Miyakogusa Predicted Gene

Lj2g3v1414960.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1414960.1 Non Chatacterized Hit- tr|I3SBY2|I3SBY2_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=3
SV=1,98.59,2e-33,RNA_POL_N_8KD,RNA polymerases, subunit N, zinc
binding site; RNA polymerase subunit RPB10,RNA polyme,CUFF.36986.1
         (71 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G61700.1 | Symbols:  | RNA polymerases N / 8 kDa subunit | ch...   135   4e-33
AT1G11475.1 | Symbols: NRPB10, NRPD10, NRPE10 | RNA polymerases ...   135   5e-33

>AT1G61700.1 | Symbols:  | RNA polymerases N / 8 kDa subunit |
          chr1:22787105-22788112 FORWARD LENGTH=71
          Length = 71

 Score =  135 bits (341), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 62/71 (87%), Positives = 69/71 (97%)

Query: 1  MIIPVRCFTCGKVIGNKWDPYLDLLQSDYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MI+PVRCFTCGKVIGNKWD YL+LLQ+DY+EGDALDALGLVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIVPVRCFTCGKVIGNKWDTYLELLQADYAEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYNTLDKSDTS 71
          NYNT++KSD +
Sbjct: 61 NYNTMEKSDPN 71


>AT1G11475.1 | Symbols: NRPB10, NRPD10, NRPE10 | RNA polymerases N
          / 8 kDa subunit | chr1:3862520-3863805 FORWARD
          LENGTH=71
          Length = 71

 Score =  135 bits (341), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 65/71 (91%), Positives = 67/71 (94%)

Query: 1  MIIPVRCFTCGKVIGNKWDPYLDLLQSDYSEGDALDALGLVRYCCRRMLMTHVDLIEKLL 60
          MIIPVRCFTCGKVIGNKWD YLDLLQ DY+EGDALDAL LVRYCCRRMLMTHVDLIEKLL
Sbjct: 1  MIIPVRCFTCGKVIGNKWDQYLDLLQLDYTEGDALDALQLVRYCCRRMLMTHVDLIEKLL 60

Query: 61 NYNTLDKSDTS 71
          NYNTL+KSD S
Sbjct: 61 NYNTLEKSDNS 71