Miyakogusa Predicted Gene

Lj2g3v1373360.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1373360.1 tr|Q6Z867|Q6Z867_ORYSJ RNA recognition motif
(RRM)-containing protein-like OS=Oryza sativa subsp.
ja,42.37,2e-17,RRM_1,RNA recognition motif domain; seg,NULL;
RNA-binding domain, RBD,NULL; no description,Nucleotid,CUFF.36859.1
         (210 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G70200.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...   118   4e-27

>AT1G70200.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr1:26432514-26434351 REVERSE LENGTH=538
          Length = 538

 Score =  118 bits (295), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 55/92 (59%), Positives = 71/92 (77%)

Query: 61  GVIPIGGRVRLANLPKKRNIDRDLKSAMQGVPGIINIVPAVTGNKKTRDPICKGFAFVDF 120
           G   IG RVR+ NLPKK+N+ RDLK A + V G+++I PAV+GNKKT+DP+CKGFA VDF
Sbjct: 181 GETQIGFRVRVTNLPKKKNVHRDLKVAFKEVSGVLSITPAVSGNKKTKDPVCKGFAHVDF 240

Query: 121 KRKKDAVRCVELCAGQTITFGKIQKQIKCEVV 152
           K + DA R V+   GQ++ FGK+ KQIKC+VV
Sbjct: 241 KTEIDANRFVKQFTGQSLAFGKVIKQIKCQVV 272