Miyakogusa Predicted Gene
- Lj2g3v1438380.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v1438380.2 Non Chatacterized Hit- tr|G7JXS7|G7JXS7_MEDTR
Putative uncharacterized protein OS=Medicago truncatul,68.49,5e-18,
,CUFF.37075.2
(90 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G67910.2 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 74 2e-14
AT1G67910.1 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 74 2e-14
AT1G24577.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 70 2e-13
AT5G55980.1 | Symbols: | serine-rich protein-related | chr5:226... 52 6e-08
AT5G20370.1 | Symbols: | serine-rich protein-related | chr5:688... 48 1e-06
>AT1G67910.2 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast;
EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12
growth stages; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G24577.1). |
chr1:25471534-25471809 REVERSE LENGTH=91
Length = 91
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/76 (53%), Positives = 51/76 (67%), Gaps = 6/76 (7%)
Query: 6 MKVEISSGNYVNTTGLMEIHSAQGELMRQPSMTKTNCLCSPTTHAGSFRCRLHRTPSFQR 65
MKVEI S + N+ + L RQ SMTKTNCLCSPTTH GSFRCR+HR+ S QR
Sbjct: 14 MKVEIHS--HFNSA----VEVGSRGLSRQTSMTKTNCLCSPTTHPGSFRCRIHRSLSLQR 67
Query: 66 TKSMESSTRQDAVGIP 81
TKS+E+++ D+ P
Sbjct: 68 TKSIEAASLLDSPPKP 83
>AT1G67910.1 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast;
EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12
growth stages; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT1G24577.1); Has 167 Blast
hits to 167 proteins in 19 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 167;
Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
| chr1:25471534-25471809 REVERSE LENGTH=91
Length = 91
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/76 (53%), Positives = 51/76 (67%), Gaps = 6/76 (7%)
Query: 6 MKVEISSGNYVNTTGLMEIHSAQGELMRQPSMTKTNCLCSPTTHAGSFRCRLHRTPSFQR 65
MKVEI S + N+ + L RQ SMTKTNCLCSPTTH GSFRCR+HR+ S QR
Sbjct: 14 MKVEIHS--HFNSA----VEVGSRGLSRQTSMTKTNCLCSPTTHPGSFRCRIHRSLSLQR 67
Query: 66 TKSMESSTRQDAVGIP 81
TKS+E+++ D+ P
Sbjct: 68 TKSIEAASLLDSPPKP 83
>AT1G24577.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT1G67910.2); Has 115 Blast hits to 115 proteins
in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0;
Fungi - 0; Plants - 115; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr1:8712758-8712985
REVERSE LENGTH=75
Length = 75
Score = 70.5 bits (171), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 48/72 (66%), Gaps = 5/72 (6%)
Query: 16 VNTTGLMEIHSA-----QGELMRQPSMTKTNCLCSPTTHAGSFRCRLHRTPSFQRTKSME 70
+N G ME ++ G L RQ S+TKT C+CSPTTH GSF+C+LHRTPS QR KS+E
Sbjct: 1 MNDKGNMETEASIAAMGLGGLSRQTSITKTICICSPTTHPGSFKCKLHRTPSLQRNKSVE 60
Query: 71 SSTRQDAVGIPN 82
++ Q + P+
Sbjct: 61 TNILQSLMTKPD 72
>AT5G55980.1 | Symbols: | serine-rich protein-related |
chr5:22670301-22670642 FORWARD LENGTH=113
Length = 113
Score = 52.4 bits (124), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 23/34 (67%), Positives = 25/34 (73%)
Query: 38 TKTNCLCSPTTHAGSFRCRLHRTPSFQRTKSMES 71
T+ NCLCSPTTHAGSFRCR HR S R S+ S
Sbjct: 60 TRLNCLCSPTTHAGSFRCRYHRVDSLTRAGSIGS 93
>AT5G20370.1 | Symbols: | serine-rich protein-related |
chr5:6886931-6887458 REVERSE LENGTH=175
Length = 175
Score = 47.8 bits (112), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 26/36 (72%)
Query: 38 TKTNCLCSPTTHAGSFRCRLHRTPSFQRTKSMESST 73
TK CLCSPTTH GSFRC HR +++K++ SST
Sbjct: 67 TKRKCLCSPTTHPGSFRCSFHRRLEHEKSKTLASST 102