++ TRA+I+IL E VP A +++ +VQ
Sbjct: 348 DANDLAISTRLLVSSSQIGCLIGKGGAVISEMRSVTRANIRILQKEDVPKIAREDEEMVQ 407
Query: 449 ITGGYRCVQNALHKITSRIRDNLY 472
ITG AL ++ R+R N +
Sbjct: 408 ITGSPDAAMKALTQVILRLRANSF 431
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 84/188 (44%), Gaps = 19/188 (10%)
Query: 43 SSSKRNYKSKRPVFKILPGQIVFRLVCHAXXXXXXXXXXXXXXXQLRRETGCKIHCEDAV 102
+SS RNY +R + + F +C A Q+R+ETG I +
Sbjct: 251 TSSHRNYAVRRDIADAREFCVCF--ICPAENVGGVIGKGGGFINQIRQETGATIRVNTSE 308
Query: 103 PGTDDRVILIIGSLWPRKGVALEDGEVEVSNAQEASVRVFERVWELEAEKGVNRTINSEV 162
DD +I I + ED S A A++R+ +R E + + I++
Sbjct: 309 TDDDDCIIFISSKEF------YEDQ----SPAVNAAIRLQQRCSEKVGKDANDLAIST-- 356
Query: 163 VCKLLAHTSQIGALVGKGGKNISTIRSNTCTKIRVCPS---PPCAAKDEELVLITGESLG 219
+LL +SQIG L+GKGG IS +RS T IR+ P A +DEE+V ITG
Sbjct: 357 --RLLVSSSQIGCLIGKGGAVISEMRSVTRANIRILQKEDVPKIAREDEEMVQITGSPDA 414
Query: 220 VKKALVSV 227
KAL V
Sbjct: 415 AMKALTQV 422
Score = 66.2 bits (160), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 63/227 (27%), Positives = 99/227 (43%), Gaps = 31/227 (13%)
Query: 300 AEHQVVFRILCSNNVAGSVIGKRGAIVRALENKTGASIIFAAPINNFAERIVTV-SAIEN 358
A V+R LC GS+IGK G I + + ++T +++ + ER+VT+ S E
Sbjct: 40 ASEDTVYRYLCPVKKTGSIIGKGGEIAKQIRSETKSNMRINEALPGCEERVVTMYSTNEE 99
Query: 359 L------GSSYSPAQDAVILVFARIIEDHIGKGFLPASSV---ESPVTVRLLVASSSVNC 409
L G PA DA+ V ++ D + + VTVR+LV S + C
Sbjct: 100 LNHFGDDGELVCPALDALFKVHDMVVADADQDDGTDDDNDLGEKQTVTVRMLVPSDQIGC 159
Query: 410 LNGNEGQVISELKESTRADIQIL--HGEPVPTASDNDVVVQITGGYRCVQNALHKITSRI 467
+ G GQVI L+ T A I+++ H +D ++ I G V+ AL+++ S +
Sbjct: 160 VIGKGGQVIQNLRNDTNAQIRVIKDHLPACALTLSHDELLLIIGEPLVVREALYQVASLL 219
Query: 468 RDN----------------LYPNEVLAEARTNS---NFQVNKDIAEG 495
DN P +L A S N+ V +DIA+
Sbjct: 220 HDNPSRFQHLLLSSSSSSMHQPGAMLMSAALTSSHRNYAVRRDIADA 266
>AT1G14170.1 | Symbols: | RNA-binding KH domain-containing protein
| chr1:4843463-4845253 REVERSE LENGTH=454
Length = 454
Score = 103 bits (258), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 121/424 (28%), Positives = 189/424 (44%), Gaps = 52/424 (12%)
Query: 64 VFRLVCHAXXXXXXXXXXXXXXXQLRRETGCKIHCEDAVPGTDDRVILIIGSLWPRKGVA 123
