Miyakogusa Predicted Gene
- Lj2g3v1415210.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v1415210.1 tr|G7K060|G7K060_MEDTR Knotted-1 homeobox protein
OS=Medicago truncatula GN=MTR_5g033720 PE=3
SV=1,84.48,0,Homeodomain-like,Homeodomain-like; seg,NULL; ELK,ELK;
HOMEOBOX PROTEIN TRANSCRIPTION FACTORS,NULL; n,CUFF.36998.1
(272 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G23380.1 | Symbols: KNAT6, KNAT6L, KNAT6S | KNOTTED1-like hom... 329 1e-90
AT1G23380.2 | Symbols: KNAT6, KNAT6L, KNAT6S | KNOTTED1-like hom... 324 3e-89
AT1G70510.1 | Symbols: KNAT2, ATK1 | KNOTTED-like from Arabidops... 307 6e-84
AT4G08150.1 | Symbols: KNAT1, BP, BP1 | KNOTTED-like from Arabid... 179 2e-45
AT1G62360.1 | Symbols: STM, BUM1, SHL, WAM1, BUM, WAM | KNOX/ELK... 167 7e-42
AT1G62990.1 | Symbols: KNAT7, IXR11 | KNOTTED-like homeobox of A... 74 8e-14
AT4G32040.1 | Symbols: KNAT5 | KNOTTED1-like homeobox gene 5 | c... 72 3e-13
AT5G11060.1 | Symbols: KNAT4 | KNOTTED1-like homeobox gene 4 | c... 70 1e-12
AT5G25220.2 | Symbols: KNAT3 | KNOTTED1-like homeobox gene 3 | c... 68 8e-12
AT5G25220.1 | Symbols: KNAT3 | KNOTTED1-like homeobox gene 3 | c... 67 1e-11
AT1G14760.2 | Symbols: KNATM | KNOX Arabidopsis thaliana meinox ... 55 4e-08
>AT1G23380.1 | Symbols: KNAT6, KNAT6L, KNAT6S | KNOTTED1-like
homeobox gene 6 | chr1:8297499-8302492 REVERSE
LENGTH=327
Length = 327
Score = 329 bits (844), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 175/289 (60%), Positives = 210/289 (72%), Gaps = 18/289 (6%)
Query: 1 MDEMYGVPSTAEYADKA--LMPPENLIFPADYHSFLMSSSTADRIP-MFGSDDFFS---- 53
MD MY S +Y+DK+ +M PE+L+FP+DY + L SS+ +R+ +FGSD+ S
Sbjct: 1 MDGMYNFHSAGDYSDKSVLMMSPESLMFPSDYQALLCSSAGENRVSDVFGSDELLSVAVS 60
Query: 54 -------SAEPSSAGNQDDVASTVMKAKIASHPQYPRLLQAYIECQKVGAPPEIAGLLEE 106
S P N D+V+ TV+KAKIA HP YPRLLQAYI+CQKVGAPPEIA LLEE
Sbjct: 61 ALSSEAASIAPEIRRNDDNVSLTVIKAKIACHPSYPRLLQAYIDCQKVGAPPEIACLLEE 120
Query: 107 IRRENDLCKRDVV-STCFGADPELDEFMESYCDMLVKYKSDLARPFDEASNFLNKIEMQL 165
I+RE+D+ K++VV S+CFGADPELDEFME+YCD+LVKYKSDLARPFDEA+ FLNKIEMQL
Sbjct: 121 IQRESDVYKQEVVPSSCFGADPELDEFMETYCDILVKYKSDLARPFDEATCFLNKIEMQL 180
Query: 166 SNLCTGA-SVPTLSDEGGVSSDEEFSTGDGD-AQDGQQLRGEDRELKDRLLRKFGSHIGT 223
NLCTG S +S++G +SSDEE S GD + A+DG+Q R EDR+LKDRLLRKFGS I T
Sbjct: 181 RNLCTGVESARGVSEDGVISSDEELSGGDHEVAEDGRQ-RCEDRDLKDRLLRKFGSRIST 239
Query: 224 XXXXXXXXXXXXXXXXEARQTLLQWWNVHYKWPYPTESDKIELAKATGL 272
EARQ LL WWN+HYKWPYPTE DKI LA ATGL
Sbjct: 240 LKLEFSKKKKKGKLPREARQALLDWWNLHYKWPYPTEGDKIALADATGL 288
>AT1G23380.2 | Symbols: KNAT6, KNAT6L, KNAT6S | KNOTTED1-like
