Miyakogusa Predicted Gene

Lj2g3v1414970.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1414970.1 tr|G7K086|G7K086_MEDTR Axial regulator YABBY
OS=Medicago truncatula GN=MTR_5g034030 PE=4 SV=1,86.18,0,SUBFAMILY NOT
NAMED,NULL; FAMILY NOT NAMED,NULL; YABBY,YABBY protein,CUFF.36981.1
         (216 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G23420.1 | Symbols: INO | Plant-specific transcription factor...   220   5e-58
AT2G26580.2 | Symbols: YAB5 | plant-specific transcription facto...   149   1e-36
AT2G26580.1 | Symbols: YAB5 | plant-specific transcription facto...   149   1e-36
AT1G08465.1 | Symbols: YAB2 | Plant-specific transcription facto...   147   7e-36
AT2G45190.1 | Symbols: AFO, FIL, YAB1 | Plant-specific transcrip...   144   4e-35
AT4G00180.1 | Symbols: YAB3 | Plant-specific transcription facto...   132   1e-31
AT4G00180.2 | Symbols: YAB3 | Plant-specific transcription facto...   109   1e-24
AT1G69180.1 | Symbols: CRC | Plant-specific transcription factor...   106   1e-23

>AT1G23420.1 | Symbols: INO | Plant-specific transcription factor
           YABBY family protein | chr1:8317423-8319104 FORWARD
           LENGTH=231
          Length = 231

 Score =  220 bits (561), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 134/226 (59%), Positives = 161/226 (71%), Gaps = 14/226 (6%)

Query: 2   STLNHLFDLPEQICYVQCGFCTTILMVSVPCSSLSMVVTVRCGHCTSLLSVNMMKASFVP 61
           +TLNHLFDLP QIC+VQCGFCTTIL+VSVP +SLSMVVTVRCGHCTSLLSVN+MKASF+P
Sbjct: 9   TTLNHLFDLPGQICHVQCGFCTTILLVSVPFTSLSMVVTVRCGHCTSLLSVNLMKASFIP 68

Query: 62  FHLLASLTHLQP--KESSA-----EEDANMTFN--SHSGASMMTYSDCEEEDLIPMSNFV 112
            HLLASL+HL    KE  A     EE+A        +S  ++++ SD E+ED+  +   V
Sbjct: 69  LHLLASLSHLDETGKEEVAATDGVEEEAWKVNQEKENSPTTLVSSSDNEDEDVSRVYQVV 128

Query: 113 NKPPEKRQRTPSAYNRFIKEEIKRLKAENPDMAHKEAFSTAAKNWANFPPTQCK--GDEE 170
           NKPPEKRQR PSAYN FIKEEI+RLKA+NP MAHKEAFS AAKNWA+FPP   K    ++
Sbjct: 129 NKPPEKRQRAPSAYNCFIKEEIRRLKAQNPSMAHKEAFSLAAKNWAHFPPAHNKRAASDQ 188

Query: 171 GGSQNDQLADLDSHVDPLDDEVNEEGQGFRGRKVPRNSILERTPFE 216
              + D  A L  +V    +E N    GFR RK  R+SI  ++PFE
Sbjct: 189 CFCEEDNNAILPCNVFEDHEESN---NGFRERKAQRHSIWGKSPFE 231


>AT2G26580.2 | Symbols: YAB5 | plant-specific transcription factor
           YABBY family protein | chr2:11303923-11306739 REVERSE
           LENGTH=164
          Length = 164

 Score =  149 bits (377), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 78/152 (51%), Positives = 101/152 (66%), Gaps = 15/152 (9%)

Query: 12  EQICYVQCGFCTTILMVSVPCSSLSMVVTVRCGHCTSLLSVNMMKASFVPFHLLASLT-- 69
           EQ+CY+ C FC  IL V+VPCSSL  +VTVRCGHCT+L SVNM  A       L SL+  
Sbjct: 9   EQLCYIPCNFCNIILAVNVPCSSLFDIVTVRCGHCTNLWSVNMAAA-------LQSLSRP 61

Query: 70  HLQPKESSAEEDANMTFNSHSGASMMTYSDCEEEDLIPMSNFVNKPPEKRQRTPSAYNRF 129
           + Q    +  E  + + +     S ++     E+ +      VN+PPEKRQR PSAYN+F
Sbjct: 62  NFQATNYAVPEYGSSSRSHTKIPSRISTRTITEQRI------VNRPPEKRQRVPSAYNQF 115