V+R +C Q+R ET + +A+PG ++RV+ + +
Sbjct: 20 VYRYLCPVKKTGSIIGKGGEIAKQIRSETKSNMRINEALPGCEERVVTMYSTNEELNHFG 79
Query: 124 LEDGEVEVSNAQEASVRVFERVWELEAEKGVNRTI-----NSEVVCKLLAHTSQIGALVG 178
+DGE+ V A +A +V + V + V ++L + QIG ++G
Sbjct: 80 -DDGEL-VCPALDALFKVHDMVVADADQDDGTDDDNDLGEKQTVTVRMLVPSDQIGCVIG 137
Query: 179 KGGKNISTIRSNTCTKIRVCPS--PPCAA--KDEELVLITGESLGVKKALVSVSHCLQDC 234
KGG+ I +R++T +IRV P CA +EL+LI GE L V++AL V+ L D
Sbjct: 138 KGGQVIQNLRNDTNAQIRVIKDHLPACALTLSHDELLLIIGEPLVVREALYQVASLLHDN 197
Query: 235 PPLAKAXXXXXXXXXXXXXXXXXXXHDELFPHLNSWLPSME----GLSINDASRQTTNSN 290
P F HL S G + A+ +++ N
Sbjct: 198 P--------------------------SRFQHLLLSSSSSSMHQPGAMLMSAALTSSHRN 231
Query: 291 GNFNLDSKGA-EHQVVFRILCSNNVAGSVIGKRGAIVRALENKTGASIIFAAPINNFAER 349
D A E V F +C G VIGK G + + +TGA+I + +
Sbjct: 232 YAVRRDIADAREFCVCF--ICPAENVGGVIGKGGGFINQIRQETGATIRVNTSETDDDDC 289
Query: 350 IVTVSAIENLGSSYSPAQDAVILVFARIIEDHIGKGFLPASSVESPVTVRLLVASSSVNC 409
I+ +S+ E SPA +A I + R E +GK + + ++ RLLV+SS + C
Sbjct: 290 IIFISSKE-FYEDQSPAVNAAIRLQQRCSE-KVGK-----DANDLAISTRLLVSSSQIGC 342
Query: 410 LNGNEGQVISELKESTRADIQILHGEPVPT-ASDNDVVVQITGGYRCVQNALHKITSRIR 468
L G G VISE++ TRA+I+IL E VP A +++ +VQITG AL ++ R+R
Sbjct: 343 LIGKGGAVISEMRSVTRANIRILQKEDVPKIAREDEEMVQITGSPDAAMKALTQVILRLR 402
Query: 469 DNLY 472
N +
Sbjct: 403 ANSF 406
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 84/188 (44%), Gaps = 19/188 (10%)
Query: 43 SSSKRNYKSKRPVFKILPGQIVFRLVCHAXXXXXXXXXXXXXXXQLRRETGCKIHCEDAV 102
+SS RNY +R + + F +C A Q+R+ETG I +
Sbjct: 226 TSSHRNYAVRRDIADAREFCVCF--ICPAENVGGVIGKGGGFINQIRQETGATIRVNTSE 283
Query: 103 PGTDDRVILIIGSLWPRKGVALEDGEVEVSNAQEASVRVFERVWELEAEKGVNRTINSEV 162
DD +I I + ED S A A++R+ +R E + + I++
Sbjct: 284 TDDDDCIIFISSKEF------YEDQ----SPAVNAAIRLQQRCSEKVGKDANDLAIST-- 331
Query: 163 VCKLLAHTSQIGALVGKGGKNISTIRSNTCTKIRVCPS---PPCAAKDEELVLITGESLG 219
+LL +SQIG L+GKGG IS +RS T IR+ P A +DEE+V ITG
Sbjct: 332 --RLLVSSSQIGCLIGKGGAVISEMRSVTRANIRILQKEDVPKIAREDEEMVQITGSPDA 389
Query: 220 VKKALVSV 227
KAL V
Sbjct: 390 AMKALTQV 397
