Miyakogusa Predicted Gene

Lj2g3v1436870.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1436870.1 Non Chatacterized Hit- tr|D8T1S9|D8T1S9_SELML
Putative uncharacterized protein OS=Selaginella moelle,31.91,4e-18,A
Receptor for Ubiquitination Targets,F-box domain, cyclin-like; no
description,NULL; SUBFAMILY NOT ,CUFF.37047.1
         (239 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G03750.2 | Symbols: SUVR3, SDG20 | SET domain protein 20 | ch...   131   4e-31
AT3G03750.1 | Symbols: SUVR3, SDG20 | SET domain protein 20 | ch...   114   8e-26

>AT3G03750.2 | Symbols: SUVR3, SDG20 | SET domain protein 20 |
           chr3:939976-941511 FORWARD LENGTH=354
          Length = 354

 Score =  131 bits (330), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 90/232 (38%), Positives = 118/232 (50%), Gaps = 33/232 (14%)

Query: 18  IECAELVLPYLTPPELANVSMTCKSLRQVSHSITLRRSSDASRSFENFPVPFLNTTYPP- 76
           + CA L+LP+L P ELA V+ TCK+L  +S S+T+ RS DA+RS EN  +PF N+     
Sbjct: 29  LRCANLILPWLNPRELAVVAQTCKTLSLISKSLTIHRSLDAARSLENISIPFHNSIDSQR 88

Query: 77  YAHFIYTP-SLLLSSQHLPRQPWGG---------RSVISPAPALSAESVSLVDESGRVVS 126
           YA+FIYTP  +  SS   PRQ WG          R             VSLVDE     S
Sbjct: 89  YAYFIYTPFQIPASSPPPPRQWWGAAANECGSESRPCFDSVSESGRFGVSLVDE-----S 143

Query: 127 GCDCRDACSDCPCSCL--DGL-DVXXXXXXXXXXXXXXXXXXXQKGVAVRVKIVRDGRKG 183
           GC+C + C +  C CL   G+ ++                   QKGV+V +KIVRD +KG
Sbjct: 144 GCEC-ERCEEGYCKCLAFAGMEEIANECGSGCGCGSDCSNRVTQKGVSVSLKIVRDEKKG 202

Query: 184 WALCADQFIRKGQFVFEYAGNLKNRILEKSFMQIIVFQKMASEAENIYDLFK 235
           W L ADQ I++GQF+ EYAG L             +    A   +NIYD  +
Sbjct: 203 WCLYADQLIKQGQFICEYAGEL-------------LTTDEARRRQNIYDKLR 241


>AT3G03750.1 | Symbols: SUVR3, SDG20 | SET domain protein 20 |
           chr3:939976-941511 FORWARD LENGTH=338
          Length = 338

 Score =  114 bits (284), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 77/193 (39%), Positives = 102/193 (52%), Gaps = 20/193 (10%)

Query: 18  IECAELVLPYLTPPELANVSMTCKSLRQVSHSITLRRSSDASRSFENFPVPFLNTTYPP- 76
           + CA L+LP+L P ELA V+ TCK+L  +S S+T+ RS DA+RS EN  +PF N+     
Sbjct: 29  LRCANLILPWLNPRELAVVAQTCKTLSLISKSLTIHRSLDAARSLENISIPFHNSIDSQR 88

Query: 77  YAHFIYTP-SLLLSSQHLPRQPWGG---------RSVISPAPALSAESVSLVDESGRVVS 126
           YA+FIYTP  +  SS   PRQ WG          R             VSLVDE     S
Sbjct: 89  YAYFIYTPFQIPASSPPPPRQWWGAAANECGSESRPCFDSVSESGRFGVSLVDE-----S 143

Query: 127 GCDCRDACSDCPCSCL--DGL-DVXXXXXXXXXXXXXXXXXXXQKGVAVRVKIVRDGRKG 183
           GC+C + C +  C CL   G+ ++                   QKGV+V +KIVRD +KG
Sbjct: 144 GCEC-ERCEEGYCKCLAFAGMEEIANECGSGCGCGSDCSNRVTQKGVSVSLKIVRDEKKG 202

Query: 184 WALCADQFIRKGQ 196
           W L ADQ I++ +
Sbjct: 203 WCLYADQLIKQAR 215