Miyakogusa Predicted Gene
- Lj2g3v1368240.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v1368240.2 Non Chatacterized Hit- tr|C4JA88|C4JA88_MAIZE
Uncharacterized protein OS=Zea mays PE=2 SV=1,69.49,1e-17,Sterile
alpha motif.,Sterile alpha motif domain; SAM_1,Sterile alpha motif,
type 1; SUBFAMILY NOT NA,CUFF.36853.2
(338 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G70180.1 | Symbols: | Sterile alpha motif (SAM) domain-conta... 120 2e-27
AT1G70180.2 | Symbols: | Sterile alpha motif (SAM) domain-conta... 119 3e-27
AT5G48680.1 | Symbols: | Sterile alpha motif (SAM) domain-conta... 80 2e-15
AT3G07170.1 | Symbols: | Sterile alpha motif (SAM) domain-conta... 74 2e-13
>AT1G70180.1 | Symbols: | Sterile alpha motif (SAM)
domain-containing protein | chr1:26426768-26428985
FORWARD LENGTH=456
Length = 456
Score = 120 bits (300), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 91/197 (46%), Positives = 124/197 (62%), Gaps = 12/197 (6%)
Query: 1 MSDTSR-GRVTITLGRSGQVVKRXXXXXXXXXXXXXXXXXXKRSVRDRIGSNADSSMWHG 59
MS+ SR RVTITLGRSGQVV R KRSV++R+G+ DSS++ G
Sbjct: 1 MSEGSRRSRVTITLGRSGQVVNRAASDIDDGYELPRVGT--KRSVKERLGNPLDSSVYGG 58
Query: 60 NGLASNKRQRGDMSSRNGLDDGRIGKDDLRLKLIQKSASRQAESNDKKRHGDLREKLSKA 119
+ S KRQRG+ S +D +I ++DLR KL+QK+A R+A+S D+ DLREKLS++
Sbjct: 59 EEVVS-KRQRGEASFSG--NDLQISRNDLRFKLMQKNAQRRAQS-DEGCTMDLREKLSRS 114
Query: 120 VQPPRDSFNSKPRMPEPRERSLLRQLPPARSSDDLMRMESMRSSYSPWTLDHIRQRSPDG 179
QPPR S +++PRM EPR+R L +R++ +M S SS+ W L+ +R+RSP+
Sbjct: 115 EQPPR-SLDTRPRMAEPRDRPLSS----SRTARGSSQMISSSSSHPAWALEDLRRRSPER 169
Query: 180 FPSTSRGISPQRNAGDL 196
F TSRG SP RNAG
Sbjct: 170 FVDTSRGRSPPRNAGSF 186
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/178 (35%), Positives = 85/178 (47%), Gaps = 20/178 (11%)
Query: 143 RQLPPARSSDDLMRMESMRSSYSPWTLDHIRQRSPDGFPSTSRGISPQRNAGDLQRRPLN 202
R L PAR+ M S +SP R+P + +SRG P+ N D R +
Sbjct: 287 RALSPARNMGSYM---SSSQGFSP-------PRNPRSYMGSSRGSPPRSNIEDFHGR--S 334
Query: 203 RTYDSARSVPYVGRDVLETSRPPSTAPASFTSRSTMSTWPPVTAKSVASHPGQLPPSSSV 262
R D+ R+ PY R VL P S AP + P P S+
Sbjct: 335 RMLDNMRASPYPVRGVLNGQAPSSGAPFARPMLPPPVPNPHPLPPLSQLPP-----LGSI 389
Query: 263 APRASYAGDEHQSQQTVDGLLHALGLGKYVILFKAEEVDMTALKQMGENDLKELGIPM 320
+ ++ DE S VDG L+++GLGKY + FK EEVDMT +KQM E+DLK+L IPM
Sbjct: 390 MQNSPFSVDEPLS---VDGFLNSIGLGKYSLAFKREEVDMTTIKQMKESDLKDLIIPM 444
>AT1G70180.2 | Symbols: | Sterile alpha motif (SAM)
domain-containing protein | chr1:26426768-26429097
FORWARD LENGTH=460
Length = 460
Score = 119 bits (298), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 91/197 (46%), Positives = 124/197 (62%), Gaps = 12/197 (6%)