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 63/227 (27%), Positives = 99/227 (43%), Gaps = 31/227 (13%)
Query: 300 AEHQVVFRILCSNNVAGSVIGKRGAIVRALENKTGASIIFAAPINNFAERIVTV-SAIEN 358
A V+R LC GS+IGK G I + + ++T +++ + ER+VT+ S E
Sbjct: 15 ASEDTVYRYLCPVKKTGSIIGKGGEIAKQIRSETKSNMRINEALPGCEERVVTMYSTNEE 74
Query: 359 L------GSSYSPAQDAVILVFARIIEDHIGKGFLPASSV---ESPVTVRLLVASSSVNC 409
L G PA DA+ V ++ D + + VTVR+LV S + C
Sbjct: 75 LNHFGDDGELVCPALDALFKVHDMVVADADQDDGTDDDNDLGEKQTVTVRMLVPSDQIGC 134
Query: 410 LNGNEGQVISELKESTRADIQIL--HGEPVPTASDNDVVVQITGGYRCVQNALHKITSRI 467
+ G GQVI L+ T A I+++ H +D ++ I G V+ AL+++ S +
Sbjct: 135 VIGKGGQVIQNLRNDTNAQIRVIKDHLPACALTLSHDELLLIIGEPLVVREALYQVASLL 194
Query: 468 RDN----------------LYPNEVLAEARTNS---NFQVNKDIAEG 495
DN P +L A S N+ V +DIA+
Sbjct: 195 HDNPSRFQHLLLSSSSSSMHQPGAMLMSAALTSSHRNYAVRRDIADA 241
>AT1G14170.2 | Symbols: | RNA-binding KH domain-containing protein
| chr1:4843463-4845253 REVERSE LENGTH=446
Length = 446
Score = 103 bits (258), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 121/424 (28%), Positives = 189/424 (44%), Gaps = 52/424 (12%)
Query: 64 VFRLVCHAXXXXXXXXXXXXXXXQLRRETGCKIHCEDAVPGTDDRVILIIGSLWPRKGVA 123
V+R +C Q+R ET + +A+PG ++RV+ + +
Sbjct: 12 VYRYLCPVKKTGSIIGKGGEIAKQIRSETKSNMRINEALPGCEERVVTMYSTNEELNHFG 71
Query: 124 LEDGEVEVSNAQEASVRVFERVWELEAEKGVNRTI-----NSEVVCKLLAHTSQIGALVG 178
+DGE+ V A +A +V + V + V ++L + QIG ++G
Sbjct: 72 -DDGEL-VCPALDALFKVHDMVVADADQDDGTDDDNDLGEKQTVTVRMLVPSDQIGCVIG 129
Query: 179 KGGKNISTIRSNTCTKIRVCPS--PPCAA--KDEELVLITGESLGVKKALVSVSHCLQDC 234
KGG+ I +R++T +IRV P CA +EL+LI GE L V++AL V+ L D
Sbjct: 130 KGGQVIQNLRNDTNAQIRVIKDHLPACALTLSHDELLLIIGEPLVVREALYQVASLLHDN 189
Query: 235 PPLAKAXXXXXXXXXXXXXXXXXXXHDELFPHLNSWLPSME----GLSINDASRQTTNSN 290
P F HL S G + A+ +++ N
Sbjct: 190 P--------------------------SRFQHLLLSSSSSSMHQPGAMLMSAALTSSHRN 223
Query: 291 GNFNLDSKGA-EHQVVFRILCSNNVAGSVIGKRGAIVRALENKTGASIIFAAPINNFAER 349
D A E V F +C G VIGK G + + +TGA+I + +
Sbjct: 224 YAVRRDIADAREFCVCF--ICPAENVGGVIGKGGGFINQIRQETGATIRVNTSETDDDDC 281
Query: 350 IVTVSAIENLGSSYSPAQDAVILVFARIIEDHIGKGFLPASSVESPVTVRLLVASSSVNC 409
I+ +S+ E SPA +A I + R E +GK + + ++ RLLV+SS + C