homeobox gene 6 | chr1:8297499-8302492 REVERSE
LENGTH=329
Length = 329
Score = 324 bits (831), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 175/291 (60%), Positives = 210/291 (72%), Gaps = 20/291 (6%)
Query: 1 MDEMYGVPSTAEYADKA--LMPPENLIFPADYHSFLMSSSTADRIP-MFGSDDFFS---- 53
MD MY S +Y+DK+ +M PE+L+FP+DY + L SS+ +R+ +FGSD+ S
Sbjct: 1 MDGMYNFHSAGDYSDKSVLMMSPESLMFPSDYQALLCSSAGENRVSDVFGSDELLSVAVS 60
Query: 54 -------SAEPSSAGNQDDVASTVMKAKIASHPQYPRLLQAYIECQK--VGAPPEIAGLL 104
S P N D+V+ TV+KAKIA HP YPRLLQAYI+CQK VGAPPEIA LL
Sbjct: 61 ALSSEAASIAPEIRRNDDNVSLTVIKAKIACHPSYPRLLQAYIDCQKKQVGAPPEIACLL 120
Query: 105 EEIRRENDLCKRDVV-STCFGADPELDEFMESYCDMLVKYKSDLARPFDEASNFLNKIEM 163
EEI+RE+D+ K++VV S+CFGADPELDEFME+YCD+LVKYKSDLARPFDEA+ FLNKIEM
Sbjct: 121 EEIQRESDVYKQEVVPSSCFGADPELDEFMETYCDILVKYKSDLARPFDEATCFLNKIEM 180
Query: 164 QLSNLCTGA-SVPTLSDEGGVSSDEEFSTGDGD-AQDGQQLRGEDRELKDRLLRKFGSHI 221
QL NLCTG S +S++G +SSDEE S GD + A+DG+Q R EDR+LKDRLLRKFGS I
Sbjct: 181 QLRNLCTGVESARGVSEDGVISSDEELSGGDHEVAEDGRQ-RCEDRDLKDRLLRKFGSRI 239
Query: 222 GTXXXXXXXXXXXXXXXXEARQTLLQWWNVHYKWPYPTESDKIELAKATGL 272
T EARQ LL WWN+HYKWPYPTE DKI LA ATGL
Sbjct: 240 STLKLEFSKKKKKGKLPREARQALLDWWNLHYKWPYPTEGDKIALADATGL 290
>AT1G70510.1 | Symbols: KNAT2, ATK1 | KNOTTED-like from Arabidopsis
thaliana 2 | chr1:26576635-26582145 FORWARD LENGTH=310
Length = 310
Score = 307 bits (786), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 161/278 (57%), Positives = 193/278 (69%), Gaps = 12/278 (4%)
Query: 1 MDEMYGVPSTAEYADKALMPPENLIFPADYHSFLMSSSTADRIPMFGSDDFFSSAE---- 56
MD M G ST +Y++KA L+ P+DY S L+ S+T D +FGSD+ ++
Sbjct: 1 MDRMCGFRSTEDYSEKA-----TLMMPSDYQS-LICSTTGDNQRLFGSDELATALSSELL 54
Query: 57 PSSAGNQDDVASTVMKAKIASHPQYPRLLQAYIECQKVGAPPEIAGLLEEIRRENDLCKR 116
P +D+ + +V+K+KIASHP YPRLLQ YI+CQKVGAP EIA +LEEI+REN + KR
Sbjct: 55 PRIRKAEDNFSLSVIKSKIASHPLYPRLLQTYIDCQKVGAPMEIACILEEIQRENHVYKR 114
Query: 117 DVVS-TCFGADPELDEFMESYCDMLVKYKSDLARPFDEASNFLNKIEMQLSNLCTG-ASV 174
DV +CFGADPELDEFME+YCD+LVKYK+DLARPFDEA+ F+NKIEMQL NLCTG AS
Sbjct: 115 DVAPLSCFGADPELDEFMETYCDILVKYKTDLARPFDEATTFINKIEMQLQNLCTGPASA 174
Query: 175 PTLSDEGGVSSDEEFSTGDGDAQDGQQLRGEDRELKDRLLRKFGSHIGTXXXXXXXXXXX 234
LSD+G VSSDEE D A D Q R DR+LKD+LLRKFGSHI +
Sbjct: 175 TALSDDGAVSSDEELREDDDIAADDSQQRSNDRDLKDQLLRKFGSHISSLKLEFSKKKKK 234
Query: 235 XXXXXEARQTLLQWWNVHYKWPYPTESDKIELAKATGL 272
EARQ LL WWNVH KWPYPTE DKI LA+ TGL
Sbjct: 235 GKLPREARQALLDWWNVHNKWPYPTEGDKISLAEETGL 272
>AT4G08150.1 | Symbols: KNAT1, BP, BP1 | KNOTTED-like from
Arabidopsis thaliana | chr4:5147969-5150610 REVERSE