Query: 1 MSDTSR-GRVTITLGRSGQVVKRXXXXXXXXXXXXXXXXXXKRSVRDRIGSNADSSMWHG 59
MS+ SR RVTITLGRSGQVV R KRSV++R+G+ DSS++ G
Sbjct: 1 MSEGSRRSRVTITLGRSGQVVNRAASDIDDGYELPRVGT--KRSVKERLGNPLDSSVYGG 58
Query: 60 NGLASNKRQRGDMSSRNGLDDGRIGKDDLRLKLIQKSASRQAESNDKKRHGDLREKLSKA 119
+ S KRQRG+ S +D +I ++DLR KL+QK+A R+A+S D+ DLREKLS++
Sbjct: 59 EEVVS-KRQRGEASFSG--NDLQISRNDLRFKLMQKNAQRRAQS-DEGCTMDLREKLSRS 114
Query: 120 VQPPRDSFNSKPRMPEPRERSLLRQLPPARSSDDLMRMESMRSSYSPWTLDHIRQRSPDG 179
QPPR S +++PRM EPR+R L +R++ +M S SS+ W L+ +R+RSP+
Sbjct: 115 EQPPR-SLDTRPRMAEPRDRPLSS----SRTARGSSQMISSSSSHPAWALEDLRRRSPER 169
Query: 180 FPSTSRGISPQRNAGDL 196
F TSRG SP RNAG
Sbjct: 170 FVDTSRGRSPPRNAGSF 186
Score = 92.4 bits (228), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 72/188 (38%), Positives = 94/188 (50%), Gaps = 20/188 (10%)
Query: 143 RQLPPARSSDDLMRMESMRSSYSPWTLDHIRQRSPDGFPSTSRGISPQRNAGDLQRRPLN 202
R L PAR+ M S +SP R+P + +SRG P+ N D R +
Sbjct: 287 RALSPARNMGSYM---SSSQGFSP-------PRNPRSYMGSSRGSPPRSNIEDFHGR--S 334
Query: 203 RTYDSARSVPYVGRDVLETSRPPSTAPASFTSRSTMSTWPPVTAKSVASHPGQLPPSSSV 262
R D+ R+ PY R VL P S AP + P P S+
Sbjct: 335 RMLDNMRASPYPVRGVLNGQAPSSGAPFARPMLPPPVPNPHPLPPLSQLPP-----LGSI 389
Query: 263 APRASYAGDEHQSQQTVDGLLHALGLGKYVILFKAEEVDMTALKQMGENDLKELGIPMGP 322
+ ++ DE S VDG L+++GLGKY + FK EEVDMT +KQM E+DLK+L IPMGP
Sbjct: 390 MQNSPFSVDEPLS---VDGFLNSIGLGKYSLAFKREEVDMTTIKQMKESDLKDLIIPMGP 446
Query: 323 RKKILLAL 330
RKKIL A+
Sbjct: 447 RKKILQAI 454
>AT5G48680.1 | Symbols: | Sterile alpha motif (SAM)
domain-containing protein | chr5:19744725-19746053
REVERSE LENGTH=206
Length = 206
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 48/73 (65%)
Query: 258 PSSSVAPRASYAGDEHQSQQTVDGLLHALGLGKYVILFKAEEVDMTALKQMGENDLKELG 317
P + AP + D Q+ +VD L +LGL KY F+ EEVDM AL+ M ++DLK L
Sbjct: 129 PETRAAPNRATKKDPQQNDASVDSFLESLGLEKYSTAFQVEEVDMDALRHMTDDDLKALL 188
Query: 318 IPMGPRKKILLAL 330
IPMGPRKKILLAL
Sbjct: 189 IPMGPRKKILLAL 201
>AT3G07170.1 | Symbols: | Sterile alpha motif (SAM)
domain-containing protein | chr3:2280428-2282097 FORWARD
LENGTH=203
Length = 203
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 41/84 (48%), Positives = 50/84 (59%), Gaps = 5/84 (5%)
Query: 247 KSVASHPGQLPPSSSVAPRASYAGDEHQSQQTVDGLLHALGLGKYVILFKAEEVDMTALK 306
KSVA+ SS + S Q+ +VD L +LGL KY F+ EEVDM AL
Sbjct: 121 KSVATETETRKTSSQATRKKS-----QQADSSVDSFLESLGLEKYSTAFQVEEVDMDALM 175
Query: 307 QMGENDLKELGIPMGPRKKILLAL 330
M ++DLK + IPMGPRKKILLAL
Sbjct: 176 HMTDDDLKAMLIPMGPRKKILLAL 199