Sbjct: 282 IIFISSKE-FYEDQSPAVNAAIRLQQRCSE-KVGK-----DANDLAISTRLLVSSSQIGC 334
Query: 410 LNGNEGQVISELKESTRADIQILHGEPVPT-ASDNDVVVQITGGYRCVQNALHKITSRIR 468
L G G VISE++ TRA+I+IL E VP A +++ +VQITG AL ++ R+R
Sbjct: 335 LIGKGGAVISEMRSVTRANIRILQKEDVPKIAREDEEMVQITGSPDAAMKALTQVILRLR 394
Query: 469 DNLY 472
N +
Sbjct: 395 ANSF 398
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 99/225 (44%), Gaps = 31/225 (13%)
Query: 302 HQVVFRILCSNNVAGSVIGKRGAIVRALENKTGASIIFAAPINNFAERIVTV-SAIENL- 359
H V+R LC GS+IGK G I + + ++T +++ + ER+VT+ S E L
Sbjct: 9 HDTVYRYLCPVKKTGSIIGKGGEIAKQIRSETKSNMRINEALPGCEERVVTMYSTNEELN 68
Query: 360 -----GSSYSPAQDAVILVFARIIEDHIGKGFLPASSV---ESPVTVRLLVASSSVNCLN 411
G PA DA+ V ++ D + + VTVR+LV S + C+
Sbjct: 69 HFGDDGELVCPALDALFKVHDMVVADADQDDGTDDDNDLGEKQTVTVRMLVPSDQIGCVI 128
Query: 412 GNEGQVISELKESTRADIQIL--HGEPVPTASDNDVVVQITGGYRCVQNALHKITSRIRD 469
G GQVI L+ T A I+++ H +D ++ I G V+ AL+++ S + D
Sbjct: 129 GKGGQVIQNLRNDTNAQIRVIKDHLPACALTLSHDELLLIIGEPLVVREALYQVASLLHD 188
Query: 470 N----------------LYPNEVLAEARTNS---NFQVNKDIAEG 495
N P +L A S N+ V +DIA+
Sbjct: 189 NPSRFQHLLLSSSSSSMHQPGAMLMSAALTSSHRNYAVRRDIADA 233
Score = 66.2 bits (160), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 84/188 (44%), Gaps = 19/188 (10%)
Query: 43 SSSKRNYKSKRPVFKILPGQIVFRLVCHAXXXXXXXXXXXXXXXQLRRETGCKIHCEDAV 102
+SS RNY +R + + F +C A Q+R+ETG I +
Sbjct: 218 TSSHRNYAVRRDIADAREFCVCF--ICPAENVGGVIGKGGGFINQIRQETGATIRVNTSE 275
Query: 103 PGTDDRVILIIGSLWPRKGVALEDGEVEVSNAQEASVRVFERVWELEAEKGVNRTINSEV 162
DD +I I + ED S A A++R+ +R E + + I++
Sbjct: 276 TDDDDCIIFISSKEF------YEDQ----SPAVNAAIRLQQRCSEKVGKDANDLAIST-- 323
Query: 163 VCKLLAHTSQIGALVGKGGKNISTIRSNTCTKIRVCPS---PPCAAKDEELVLITGESLG 219
+LL +SQIG L+GKGG IS +RS T IR+ P A +DEE+V ITG
Sbjct: 324 --RLLVSSSQIGCLIGKGGAVISEMRSVTRANIRILQKEDVPKIAREDEEMVQITGSPDA 381
Query: 220 VKKALVSV 227
KAL V
Sbjct: 382 AMKALTQV 389
>AT4G18375.1 | Symbols: | RNA-binding KH domain-containing protein
| chr4:10152825-10154836 FORWARD LENGTH=532
Length = 532
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 124/477 (25%), Positives = 206/477 (43%), Gaps = 76/477 (15%)