LENGTH=398
Length = 398
Score = 179 bits (454), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 95/214 (44%), Positives = 128/214 (59%), Gaps = 14/214 (6%)
Query: 70 VMKAKIASHPQYPRLLQAYIECQKVGAPPEIAGLLEEIRRENDLCKRDVVST----CFGA 125
MKAKI +HP Y LLQAY++CQK+GAPP++ + R+ D R ST
Sbjct: 133 AMKAKIIAHPHYSTLLQAYLDCQKIGAPPDVVDRITAARQ--DFEARQQRSTPSVSASSR 190
Query: 126 DPELDEFMESYCDMLVKYKSDLARPFDEASNFLNKIEMQLSNLCTGASVPTLSDEGGV-- 183
DPELD+FME+YCDMLVKY+ +L RP EA F+ +IE QLS LC + + L++ G
Sbjct: 191 DPELDQFMEAYCDMLVKYREELTRPIQEAMEFIRRIESQLSMLCQ-SPIHILNNPDGKSD 249
Query: 184 ---SSDEEFSTGDGDAQDGQQL--RGEDRELKDRLLRKFGSHIGTXXXXXXXXXXXXXXX 238
SSDEE G + ++ R EDRELK+ LL+K+ ++ +
Sbjct: 250 NMGSSDEEQENNSGGETELPEIDPRAEDRELKNHLLKKYSGYLSSLKQELSKKKKKGKLP 309
Query: 239 XEARQTLLQWWNVHYKWPYPTESDKIELAKATGL 272
EARQ LL WW +HYKWPYP+ES+K+ LA++TGL
Sbjct: 310 KEARQKLLTWWELHYKWPYPSESEKVALAESTGL 343
>AT1G62360.1 | Symbols: STM, BUM1, SHL, WAM1, BUM, WAM | KNOX/ELK
homeobox transcription factor | chr1:23058796-23061722
REVERSE LENGTH=382
Length = 382
Score = 167 bits (423), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 91/209 (43%), Positives = 119/209 (56%), Gaps = 10/209 (4%)
Query: 71 MKAKIASHPQYPRLLQAYIECQKVGAPPEIAGLLEEIRRENDLCKRDVVST-CFGADPEL 129
+KAKI +HP Y RLL AY+ CQKVGAPPE+ LEE + T C G DP L
Sbjct: 121 VKAKIMAHPHYHRLLAAYVNCQKVGAPPEVVARLEEACSSAAAAAASMGPTGCLGEDPGL 180
Query: 130 DEFMESYCDMLVKYKSDLARPFDEASNFLNKIEMQLSNLCTGASVP------TLSDEGGV 183
D+FME+YC+MLVKY+ +L++PF EA FL ++E Q +L + T D
Sbjct: 181 DQFMEAYCEMLVKYEQELSKPFKEAMVFLQRVECQFKSLSLSSPSSFSGYGETAIDRNNN 240
Query: 184 SSDEEFSTGDGDAQDGQQLRGEDRELKDRLLRKFGSHIGTXXXXXXXXXXXXXXXXEARQ 243
S EE + + D Q EDRELK +LLRK+ ++G+ EARQ
Sbjct: 241 GSSEEEVDMNNEFVDPQ---AEDRELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQ 297
Query: 244 TLLQWWNVHYKWPYPTESDKIELAKATGL 272
LL WW+ HYKWPYP+E K+ LA++TGL
Sbjct: 298 QLLDWWSRHYKWPYPSEQQKLALAESTGL 326
>AT1G62990.1 | Symbols: KNAT7, IXR11 | KNOTTED-like homeobox of
Arabidopsis thaliana 7 | chr1:23337468-23340348 FORWARD
LENGTH=291
Length = 291
Score = 74.3 bits (181), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 67/234 (28%), Positives = 96/234 (41%), Gaps = 36/234 (15%)
Query: 71 MKAKIASHPQYPRLLQAYIECQKVGAPPEIAGLLEEIRRENDLCKRDVVSTCFGADP--- 127
+K +IA+HP Y +LL A++ C +V P + ++E ++ R ST G
Sbjct: 29 LKGEIATHPMYEQLLAAHVACLRVATPIDQLPIIEAQLSQSHHLLRSYASTAVGYHHDRH 88
Query: 128 ELDEFMESYCDMLVKYKSDLARPFD----EASNFLNKIEMQLSNLCTGASVPTLSDEGGV 183
ELD F+ Y +L +K L + EA +IE L +L TGA TL + G
