Miyakogusa Predicted Gene
- Lj2g3v1374500.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v1374500.1 tr|F2EKY1|F2EKY1_HORVD Predicted protein
OS=Hordeum vulgare var. distichum PE=2
SV=1,44.34,3e-18,DUF4228,Protein of unknown function DUF4228;
seg,NULL,CUFF.36861.1
(175 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G60010.1 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 153 4e-38
AT1G10530.1 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 140 4e-34
AT5G50090.1 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 107 4e-24
AT5G50090.2 | Symbols: | unknown protein; BEST Arabidopsis thal... 106 7e-24
AT5G62900.1 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 102 2e-22
AT5G67620.1 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 99 1e-21
>AT1G60010.1 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN: N-terminal
protein myristoylation; LOCATED IN: cellular_component
unknown; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G10530.1);
Has 185 Blast hits to 185 proteins in 18 species: Archae
- 0; Bacteria - 0; Metazoa - 0; Fungi - 3; Plants - 180;
Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
| chr1:22095660-22096434 REVERSE LENGTH=173
Length = 173
Score = 153 bits (387), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 85/182 (46%), Positives = 105/182 (57%), Gaps = 16/182 (8%)
Query: 1 MGNCQAVDAAVLVIQHPGGKIERMYWPITASEVMKTNPGHYVSLIIPLP------VTEQE 54
MGNCQAVDAA LV+QHP GKI+R Y P++ SE+M+ PGHYVSLIIPLP T
Sbjct: 1 MGNCQAVDAAALVLQHPDGKIDRYYGPVSVSEIMRMYPGHYVSLIIPLPEKNIPATTTTT 60
Query: 55 QRNQEQKSVRFTGVKLLRPNETLNLGPAYRLIPTQEVMXXXXXXXXXXXXXXXXETIEKP 114
E+K VRFT VKLLRP E L LG AYRLI +QEVM ET ++
Sbjct: 61 DDKSERKVVRFTRVKLLRPTENLVLGHAYRLITSQEVMKVLRAKKYAKTKKHQSETSKEK 120
Query: 115 QTEKKSSGCESQTAGDSVSGNTNTNQGMRAERQRQRGS-ANPAVVRSKSWRPSLQSISEF 173
+ + + ++ NQ + + ++QR N A RSK+WRPSLQSISE
Sbjct: 121 KKPSSEKKIDEE---------SDKNQNLETKDEKQRSVLTNSASSRSKTWRPSLQSISEA 171
Query: 174 TS 175
TS
Sbjct: 172 TS 173
>AT1G10530.1 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN: N-terminal
protein myristoylation; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G60010.1);
Has 143 Blast hits to 143 proteins in 14 species: Archae
- 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 143;
Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
| chr1:3471805-3472526 REVERSE LENGTH=166
Length = 166
Score = 140 bits (353), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 84/183 (45%), Positives = 104/183 (56%), Gaps = 25/183 (13%)
Query: 1 MGNCQAVDAAVLVIQHPGGKIERMYWPITASEVMKTNPGHYVSLIIPL--------PVTE 52
MGNCQAV+AAVLV+QHPGG I+R Y ++ +EVM PGHYVSLIIPL P TE
Sbjct: 1 MGNCQAVNAAVLVLQHPGGIIDRYYSSVSVTEVMAMYPGHYVSLIIPLSEEEEKNIPATE 60
Query: 53 QEQRNQEQKSVRFTGVKLLRPNETLNLGPAYRLIPTQEVMXXXXXXXXXXXXXXXXETIE 112
+ +++K+VRFT V+LLRP E L LG AYRLI +QEVM IE
Sbjct: 61 KGDDKKQRKAVRFTRVQLLRPTENLVLGHAYRLITSQEVM---KVLREKKSAKTKKHQIE 117
Query: 113 KPQTEKKSSGCESQTAGDSVSGNTNTNQGMRAERQRQRGSANPAVVRSKSWRPSLQSISE 172
K T KK S D + R R + ++++SK+WRPSLQSISE
Sbjct: 118 KTTTAKKFS--------DKKVPEKKQGKQFRVIRN------STSLLKSKTWRPSLQSISE 163
Query: 173 FTS 175
TS
Sbjct: 164 ATS 166
>AT5G50090.1 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN: N-terminal
protein myristoylation; LOCATED IN: cellular_component
unknown; BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT5G62900.1); Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria -
0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses -
0; Other Eukaryotes - 339 (source: NCBI BLink). |
chr5:20369961-20370878 FORWARD LENGTH=159
Length = 159
Score = 107 bits (267), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 68/172 (39%), Positives = 88/172 (51%), Gaps = 17/172 (9%)
Query: 1 MGNCQAVDAAVLVIQHPGGKIERMYWPITASEVMKTNPGHYVSLIIPLPVTEQEQRNQEQ 60