Query: 43 SSSKRNYKSKRPVFKILPGQ-IVFRLVCHAXXXXXXXXXXXXXXXQLRRETGCKIHCEDA 101
S S RN K + KI + +V+R++C +R T KI D
Sbjct: 15 SESNRNQKRRISHDKINRDELVVYRILCPIDVVGGVIGKSGKVINAIRHNTKAKIKVFDQ 74
Query: 102 VPGTDDRVILIIGSLWPRKG-VALEDGEVE-VSNAQEASVRVFERVWELEAEKG----VN 155
+ G RVI I S+ ++ + E E + AQ+A ++V++ + + E V+
Sbjct: 75 LHGCSQRVITIYCSVKEKQEEIGFTKSENEPLCCAQDALLKVYDAIVASDEENNTKTNVD 134
Query: 156 RTINSEVVCKLLAHTSQIGALVGKGGKNISTIRSNTCTKIRVC------PSPPCAAKDEE 209
R N E C+LL SQ +L+GK G+NI IR T ++V PS CA + +
Sbjct: 135 RDDNKE--CRLLVPFSQSSSLIGKAGENIKRIRRRTRASVKVVSKDVSDPSHVCAMEYDN 192
Query: 210 LVLITGESLGVKKALVSVSHCL---------------QDCPPLAKAXXXXXXXXXXXXXX 254
+V+I+GE VK+AL +VS + QD P A
Sbjct: 193 VVVISGEPESVKQALFAVSAIMYKINPRENIPLDSTSQDVPA-ASVIVPSDLSNSVYPQT 251
Query: 255 XXXXXHDELFPHLNSWLPS-MEGLSIND-ASRQTTNSN------------GNFNLDSKGA 300
D + + +PS LS++D T +N F S+
Sbjct: 252 GFYSNQDHILQQ-GAGVPSYFNALSVSDFQGYAETAANPVPVFASSLPVTHGFGGSSRSE 310
Query: 301 EHQVVFRILCSNNVAGSVIGKRGAIVRALENKTGASIIFAAPINNFA------ERIVTVS 354
E +VF++LC VIGK G+ ++ + +G+ I +N+ E ++ V+
Sbjct: 311 E--LVFKVLCPLCNIMRVIGKGGSTIKRIREASGSCI----EVNDSRTKCGDDECVIIVT 364
Query: 355 AIENLGSSYSPAQDAVILVFARIIEDHIGKGFLPASSVESPVTVRLLVASSSVNCLNGNE 414
A E+ S A +AV+L I D + V ++LLV+S + C+ G
Sbjct: 365 ATESPDDMKSMAVEAVLL-LQEYINDEDAEN----------VKMQLLVSSKVIGCVIGKS 413
Query: 415 GQVISELKESTRADIQILHGEPVPTASDNDVVVQITGGYRCVQNALHKITSRIRDNL 471
G VI+E+++ T A+I I G+ D +V+++G V++AL +I R+R+++
Sbjct: 414 GSVINEIRKRTNANICISKGK-------KDDLVEVSGEVSSVRDALIQIVLRLREDV 463
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 94/381 (24%), Positives = 161/381 (42%), Gaps = 52/381 (13%)
Query: 285 QTTNSNGNFNL------DSKGAEHQVVFRILCSNNVAGSVIGKRGAIVRALENKTGASII 338
Q NS N N D + VV+RILC +V G VIGK G ++ A+ + T A I
Sbjct: 11 QRNNSESNRNQKRRISHDKINRDELVVYRILCPIDVVGGVIGKSGKVINAIRHNTKAKIK 70
Query: 339 FAAPINNFAERIVTV-----SAIENLGSSYSP------AQDAVILVFARIIEDHIGKGFL 387
++ ++R++T+ E +G + S AQDA++ V+ I+
Sbjct: 71 VFDQLHGCSQRVITIYCSVKEKQEEIGFTKSENEPLCCAQDALLKVYDAIVASDEENNTK 130
Query: 388 PASSVESPVTVRLLVASSSVNCLNGNEGQVISELKESTRADIQILHGE-PVPT---ASDN 443