Sbjct: 89 ELDNFLAQYVMVLCSFKEQLQQHVRVHAVEAVMACREIENNLHSL-TGA---TLGEGSGA 144
Query: 184 SSDEE-------FSTGDG--DAQDGQQLRG----------------EDRELKDRLLRKFG 218
+ E+ FS+ + D G + G +ELK L + F
Sbjct: 145 TMSEDEDDLPMDFSSDNSGVDFSGGHDMTGFGPLLPTESERSLMERVRQELKLELKQGFK 204
Query: 219 SHIGTXXXXXXXXXXXXXXXXEARQTLLQWWNVHYKWPYPTESDKIELAKATGL 272
S I + L WW H KWPYPTE DK +L + TGL
Sbjct: 205 SRIEDVREEIMRKRRAGKLPGDTTTVLKNWWQQHCKWPYPTEDDKAKLVEETGL 258
>AT4G32040.1 | Symbols: KNAT5 | KNOTTED1-like homeobox gene 5 |
chr4:15494127-15496009 FORWARD LENGTH=383
Length = 383
Score = 72.4 bits (176), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 68/240 (28%), Positives = 93/240 (38%), Gaps = 36/240 (15%)
Query: 64 DDVASTVMKAKIASHPQYPRLLQAYIECQKVGAP----PEIAGLLEEIRRENDLCKRDVV 119
+D S KA I HP Y +LL A++ C +V P P I L ++ + + +
Sbjct: 111 EDWRSASYKAAILRHPMYEQLLAAHVACLRVATPVDQIPRIDAQLSQL---HTVAAKYST 167
Query: 120 STCFGADPELDEFMESYCDMLVKYKSDLARPF----DEASNFLNKIEMQLSNLCTGASVP 175
+ ELD FM Y +L +K L EA +IE L +L TG S P
Sbjct: 168 LGVVVDNKELDHFMSHYVVLLCSFKEQLQHHVCVHAMEAITACWEIEQSLQSL-TGVS-P 225
Query: 176 TLSDEGGVSSDE-------EFSTGDGDAQDGQQLRG----------------EDRELKDR 212
+ S+ +S DE E + DG L G +ELK
Sbjct: 226 SESNGKTMSDDEDDNQVESEVNMFDGSLDGSDCLMGFGPLVPTERERSLMERVKKELKHE 285
Query: 213 LLRKFGSHIGTXXXXXXXXXXXXXXXXEARQTLLQWWNVHYKWPYPTESDKIELAKATGL 272
L + F I + L +WW H KWPYPTE DK +L + TGL
Sbjct: 286 LKQGFKEKIVDIREEIMRKRRAGKLPGDTTSVLKEWWRTHSKWPYPTEEDKAKLVQETGL 345
>AT5G11060.1 | Symbols: KNAT4 | KNOTTED1-like homeobox gene 4 |
chr5:3510408-3512967 FORWARD LENGTH=393
Length = 393
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 75/276 (27%), Positives = 104/276 (37%), Gaps = 38/276 (13%)
Query: 32 SFLMSSSTADRIPMFGSDDFFS---SAEPSSAGNQDDV---ASTVMKAKIASHPQYPRLL 85
SFL +TA+ S D E S G + + + KA+I SHP Y +LL
Sbjct: 78 SFLQRGNTANNNNNETSGDVIEDVPGGEESMIGEKKEAERWQNARHKAEILSHPLYEQLL 137
Query: 86 QAYIECQKVGAP----PEIAGLLEEIRRENDLCKRDVVSTCFGA----DPELDEFMESYC 137
A++ C ++ P P I L + +N + K + G D ELD FM Y
Sbjct: 138 SAHVACLRIATPVDQLPRIDAQLAQ--SQNVVAKYSTLEAAQGLLAGDDKELDHFMTHYV 195
Query: 138 DMLVKYKSDLARPFD----EASNFLNKIEMQLSNLC-------TGASVPTLSDEGGVSSD 186
+L +K L + EA +IE L + TGA++ DE V SD
Sbjct: 196 LLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSFTGVSPGEGTGATMSEDEDEQ-VESD 254
Query: 187 EEFSTGDGDA----------QDGQQLRGEDRELKDRLLRKFGSHIGTXXXXXXXXXXXXX 236
G D + + +ELK L + + I
Sbjct: 255 AHLFDGSLDGLGFGPLVPTESERSLMERVRQELKHELKQGYKEKIVDIREEILRKRRAGK 314
Query: 237 XXXEARQTLLQWWNVHYKWPYPTESDKIELAKATGL 272
+ L WW H KWPYPTE DK L + TGL
Sbjct: 315 LPGDTTSVLKSWWQSHSKWPYPTEEDKARLVQETGL 350
