Miyakogusa Predicted Gene

Lj2g3v1391610.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1391610.1 tr|C1MSP2|C1MSP2_MICPC Predicted protein
OS=Micromonas pusilla (strain CCMP1545)
GN=MICPUCDRAFT_5776,47.42,1e-17,RRM,RNA recognition motif domain;
seg,NULL; no description,Nucleotide-binding, alpha-beta plait;
coi,CUFF.36966.1
         (660 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G60200.1 | Symbols:  | splicing factor PWI domain-containing ...   175   1e-43

>AT1G60200.1 | Symbols:  | splicing factor PWI domain-containing
           protein / RNA recognition motif (RRM)-containing protein
           | chr1:22200882-22205241 REVERSE LENGTH=899
          Length = 899

 Score =  175 bits (443), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 118/322 (36%), Positives = 175/322 (54%), Gaps = 21/322 (6%)

Query: 122 RAYAPMPNGY-----AAPPQGTVXXXXXXXXXXXXXXMLRPVY---PPRPHGALNVAPVS 173
           R + PM NGY      APP G +              M+RP +   PP   GA+ +AP  
Sbjct: 114 RPFQPMANGYPGIHGVAPP-GAMPPHGLLRYPSPYPTMVRPGFIMRPPGTIGAVQLAP-- 170

Query: 174 XXXXXXXXXXXXXXXXXXXXXXXXSVTPAEKQQITVYIRIAPTVENEFVLSLIQLCGNIK 233
                                    VTPAEK Q T+YI    TVEN+F++S+++ CG++K
Sbjct: 171 RPLIPGMPGLRPVMPPMVRPASLPFVTPAEKPQTTIYIGKIATVENDFMMSILEFCGHVK 230

Query: 234 SWKRTQYLSSGTPKSFGFYEFESAEGVLRAMRLLSKLNIDGQELVVNVDEAMKQYLERYV 293
           S  R +  ++  PK FGFYEFESAEG+LRA+RLL++  IDGQEL+VNV++A K+YL +YV
Sbjct: 231 SCLRAEDPTTKKPKGFGFYEFESAEGILRAIRLLTQRTIDGQELLVNVNQATKEYLLKYV 290

Query: 294 QRKTENSIKKEAQTAGDEKDDEGTKPSDATDAAKPDVDPSNKEDNDSGNKESHDVKNFGI 353
           ++K E +  K+A+ +   K+++   P    D  +   D    +D +S  KE+ D+ N  +
Sbjct: 291 EKKIETA--KKAKESQGTKENQAEGPESEQDKLE-SADNETGKDGESKIKENIDIANSAV 347

Query: 354 VTDEDREADRDALVKIANMIEERLMTRXXXXXXXXXTVDGSVSSVQEQPAKTRDGESDVD 413
           +TDE+READR+A+ KI   IEERL +            DG   S  E   K++DG+S+ D
Sbjct: 348 LTDEEREADREAMEKIETAIEERLKSN-PLPPPPPPPADG---SGMEFAFKSKDGDSNTD 403

Query: 414 TKKNETGEDKNDKEANSD-NQP 434
             +++     ND E + + N+P
Sbjct: 404 VARSDAA--ANDVETSGEHNRP 423