+ RLLV S + L G G+ I ++ TRA ++++ + P+ A +
Sbjct: 131 TNVDRDDNKECRLLVPFSQSSSLIGKAGENIKRIRRRTRASVKVVSKDVSDPSHVCAMEY 190
Query: 444 DVVVQITGGYRCVQNALHKITSRIRDNLYPNEVLAEARTNSNFQVNKDIAEGNFSAHGKS 503
D VV I+G V+ AL +++ I + P E + T+ + I + S S
Sbjct: 191 DNVVVISGEPESVKQALFAVSA-IMYKINPRENIPLDSTSQDVPAASVIVPSDLS---NS 246
Query: 504 AFP-LGRFMRQN---AGGHGGSNSENGVLHTDLSENSERGRGNMLATVTNTTV------E 553
+P G + Q+ G G + N + +D +E + ++ V
Sbjct: 247 VYPQTGFYSNQDHILQQGAGVPSYFNALSVSDFQGYAETAANPVPVFASSLPVTHGFGGS 306
Query: 554 IVVSEHVFS---------SVYGEDGGNVDRIRQISGASVTVYDP--SAGTSQGKVVISGT 602
E VF V G+ G + RIR+ SG+ + V D G + ++++ T
Sbjct: 307 SRSEELVFKVLCPLCNIMRVIGKGGSTIKRIREASGSCIEVNDSRTKCGDDECVIIVTAT 366
Query: 603 --PD--QTFAAQS--LLQAFI 617
PD ++ A ++ LLQ +I
Sbjct: 367 ESPDDMKSMAVEAVLLLQEYI 387
>AT4G26000.1 | Symbols: PEP | RNA-binding KH domain-containing
protein | chr4:13197280-13199539 FORWARD LENGTH=495
Length = 495
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 104/367 (28%), Positives = 173/367 (47%), Gaps = 40/367 (10%)
Query: 282 ASRQTTNSNGNFNLDSK--GAEHQVVFRILCSNNVAGSVIGKRGAIVRALENKTGASI-I 338
A+ +TT + N + + + G VFR++ G++IG++G ++ + +T A I +
Sbjct: 50 AAAETTFPDTNDSAEERWPGWPGDCVFRMIVPVTKVGAIIGRKGDFIKKMCEETRARIKV 109
Query: 339 FAAPINNFAERIVTVSAIENLGSSYSPAQDAVILVFARI--IEDHIGKGFLPASSVESPV 396
P+N +RIV +S E + SPA DAV+ VF R+ + D+ A SV S
Sbjct: 110 LDGPVNT-PDRIVLISGKEEPEAYMSPAMDAVLRVFRRVSGLPDNDDDDVQNAGSVFS-- 166
Query: 397 TVRLLVASSSVNCLNGNEGQVISELKESTRADIQILHGEPVP-TASDNDVVVQITGGYRC 455
+VRLLVAS+ L G +G +I + E++ A ++IL E P A+ ++ +V + G
Sbjct: 167 SVRLLVASTQAINLIGKQGSLIKSIVENSGASVRILSEEETPFYAAQDERIVDLQGEALK 226
Query: 456 VQNALHKITSRIRDNLYPN--------------------EVLAEARTNSNFQVNKDIAEG 495
+ AL I +R L + E LAE+++ S ++ ++ E
Sbjct: 227 ILKALEAIVGHLRRFLVDHTVVPLFEKQYLARVSQTRQEEPLAESKS-SLHTISSNLMEP 285
Query: 496 NFS--AHGKSAFPLGRFMRQNAGGHGGS---NSENGVLHTDLSENSERGRGNMLATVTNT 550
+FS A + F L R R ++ S++ VL S R + V+
Sbjct: 286 DFSLLARREPLF-LERDSRVDSRVQPSGVSIYSQDPVLSARHSPGLARVSSAFVTQVSQ- 343
Query: 551 TVEIVVSEHVFSSVYGEDGGNVDRIRQISGASVTVYDPSAGTSQGKVVISGTPDQTFAAQ 610
