Miyakogusa Predicted Gene

Lj2g3v1389570.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1389570.1 tr|A9RN15|A9RN15_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_160063,43.59,2e-17,DUF3685,Uncharacterised protein
family Ycf55,CUFF.36955.1
         (129 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G48830.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   164   2e-41
AT5G48830.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   157   2e-39

>AT5G48830.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast;
           EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
           growth stages; Has 30201 Blast hits to 17322 proteins in
           780 species: Archae - 12; Bacteria - 1396; Metazoa -
           17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
           Eukaryotes - 2996 (source: NCBI BLink). |
           chr5:19800269-19802625 REVERSE LENGTH=511
          Length = 511

 Score =  164 bits (415), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 85/132 (64%), Positives = 103/132 (78%), Gaps = 3/132 (2%)

Query: 1   MDTVVSMYEDRFDLCILDSQPIE-LENSQ-TEKQSWWKRLTQQNSKTM-SPELHCIVISL 57
           ++ VVSMYEDRFDL IL +Q I  L+ S  TE  SWW++ T   +K   S  L   +IS 
Sbjct: 380 LEAVVSMYEDRFDLYILQTQVINNLDGSDDTESLSWWRKFTLGKTKAAPSSPLRYSIISD 439

Query: 58  FSMPIKRTKELRALTGWRYYFSLFLELSDITMPLIRAVVDKASEAISFFLVSLIGRSLGL 117
           FS+P+KRTKEL+AL+GWRYYFSLFLELSDI MP+IR V+DK S  ISFFLV+LIGRS+GL
Sbjct: 440 FSLPVKRTKELKALSGWRYYFSLFLELSDIGMPIIRVVLDKVSSVISFFLVTLIGRSVGL 499

Query: 118 IYTGIRQSLKWK 129
           I+TGIRQSL+WK
Sbjct: 500 IFTGIRQSLRWK 511


>AT5G48830.2 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast;
           EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
           growth stages. | chr5:19800269-19802625 REVERSE
           LENGTH=517
          Length = 517

 Score =  157 bits (396), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 84/132 (63%), Positives = 102/132 (77%), Gaps = 4/132 (3%)

Query: 1   MDTVVSMYEDRFDLCILDSQPIE-LENSQ-TEKQSWWKRLTQQNSKTM-SPELHCIVISL 57
           ++ VVSMYEDRFDL IL +Q I  L+ S  TE  SWW++ T   +K   S  L   +IS 
Sbjct: 387 LEAVVSMYEDRFDLYILQTQVINNLDGSDDTESLSWWRKFTLGKTKAAPSSPLRYSIISD 446

Query: 58  FSMPIKRTKELRALTGWRYYFSLFLELSDITMPLIRAVVDKASEAISFFLVSLIGRSLGL 117
           FS+P+KRTKEL+AL+GW YYFSLFLELSDI MP+IR V+DK S  ISFFLV+LIGRS+GL
Sbjct: 447 FSLPVKRTKELKALSGW-YYFSLFLELSDIGMPIIRVVLDKVSSVISFFLVTLIGRSVGL 505

Query: 118 IYTGIRQSLKWK 129
           I+TGIRQSL+WK
Sbjct: 506 IFTGIRQSLRWK 517