MGNCQAVD A +VIQHP GK E++ P++AS VMK NPGH VSL+I
Sbjct: 1 MGNCQAVDTARVVIQHPNGKEEKLSCPVSASYVMKMNPGHCVSLLISTTALSSASSGH-G 59
Query: 61 KSVRFTGVKLLRPNETLNLGPAYRLIPTQEVMXXXXXXXXXXXXXXXXETIEKPQTEKKS 120
+R T +KLLRP +TL LG YRLI T+EVM + +K + K
Sbjct: 60 GPLRLTRIKLLRPTDTLVLGHVYRLITTKEVMKGLMAKKCSKLKKESKGSDDKLEMVK-- 117
Query: 121 SGCESQTAGDSVSGNTNTNQGMRAERQRQRGSANPAVVRSKSWRPSLQSISE 172
+ N + Q + E++R R S+SW+PSLQSISE
Sbjct: 118 ------AINSTKLDNEDQLQMKKQEKERSR--------ISRSWQPSLQSISE 155
>AT5G50090.2 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G62900.1); Has 35333 Blast hits to 34131
proteins in 2444 species: Archae - 798; Bacteria -
22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). |
chr5:20369961-20370878 FORWARD LENGTH=153
Length = 153
Score = 106 bits (265), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 69/172 (40%), Positives = 89/172 (51%), Gaps = 23/172 (13%)
Query: 1 MGNCQAVDAAVLVIQHPGGKIERMYWPITASEVMKTNPGHYVSLIIPLPVTEQEQRNQEQ 60
MGNCQAVD A +VIQHP GK E++ P++AS VMK NPGH VSL+I
Sbjct: 1 MGNCQAVDTARVVIQHPNGKEEKLSCPVSASYVMKMNPGHCVSLLISTTALSSASSGH-G 59
Query: 61 KSVRFTGVKLLRPNETLNLGPAYRLIPTQEVMXXXXXXXXXXXXXXXXETIEKPQTEKKS 120
+R T +KLLRP +TL LG YRLI T+EVM + K + E K
Sbjct: 60 GPLRLTRIKLLRPTDTLVLGHVYRLITTKEVM-----------KGLMAKKCSKLKKESKG 108
Query: 121 SGCESQTAGDSVSGNTNTNQGMRAERQRQRGSANPAVVRSKSWRPSLQSISE 172
S + + +++ N+ ER R S+SW+PSLQSISE
Sbjct: 109 SDDKLEMV-KAINSTKLDNEDQEKERSRI----------SRSWQPSLQSISE 149
>AT5G62900.1 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN: N-terminal
protein myristoylation; LOCATED IN: cellular_component
unknown; EXPRESSED IN: 22 plant structures; EXPRESSED
DURING: 12 growth stages; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G50090.1);
Has 157 Blast hits to 157 proteins in 14 species: Archae
- 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 157;
Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
| chr5:25248872-25249725 FORWARD LENGTH=161
Length = 161
Score = 102 bits (253), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/177 (37%), Positives = 91/177 (51%), Gaps = 18/177 (10%)
Query: 1 MGNCQAVDAAVLVIQHPGGKIERMYWPITASEVMKTNPGHYVSLIIPLPVTEQEQRNQEQ 60
MGNCQA +AA VIQ P GK R Y + ASEV+K++PGH+V+L++ V
Sbjct: 1 MGNCQAAEAATTVIQQPDGKSVRFYCTVNASEVIKSHPGHHVALLLSSAVP-------HG 53
Query: 61 KSVRFTGVKLLRPNETLNLGPAYRLIPTQEVMXXXXXXXXXXXXXXXXETIEKPQTEKKS 120
S+R T +KLLRP++ L LG YRLI ++EVM E + E
Sbjct: 54 GSLRVTRIKLLRPSDNLLLGHVYRLISSEEVMKGIRAKKSGKMKKIHGE-FSVAEEEINP 112
Query: 121 SGCESQTAGDSVSGNTNTNQGMRAERQRQRGSANP--AVVRSKSWRPSLQSISEFTS 175
S++A D R ++QRG N A + ++W+PSLQSISE TS
Sbjct: 113 LTLRSESASD--------KDTQRRIHEKQRGMMNTGGATNKVRAWQPSLQSISESTS 161
>AT5G67620.1 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN: N-terminal
protein myristoylation; LOCATED IN: microtubule; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT5G62900.1); Has 1807 Blast hits to 1807 proteins
in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736;
Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes
- 339 (source: NCBI BLink). | chr5:26964891-26965720
REVERSE LENGTH=182
Length = 182
Score = 99.0 bits (245), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 95/187 (50%), Gaps = 18/187 (9%)
Query: 1 MGNCQAVDAAVLVIQHPG-GKIERMYWPITASEVMKTNPGHYVSLIIPLPVTEQEQRNQE 59
MGNCQA +AA ++I HP K+ER+YW +TAS++MK+NPGHYV++++ P + E
Sbjct: 1 MGNCQAAEAATVLIHHPAENKVERIYWSVTASDIMKSNPGHYVAVVVTSPTMKNE----- 55
Query: 60 QKSVRFTGVKLLRPNETLNLGPAYRLIPTQEVMXXXXXXXXXXXXXXXXE----TIEKPQ 115
K + +KLLRP++TL +G YRL+ +EV+ E + K +
Sbjct: 56 -KGLPLKQLKLLRPDDTLLIGHVYRLVSFEEVLNEFATKKCVKLGKLLKEGGGLDLTKKK 114
Query: 116 TEKKSSGCESQTAGDSVSGNTNTNQGMRAERQRQRGSANPAVVRSK-------SWRPSLQ 168
T+ + + +T + + + N NQ + + RS WRP+L
Sbjct: 115 TKHRKKKLDQETGKVNPNSDPNPNQDGADNAVAGENGGDGFMRRSHGGGRGGGGWRPALH 174
Query: 169 SISEFTS 175
SI EF S
Sbjct: 175 SIPEFGS 181