T++I S + G +G N+ IR+ SGA++T+ + S Q V I GT Q A+
Sbjct: 344 TMQIPFS--YAEDIIGVEGANIAYIRRRSGATITIKE-SPHPDQITVEIKGTTSQVQTAE 400
Query: 611 SLLQAFI 617
L+Q FI
Sbjct: 401 QLIQEFI 407
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 79/173 (45%), Gaps = 14/173 (8%)
Query: 60 PGQIVFRLVCHAXXXXXXXXXXXXXXXQLRRETGCKIHCEDAVPGTDDRVILIIGSLWPR 119
PG VFR++ ++ ET +I D T DR++LI G
Sbjct: 71 PGDCVFRMIVPVTKVGAIIGRKGDFIKKMCEETRARIKVLDGPVNTPDRIVLISGK---- 126
Query: 120 KGVALEDGEVEVSNAQEASVRVFERVWEL--EAEKGVNRTINSEVVCKLLAHTSQIGALV 177
E+ E +S A +A +RVF RV L + V + +LL ++Q L+
Sbjct: 127 -----EEPEAYMSPAMDAVLRVFRRVSGLPDNDDDDVQNAGSVFSSVRLLVASTQAINLI 181
Query: 178 GKGGKNISTIRSNTCTKIRVCP---SPPCAAKDEELVLITGESLGVKKALVSV 227
GK G I +I N+ +R+ +P AA+DE +V + GE+L + KAL ++
Sbjct: 182 GKQGSLIKSIVENSGASVRILSEEETPFYAAQDERIVDLQGEALKILKALEAI 234
>AT3G04610.1 | Symbols: FLK | RNA-binding KH domain-containing
protein | chr3:1250762-1254272 REVERSE LENGTH=577
Length = 577
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 90/351 (25%), Positives = 145/351 (41%), Gaps = 47/351 (13%)
Query: 303 QVVFRILCSNNVAGSVIGKRGAIVRALENKTGASI-IFAAPINNFAERIVTVSAIENLGS 361
+ VFR+L GS+IG++G +++ + +T A I I P ER V VS E S
Sbjct: 186 ETVFRMLVPAQKVGSIIGRKGDVIKKIVEETRARIKILDGPPGT-TERAVMVSGKEEPES 244
Query: 362 SYSPAQDAVILVFARIIEDHIGKGFLPASSVESP--VTVRLLVASSSVNCLNGNEGQVIS 419
S P+ D ++ V RI++ G+ AS P V+ RLLV +S L G +G +
Sbjct: 245 SLPPSMDGLLRVHMRIVDGLDGE----ASQAPPPSKVSTRLLVPASQAGSLIGKQGGTVK 300
Query: 420 ELKESTRADIQILHGEPVPT-ASDNDVVVQITGGYRCVQNALHKITSRIRDNLYPNEVLA 478
++E++ +++L E +P A +D VV++ G V AL I S +R L ++
Sbjct: 301 AIQEASACIVRVLGSEDLPVFALQDDRVVEVVGEPTSVHRALELIASHLRKFLVDRSIIP 360
Query: 479 EARTNSNFQVNKDIAEGNF--SAHGKSAFPLGRFMRQNAGGHGGSNSENGVL-------- 528
Q+ K + + H P G GG+G +
Sbjct: 361 FFEN----QMQKPTRQMDHMPPPHQSWGPPQGHAPSVGGGGYGHNPPPYMQPPPRHDSYY 416
Query: 529 --------------HTDLSENSERGRGN--------MLATVTNTTVEIVVSEHVFSSVYG 566
H +S N M+A ++I +S +V G
Sbjct: 417 PPPEMRQPPMEKQPHQGISAYGREPPMNVHVSSAPPMVAQQVTQQMQIPLS--YADAVIG 474
Query: 567 EDGGNVDRIRQISGASVTVYDPSAGTSQGKVVISGTPDQTFAAQSLLQAFI 617
G N+ R++SGA+VT+ + + V +SGT Q A L+Q F+