>AT5G25220.2 | Symbols: KNAT3 | KNOTTED1-like homeobox gene 3 |
chr5:8736208-8738087 FORWARD LENGTH=419
Length = 419
Score = 67.8 bits (164), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 92/230 (40%), Gaps = 32/230 (13%)
Query: 72 KAKIASHPQYPRLLQAYIECQKVGAP----PEIAGLLEEIRRENDLCKRDVVSTC----F 123
KA+I SHP Y +LL A++ C ++ P P I L + ++ + K +
Sbjct: 160 KAEILSHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQ--SQHVVAKYSALGAAAQGLV 217
Query: 124 GADPELDEFMESYCDMLVKYKSDLARPFD----EASNFLNKIEMQLSNLCTGAS-----V 174
G D ELD+FM Y +L +K L + EA +IE L +L TG S
Sbjct: 218 GDDKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSL-TGVSPGEGMG 276
Query: 175 PTLSDEG--GVSSDEEFSTGDGDA----------QDGQQLRGEDRELKDRLLRKFGSHIG 222
T+SD+ V SD G D + + +ELK L + + I
Sbjct: 277 ATMSDDEDEQVESDANMFDGGLDVLGFGPLIPTESERSLMERVRQELKHELKQGYKEKIV 336
Query: 223 TXXXXXXXXXXXXXXXXEARQTLLQWWNVHYKWPYPTESDKIELAKATGL 272
+ L WW H KWPYPTE DK L + TGL
Sbjct: 337 DIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGL 386
>AT5G25220.1 | Symbols: KNAT3 | KNOTTED1-like homeobox gene 3 |
chr5:8736208-8738115 FORWARD LENGTH=431
Length = 431
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 92/230 (40%), Gaps = 32/230 (13%)
Query: 72 KAKIASHPQYPRLLQAYIECQKVGAP----PEIAGLLEEIRRENDLCKRDVVSTC----F 123
KA+I SHP Y +LL A++ C ++ P P I L + ++ + K +
Sbjct: 160 KAEILSHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQ--SQHVVAKYSALGAAAQGLV 217
Query: 124 GADPELDEFMESYCDMLVKYKSDLARPFD----EASNFLNKIEMQLSNLCTGAS-----V 174
G D ELD+FM Y +L +K L + EA +IE L +L TG S
Sbjct: 218 GDDKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSL-TGVSPGEGMG 276
Query: 175 PTLSDEG--GVSSDEEFSTGDGDA----------QDGQQLRGEDRELKDRLLRKFGSHIG 222
T+SD+ V SD G D + + +ELK L + + I
Sbjct: 277 ATMSDDEDEQVESDANMFDGGLDVLGFGPLIPTESERSLMERVRQELKHELKQGYKEKIV 336
Query: 223 TXXXXXXXXXXXXXXXXEARQTLLQWWNVHYKWPYPTESDKIELAKATGL 272
+ L WW H KWPYPTE DK L + TGL
Sbjct: 337 DIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGL 386
>AT1G14760.2 | Symbols: KNATM | KNOX Arabidopsis thaliana meinox |
chr1:5084530-5085213 REVERSE LENGTH=138
Length = 138
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 55/107 (51%), Gaps = 6/107 (5%)
Query: 70 VMKAKIASHPQYPRLLQAYIECQKVGA----PPEIAGLLEEIRRENDLCKRDVVSTCFGA 125
++K +I+SHP Y LL +++ C KV + PEI +++ D S+
Sbjct: 32 ILKKRISSHPLYGLLLHSHLNCLKVCSGDFDSPEIMNTADDLALSKLSLHPD--SSSEAT 89
Query: 126 DPELDEFMESYCDMLVKYKSDLARPFDEASNFLNKIEMQLSNLCTGA 172
ELD+FME+YC L + K + +P E F++ + QL+++ +
Sbjct: 90 SSELDQFMEAYCSTLRELKEAMEKPLTETHRFVDAVYTQLNDIVMSS 136