Miyakogusa Predicted Gene

Lj2g3v1415460.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1415460.1 tr|Q748V7|Q748V7_GEOSL SEL1 repeat-containing
protein OS=Geobacter sulfurreducens (strain ATCC
51573,39.2,1e-18,HCP-like,NULL; F-box domain,F-box domain,
cyclin-like; FBOX,F-box domain, cyclin-like; SEL-1-LIKE
PR,CUFF.37022.1
         (333 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G70590.1 | Symbols:  | F-box family protein | chr1:26618403-2...   389   e-108
AT1G18260.1 | Symbols:  | HCP-like superfamily protein | chr1:62...    67   2e-11
AT1G73570.1 | Symbols:  | HCP-like superfamily protein | chr1:27...    55   6e-08

>AT1G70590.1 | Symbols:  | F-box family protein |
           chr1:26618403-26620159 FORWARD LENGTH=351
          Length = 351

 Score =  389 bits (998), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 186/288 (64%), Positives = 232/288 (80%), Gaps = 4/288 (1%)

Query: 50  GDFSALPYDVLAKVAASFDQPNLRAASLVCRSWREALQPLREAMVLLMWGKRFKHGQRGV 109
           GDFS LPYD+L K+AA F  PNL+AASLVC+SWR+AL+PLRE+M+L+ WGK++KHG+ GV
Sbjct: 63  GDFSMLPYDILMKIAAPFSHPNLQAASLVCKSWRDALKPLRESMLLIRWGKKYKHGRGGV 122

Query: 110 RPNIDKALDSFMKAAARGSALAMVDAGLIHWERGEKQMALHLYLKAAELGNPSAQCNLGI 169
           R N+DKALDSF+K A RGS LAMVDAGL++WERGEK+ A++LY +A+ELG+   QCNLGI
Sbjct: 123 RANLDKALDSFLKGAMRGSTLAMVDAGLVYWERGEKEKAVNLYRRASELGDAVGQCNLGI 182

Query: 170 SYLQVEPPNTEQALKWLYKASISGNVRAQYQLALSLHRGSGSNRNMDEAVKWYLKAAEGG 229
           +YLQV+P N ++A+KWL +++ +G VRAQYQLAL LH G     N+ EA KWYLKAAEGG
Sbjct: 183 AYLQVQPSNPKEAMKWLKQSAENGYVRAQYQLALCLHHGRVVQTNLLEATKWYLKAAEGG 242

Query: 230 YARAMYNTSLCYSFGEGLTHSHKLARKWMKRAADRGHSKAQFEHGLALFSEGDLMKALVY 289
           Y RAMYN SLCYS GEGL  + KLARKWMKRAAD GHSKAQFEHGLALFSEG+++K+++Y
Sbjct: 243 YVRAMYNISLCYSVGEGLPQNRKLARKWMKRAADHGHSKAQFEHGLALFSEGEMLKSVLY 302

Query: 290 LELATRAGEKGASHVKNAVVHRLSAA----SRDHAMHLADSWRALPSS 333
           LELA R GE  A+ VK  V  +LSA     +  HA+H A++WR LP +
Sbjct: 303 LELAERGGEAAATPVKEVVHQQLSATFGGQAVHHAIHQANNWRPLPVT 350


>AT1G18260.1 | Symbols:  | HCP-like superfamily protein |
           chr1:6279047-6282008 REVERSE LENGTH=678
          Length = 678

 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 62/210 (29%), Positives = 101/210 (48%), Gaps = 12/210 (5%)

Query: 99  GKRFKHGQRGVRPNIDKALDSFMKAAARGSALAMVDAGLIH-----WERGEKQMALHLYL 153
           G  +  G RG+R +  KAL  F+KA  +G   +M   G I+      ER   + AL    
Sbjct: 249 GLFYYFGLRGLRRDHTKALHWFLKAVDKGEPRSMELLGEIYARGAGVERNYTK-ALEWLT 307

Query: 154 KAAELGNPSAQCNLGISYLQ---VEPPNTEQALKWLYKASISGNVRAQYQLALSLHRGSG 210
            AA+ G  SA   +G  Y++   V+  N  +A ++  KA  + +    Y L +   +G G
Sbjct: 308 LAAKEGLYSAFNGIGYLYVKGYGVDKKNYTKAREYFEKAVDNEDPSGHYNLGVLYLKGIG 367

Query: 211 SNRNMDEAVKWYLKAAEGGYARAMYNTSLCYSFGEGLTHSHKLARKWMKRAADRGHSKAQ 270
            NR++ +A K++  AA  G  +A Y  +  +  G GL  + ++A  + K  A+RG   + 
Sbjct: 368 VNRDVRQATKYFFVAANAGQPKAFYQLAKMFHTGVGLKKNLEMATSFYKLVAERGPWSSL 427

Query: 271 FEHGLALFSEGDLMKALVYLELATRAGEKG 300
               L  + +GD+ KAL+   L +R  E G
Sbjct: 428 SRWALEAYLKGDVGKALI---LYSRMAEMG 454



 Score = 51.6 bits (122), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 75/168 (44%), Gaps = 14/168 (8%)

Query: 104 HGQRGVRPNIDKALDSFMKAAARGSALAMVDAGLIHWERGEKQMALHLYLKAAELGNPSA 163
           H   G++ N++ A   +   A RG   ++    L  + +G+   AL LY + AE+G   A
Sbjct: 399 HTGVGLKKNLEMATSFYKLVAERGPWSSLSRWALEAYLKGDVGKALILYSRMAEMGYEVA 458

