Miyakogusa Predicted Gene

Lj2g3v1373360.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1373360.2 Non Chatacterized Hit- tr|G7JAI8|G7JAI8_MEDTR
Putative uncharacterized protein OS=Medicago
truncatul,63.27,0.00000000004,no description,Nucleotide-binding,
alpha-beta plait; RRM,RNA recognition motif domain;
coiled-coil,N,CUFF.36859.2
         (446 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G70200.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...   193   2e-49

>AT1G70200.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr1:26432514-26434351 REVERSE LENGTH=538
          Length = 538

 Score =  193 bits (490), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 93/161 (57%), Positives = 122/161 (75%), Gaps = 1/161 (0%)

Query: 123 LPLEQMKQWFDKKPKGFGEGKVYDTSVEDKLLEELRQSREAQAANLEKFKANPVKPASNK 182
           LP+++MK+W +KKP+GFG GK Y+T +EDKLL+E+ QS +AQAANL K K +P+K    K
Sbjct: 112 LPMDKMKKWLEKKPRGFGLGKKYETLIEDKLLDEIEQSWKAQAANLNKLKNDPLKSQQLK 171

Query: 183 NAQNQ-KDAEVVPLGGRVLLANLPKKKNIHRDLKSAMQGVPGIINIAPAVTGNKKTRDPI 241
              N  K      +G RV + NLPKKKN+HRDLK A + V G+++I PAV+GNKKT+DP+
Sbjct: 172 RDDNLLKGTGETQIGFRVRVTNLPKKKNVHRDLKVAFKEVSGVLSITPAVSGNKKTKDPV 231

Query: 242 CKGFAFVDFKDKKDAVRFVELYTGQTLTFGKIQKQIKCEVV 282
           CKGFA VDFK + DA RFV+ +TGQ+L FGK+ KQIKC+VV
Sbjct: 232 CKGFAHVDFKTEIDANRFVKQFTGQSLAFGKVIKQIKCQVV 272