Sbjct: 475 TSGSNISYTRRLSGATVTIQETRGVPGEMTVEVSGTGSQVQTAVQLIQNFM 525
Score = 59.3 bits (142), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 78/175 (44%), Gaps = 12/175 (6%)
Query: 60 PGQIVFRLVCHAXXXXXXXXXXXXXXXQLRRETGCKIHCEDAVPGTDDRVILIIGSLWPR 119
PG+ VFR++ A ++ ET +I D PGT +R +++ G
Sbjct: 184 PGETVFRMLVPAQKVGSIIGRKGDVIKKIVEETRARIKILDGPPGTTERAVMVSGK---- 239
Query: 120 KGVALEDGEVEVSNAQEASVRVFERVWELEAEKGVNRTINSEVVCKLLAHTSQIGALVGK 179
E+ E + + + +RV R+ + + S+V +LL SQ G+L+GK
Sbjct: 240 -----EEPESSLPPSMDGLLRVHMRIVDGLDGEASQAPPPSKVSTRLLVPASQAGSLIGK 294
Query: 180 GGKNISTIRSNTCTKIRVCPS---PPCAAKDEELVLITGESLGVKKALVSVSHCL 231
G + I+ + +RV S P A +D+ +V + GE V +AL ++ L
Sbjct: 295 QGGTVKAIQEASACIVRVLGSEDLPVFALQDDRVVEVVGEPTSVHRALELIASHL 349
>AT2G03110.1 | Symbols: | RNA binding;nucleic acid binding |
chr2:935432-935975 FORWARD LENGTH=153
Length = 153
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 73/147 (49%), Gaps = 12/147 (8%)
Query: 100 DAVPGTDDRVILIIGSLWPRKGVALEDGEVEVSNAQEASVRVFERVWELEAEKGVNRTI- 158
+A+PG D+RV+ I + R + +D E V A +A +V + V E + +
Sbjct: 5 EALPGCDERVVTIYSNSEERNRIE-DDNEDFVCPAFDALFKVHDMVVVEEFDDDDDYNDN 63
Query: 159 ------NSEVVCKLLAHTSQIGALVGKGGKNISTIRSNTCTKIRV----CPSPPCAAKDE 208
+ V ++L + QIG L+GKGG I T+R++T +IRV P A +
Sbjct: 64 DEYSEGQTVVTVRMLVPSDQIGYLIGKGGPIIQTLRNDTNAQIRVRNDNLPMCALALSHD 123
Query: 209 ELVLITGESLGVKKALVSVSHCLQDCP 235
EL+ I G+ V++AL V+ L + P
Sbjct: 124 ELLQIIGDPSAVREALYQVAFLLYNNP 150
>AT5G53060.2 | Symbols: | RNA-binding KH domain-containing protein
| chr5:21515355-21520310 FORWARD LENGTH=198
Length = 198
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 42/121 (34%), Positives = 58/121 (47%), Gaps = 16/121 (13%)
Query: 306 FRILCSNNVAGSVIGKRGAIVRALENKTGASIIFAAPINNFAERIVTVS-----AIENLG 360
+RILC + AG VIGK G I++++ TGA I + AERI+ +S +
Sbjct: 70 YRILCHDAKAGGVIGKSGTIIKSIRQHTGAWINVHELVPGDAERIIEISDNRRRDPDGRM 129
Query: 361 SSYSPAQDAVILVFARIIED--HIGKGFLPASSVES---------PVTVRLLVASSSVNC 409
S+SPAQ+A+ V RI+E G G P E V RL+V+ V C
Sbjct: 130 PSFSPAQEALFSVHDRILESEAQFGYGGPPPEEEEDYGGVRPGGGRVVTRLVVSRMHVGC 189
Query: 410 L 410
L
Sbjct: 190 L 190