Miyakogusa Predicted Gene

Lj2g3v1455180.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1455180.1 tr|A9U6F5|A9U6F5_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_103200,46.79,1e-17,seg,NULL;
coiled-coil,NULL,CUFF.37127.1
         (587 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G65540.1 | Symbols:  | unknown protein; Has 6825 Blast hits t...   385   e-107

>AT5G65540.1 | Symbols:  | unknown protein; Has 6825 Blast hits to
           3811 proteins in 289 species: Archae - 0; Bacteria -
           184; Metazoa - 2139; Fungi - 760; Plants - 816; Viruses
           - 52; Other Eukaryotes - 2874 (source: NCBI BLink). |
           chr5:26195710-26198112 FORWARD LENGTH=605
          Length = 605

 Score =  385 bits (989), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 241/651 (37%), Positives = 336/651 (51%), Gaps = 110/651 (16%)

Query: 1   MALLGDDGRGYELARKLESCGVWRTWLGDSTYSNFAPFLSSPSAWDSFISTDPSNSRAHI 60
           MALLGDDGRG++LARKLE  GVWRTWLGDS YS+F  +LSSPS W++F+  D S SRA I
Sbjct: 1   MALLGDDGRGFDLARKLEVSGVWRTWLGDSIYSSFHHYLSSPSTWEAFMRVDESKSRAQI 60

Query: 61  HLQLRVRALLFDKXXXXXXXXXXXXXXXL----------------LNPSFLRLHPDDLYF 104
            LQLRVRALLFDK                                LNP++L+LH DD+Y+
Sbjct: 61  QLQLRVRALLFDKATVSLFLRSNTIAASSSSSASISDVSSVAVSKLNPNYLQLHGDDVYY 120

Query: 105 TLDQPPPK------------------------------------NQSKAYRNDDLPETWY 128
           TL+    +                                    N S+  R ++LP+TWY
Sbjct: 121 TLENASLESGFQREGGIRHNPSLTKSLSKPSFTSGTRGSESDFSNLSQRSRFEELPDTWY 180

Query: 129 TQVMESYKANKKLLAGDRESPKRSPVEMASYVKYTANQKKRRLAFREGNHAADHA-STMQ 187
           TQ +  Y     +  G +ES KR+P  M++Y++     K++R  F E    A  + S+  
Sbjct: 181 TQFISRYGFKYGMSVGGQESDKRTPEGMSTYLRVVDTHKRKRAPFLEDRSLAHMSRSSTH 240

Query: 188 PXXXXXXXXXXXXXXXXESVFPEVTFMWNCVPESALPMSNRVEINPQKMKLYSSILDTLP 247
           P                    PE  F  NCVPE+AL    R + N  K + Y  +LDTLP
Sbjct: 241 PSSGFDGSTSEDDIL----FLPETMFRMNCVPETALSPITRTQDN-LKTEFYG-VLDTLP 294

Query: 248 PLMTRNPAMIERLGIRPEIISAEHGGPLKFRPQWTGRVLSPEQGTKLSQKVVARILLGVG 307
            + TR+  MIERLG+ PE    E  G L+ R +      S +Q   +S+KVVAR+LL +G
Sbjct: 295 QVTTRSHIMIERLGLMPEYHRMEERGVLRSR-KAEKMGFSDDQAALVSRKVVARMLLTMG 353

Query: 308 FEASMEGPVEYFAEVMSKRIVKIGTNLKVLTDSYKKQCSAIELLKMLLKTVGFSNFAPLV 367
           FE + E P++ F++++S+ + K+G  LK+LTDSYKK+CSA++L+KM L T G+SN   L 
Sbjct: 354 FEGATEVPIDVFSQLVSRHMSKLGRILKLLTDSYKKECSAMQLIKMFLNTTGYSNLGSLA 413

Query: 368 DVVKDGSKNIXXXXXXXXXXXXXXXXXXXXXXXRLPREVQMR---QMQQFLHSRNLAMHX 424
           ++VKDG++N                        RLP+++Q +   QMQQ ++ +N     
Sbjct: 414 EIVKDGTRNHPPPNQKQPQVLQQQLHLQQQASLRLPQQIQRQMHPQMQQMVNPQNFQQ-- 471

Query: 425 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXERLRTHPTSTPRAAMDIDKE 484
                                                   ER+R  P ++PR  MD++K+
Sbjct: 472 ------------------------------------QQQLERMRRRPVTSPRPNMDMEKD 495

Query: 485 RPLVQVKIENQTDLPVDGNSFNTRHPXXXXXXXXX-------XXXSSFHPQ-SSNQFRQM 536
           RPLVQVK+EN +++ VDGN+FN  +P                   S+   Q   NQFRQ+
Sbjct: 496 RPLVQVKLENPSEMAVDGNAFNPMNPRHQQQLQQQLRQQQQIAAMSNMQQQPGYNQFRQL 555

Query: 537 ANLQIPAMQSPNIGMVRAQPVKVEGFQELMGSPSSTKLDSEENRLTSPSSK 587
           A++QIP MQ+P +G VRAQPVKVEGF++LMG  SS K DS++ +L SP +K
Sbjct: 556 ASMQIPQMQTPTLGTVRAQPVKVEGFEQLMGGDSSLKHDSDD-KLRSPPTK 605