Query: 130 IKEEIKRLKAENPDMAHKEAFSTAAKNWANFP 161
           IKEEI+R+KA NPD++H+EAFSTAAKNWA+FP
Sbjct: 116 IKEEIQRIKANNPDISHREAFSTAAKNWAHFP 147


>AT2G26580.1 | Symbols: YAB5 | plant-specific transcription factor
           YABBY family protein | chr2:11303923-11306739 REVERSE
           LENGTH=164
          Length = 164

 Score =  149 bits (377), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 78/152 (51%), Positives = 101/152 (66%), Gaps = 15/152 (9%)

Query: 12  EQICYVQCGFCTTILMVSVPCSSLSMVVTVRCGHCTSLLSVNMMKASFVPFHLLASLT-- 69
           EQ+CY+ C FC  IL V+VPCSSL  +VTVRCGHCT+L SVNM  A       L SL+  
Sbjct: 9   EQLCYIPCNFCNIILAVNVPCSSLFDIVTVRCGHCTNLWSVNMAAA-------LQSLSRP 61

Query: 70  HLQPKESSAEEDANMTFNSHSGASMMTYSDCEEEDLIPMSNFVNKPPEKRQRTPSAYNRF 129
           + Q    +  E  + + +     S ++     E+ +      VN+PPEKRQR PSAYN+F
Sbjct: 62  NFQATNYAVPEYGSSSRSHTKIPSRISTRTITEQRI------VNRPPEKRQRVPSAYNQF 115

Query: 130 IKEEIKRLKAENPDMAHKEAFSTAAKNWANFP 161
           IKEEI+R+KA NPD++H+EAFSTAAKNWA+FP
Sbjct: 116 IKEEIQRIKANNPDISHREAFSTAAKNWAHFP 147


>AT1G08465.1 | Symbols: YAB2 | Plant-specific transcription factor
           YABBY family protein | chr1:2676033-2679382 FORWARD
           LENGTH=184
          Length = 184

 Score =  147 bits (370), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 83/174 (47%), Positives = 108/174 (62%), Gaps = 17/174 (9%)

Query: 12  EQICYVQCGFCTTILMVSVPCSSLSMVVTVRCGHCTSLLSVN----MMKASFVPFHLLAS 67
           E++CYV C FCTTIL VSVP +SL  +VTVRCGHCT+LLS+N    + + S  P H    
Sbjct: 8   ERVCYVHCSFCTTILAVSVPYASLFTLVTVRCGHCTNLLSLNIGVSLHQTSAPPIH---- 63

Query: 68  LTHLQPKE---SSAEEDANMTFNSHSGASMMTYSDCEEEDLIPMSNFVNKPPEKRQRTPS 124
              LQP     +S     +   +S S  ++    D E   + P+     +PPEKRQR PS
Sbjct: 64  -QDLQPHRQHTTSLVTRKDCASSSRSTNNLSENIDREAPRMPPI-----RPPEKRQRVPS 117

Query: 125 AYNRFIKEEIKRLKAENPDMAHKEAFSTAAKNWANFPPTQCKGDEEGGSQNDQL 178
           AYNRFIKEEI+R+KA NP+++H+EAFSTAAKNWA+FP        +G  +  QL
Sbjct: 118 AYNRFIKEEIQRIKACNPEISHREAFSTAAKNWAHFPHIHFGLKLDGNKKGKQL 171


>AT2G45190.1 | Symbols: AFO, FIL, YAB1 | Plant-specific
           transcription factor YABBY family protein |
           chr2:18628450-18630552 REVERSE LENGTH=229
          Length = 229

 Score =  144 bits (363), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 81/170 (47%), Positives = 104/170 (61%), Gaps = 21/170 (12%)

Query: 8   FDLPEQICYVQCGFCTTILMVSVPCSSLSMVVTVRCGHCTSLLSVNM----MKAS----- 58
           F   + +CYVQC FC TIL V+VP +SL   VTVRCG CT+LLSVNM    + AS     
Sbjct: 19  FSPSDHLCYVQCNFCQTILAVNVPYTSLFKTVTVRCGCCTNLLSVNMRSYVLPASNQLQL 78

Query: 59  -------FVPFHLLASLTHLQPKESSAEEDANMTFNSHSGASMMTYSDCEEEDLIPMSNF 111
                  F P  +L  L       +    + + T N      + ++ D  ++  IP +  
Sbjct: 79  QLGPHSYFNPQDILEELRDAPSNMNMMMMNQHPTMND-----IPSFMDLHQQHEIPKAPP 133