Query: 164 QCN--------------LGISYLQVEPPNTEQALKWLYKASISGNVRAQYQLALSLHRGS 209
           Q N              +G+S    +    E+A    ++AS  GN  A   +  + + G 
Sbjct: 459 QSNAAWILDKYGERSMCMGVSGFCTDKERHERAHSLWWRASEQGNEHAALLIGDAYYYGR 518

Query: 210 GSNRNMDEAVKWYLKAAEGGYARAMYNTSLCYSFGEGLTHSHKLARKW 257
           G+ R+   A + Y+ A     A+AM+N    +  G+GL     LA+++
Sbjct: 519 GTERDFVRAAEAYMHAKSQSNAQAMFNLGYMHEHGQGLPFDLHLAKRY 566



 Score = 51.6 bits (122), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 82/186 (44%), Gaps = 10/186 (5%)

Query: 134 DAGLIHWERGEKQMALHLYLKAAELGNPSAQCNLGISY---LQVEPPNTEQALKWLYKAS 190
           + G +   RGE+     +    A+ GN +A   +G+ Y   L+    +  +AL W  KA 
Sbjct: 215 NKGALRKSRGEEDEDFQILEYQAQKGNANAMYKIGLFYYFGLRGLRRDHTKALHWFLKAV 274

Query: 191 ISGNVRAQYQLALSLHRGSGSNRNMDEAVKWYLKAAEGGYARAMYNTSLCYSFGEGLT-H 249
             G  R+   L     RG+G  RN  +A++W   AA+ G   A       Y  G G+   
Sbjct: 275 DKGEPRSMELLGEIYARGAGVERNYTKALEWLTLAAKEGLYSAFNGIGYLYVKGYGVDKK 334

Query: 250 SHKLARKWMKRAADRGHSKAQFEHGLALFSEG-----DLMKALVYLELATRAGEKGASHV 304
           ++  AR++ ++A D       +  G+ L+ +G     D+ +A  Y  +A  AG+  A + 
Sbjct: 335 NYTKAREYFEKAVDNEDPSGHYNLGV-LYLKGIGVNRDVRQATKYFFVAANAGQPKAFYQ 393

Query: 305 KNAVVH 310
              + H
Sbjct: 394 LAKMFH 399


>AT1G73570.1 | Symbols:  | HCP-like superfamily protein |
           chr1:27650992-27653942 FORWARD LENGTH=604
          Length = 604

 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 100/221 (45%), Gaps = 18/221 (8%)

Query: 88  PLREAMVLLMWGKRFKHGQRGVRPNIDKALDSFMKAAARGSALAMVDAGLIHWE-----R 142
           P+ E + + +  +  K   R  R   D+        A +G+++AM   GL ++      R
Sbjct: 202 PMAEPVRIHIGTEENKDALRKSRGEEDEDFQILEYQAEKGNSVAMHKIGLFYYFGLRGLR 261

Query: 143 GEKQMALHLYLKAAELGNPSAQCNLGISYLQ---VEPPNTEQALKWLYKASISGNVRAQY 199
            +   AL+ + KA   G       LG  Y++   V+  N  +A ++   A+ + +    Y
Sbjct: 262 RDHAKALYWFSKAEFNG-------LGYLYVKGYGVDKRNYTKAREYFEMAANNEDPSGHY 314

Query: 200 QLALSLHRGSGSNRNMDEAVKWYLKAAEGGYARAMYNTSLCYSFGEGLTHSHKLARKWMK 259
            L +   +G+G  +++  A K++  AA  G  +A Y  +  +  G GLT + ++A  + K
Sbjct: 315 NLGVLYLKGTGVKKDVRHATKYFFVAANAGQPKAFYQLAKMFHTGVGLTKNLEMATTFYK 374

Query: 260 RAADRGHSKAQFEHGLALFSEGDLMKALVYLELATRAGEKG 300
             A+RG   +     L  + +GD+ KA +   L +R  E G
Sbjct: 375 LVAERGPWSSLSRWALEAYLKGDVGKAFI---LYSRMSELG 412



 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 74/172 (43%), Gaps = 14/172 (8%)

Query: 104 HGQRGVRPNIDKALDSFMKAAARGSALAMVDAGLIHWERGEKQMALHLYLKAAELGNPSA 163
           H   G+  N++ A   +   A RG   ++    L  + +G+   A  LY + +ELG   A
Sbjct: 357 HTGVGLTKNLEMATTFYKLVAERGPWSSLSRWALEAYLKGDVGKAFILYSRMSELGYEVA 416

Query: 164 QCN--------------LGISYLQVEPPNTEQALKWLYKASISGNVRAQYQLALSLHRGS 209
           Q N              +G+     +    ++A    ++AS  GN  A   +  + + G 
Sbjct: 417 QSNAAWIVDKYGERSMCMGVYGFCTDKERHDRAHSLWWRASEQGNEHAALLIGDAYYYGR 476

Query: 210 GSNRNMDEAVKWYLKAAEGGYARAMYNTSLCYSFGEGLTHSHKLARKWMKRA 261
           G+ R+   A + Y+ A     A+AM+N    +  GEGL     LA+++  +A
Sbjct: 477 GTERDFVRAAEAYMYAKSQSNAQAMFNLGYMHEHGEGLPFDLHLAKRYYDQA 528