Query: 112 VNKPPEKRQRTPSAYNRFIKEEIKRLKAENPDMAHKEAFSTAAKNWANFP 161
           VN+PPEKRQR PSAYNRFIKEEI+R+KA NPD++H+EAFS AAKNWA+FP
Sbjct: 134 VNRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFP 183


>AT4G00180.1 | Symbols: YAB3 | Plant-specific transcription factor
           YABBY family protein | chr4:72804-75089 REVERSE
           LENGTH=240
          Length = 240

 Score =  132 bits (333), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 80/179 (44%), Positives = 104/179 (58%), Gaps = 27/179 (15%)

Query: 8   FDLPEQICYVQCGFCTTILMVSVPCSSLSMVVTVRCGHCTSLLSVNM-MKASFVPFHLLA 66
           F   +Q+CYV C FC T+L VSVP SSL   VTVRCGHC++LLSV + M+A  +P   ++
Sbjct: 19  FSSTDQLCYVHCSFCDTVLAVSVPPSSLFKTVTVRCGHCSNLLSVTVSMRALLLP--SVS 76

Query: 67  SLTH--------------LQPKESSAEE-DANMTFNSHSGAS-------MMTYSDCEEED 104
           +L H              L+   S  +  + NM  + H+ A        M T +    + 
Sbjct: 77  NLGHSFLPPPPPPPPPNLLEEMRSGGQNINMNMMMSHHASAHHPNEHLVMATRNGRSVDH 136

Query: 105 LIPMSNFVNKPP--EKRQRTPSAYNRFIKEEIKRLKAENPDMAHKEAFSTAAKNWANFP 161
           L  M          EKRQR PSAYNRFIKEEI+R+KA NPD++H+EAFS AAKNWA+FP
Sbjct: 137 LQEMPRPPPANRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFP 195


>AT4G00180.2 | Symbols: YAB3 | Plant-specific transcription factor
           YABBY family protein | chr4:72804-74888 REVERSE
           LENGTH=209
          Length = 209

 Score =  109 bits (272), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/166 (42%), Positives = 92/166 (55%), Gaps = 27/166 (16%)

Query: 21  FCTTILMVSVPCSSLSMVVTVRCGHCTSLLSVNM-MKASFVPFHLLASLTH--------- 70
            C     VSVP SSL   VTVRCGHC++LLSV + M+A  +P   +++L H         
Sbjct: 1   MCDINWQVSVPPSSLFKTVTVRCGHCSNLLSVTVSMRALLLPS--VSNLGHSFLPPPPPP 58

Query: 71  -----LQPKESSAEE-DANMTFNSHSGAS-------MMTYSDCEEEDLIPMSNFVNKPP- 116
                L+   S  +  + NM  + H+ A        M T +    + L  M         
Sbjct: 59  PPPNLLEEMRSGGQNINMNMMMSHHASAHHPNEHLVMATRNGRSVDHLQEMPRPPPANRP 118

Query: 117 -EKRQRTPSAYNRFIKEEIKRLKAENPDMAHKEAFSTAAKNWANFP 161
            EKRQR PSAYNRFIKEEI+R+KA NPD++H+EAFS AAKNWA+FP
Sbjct: 119 PEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFP 164


>AT1G69180.1 | Symbols: CRC | Plant-specific transcription factor
           YABBY family protein | chr1:26007734-26008940 REVERSE
           LENGTH=181
          Length = 181

 Score =  106 bits (264), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 65/165 (39%), Positives = 89/165 (53%), Gaps = 19/165 (11%)

Query: 12  EQICYVQCGFCTTILMVSVPCSSLSMVVTVRCGHCTSLLSVNMMKASFV----PFHLLAS 67
           E + YV+C  C TIL V +P   +   VTV+CGHC +L        SF+    P     S
Sbjct: 19  EHLYYVRCSICNTILAVGIPLKRMLDTVTVKCGHCGNL--------SFLTTTPPLQGHVS 70

Query: 68  LTHLQPKESSAEEDANMTFNSHSGASMMTYSDCEEEDLIPMSNFVNKPPEKRQRTPSAYN 127
           LT LQ +     +           +S  + S   ++   P   FV KPPEK+QR PSAYN
Sbjct: 71  LT-LQMQSFGGSDYKK------GSSSSSSSSTSSDQPPSPSPPFVVKPPEKKQRLPSAYN 123

Query: 128 RFIKEEIKRLKAENPDMAHKEAFSTAAKNWANFPPTQCKGDEEGG 172
           RF+++EI+R+K+ NP++ H+EAFS AAKNWA + P        GG
Sbjct: 124 RFMRDEIQRIKSANPEIPHREAFSAAAKNWAKYIPNSPTSITSGG 168