Miyakogusa Predicted Gene
- Lj2g3v1351570.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v1351570.1 Non Chatacterized Hit- tr|I1J5H6|I1J5H6_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.26893
PE,72.98,0,coiled-coil,NULL; HLH,Helix-loop-helix domain; no
description,Helix-loop-helix domain; seg,NULL; BAS,CUFF.36823.1
(245 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G59640.1 | Symbols: ZCW32, BPE, BPEub | BIG PETAL P | chr1:21... 229 9e-61
AT1G59640.2 | Symbols: ZCW32, BPE, BPEp | BIG PETAL P | chr1:219... 221 4e-58
AT5G62610.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 175 2e-44
AT5G48560.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 160 6e-40
AT3G07340.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 159 2e-39
AT3G23690.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 159 2e-39
AT1G68920.3 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 154 6e-38
AT1G68920.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 154 6e-38
AT1G68920.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 154 6e-38
AT2G18300.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 154 7e-38
AT2G18300.3 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 154 8e-38
AT2G18300.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 152 2e-37
AT4G34530.1 | Symbols: CIB1 | cryptochrome-interacting basic-hel... 146 1e-35
AT1G10120.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 146 1e-35
AT1G26260.3 | Symbols: CIB5 | cryptochrome-interacting basic-hel... 144 5e-35
AT1G26260.2 | Symbols: CIB5 | cryptochrome-interacting basic-hel... 144 5e-35
AT1G26260.1 | Symbols: CIB5 | cryptochrome-interacting basic-hel... 144 5e-35
AT5G50915.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 144 6e-35
AT5G50915.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 144 6e-35
AT4G36540.1 | Symbols: BEE2 | BR enhanced expression 2 | chr4:17... 142 1e-34
AT4G36540.2 | Symbols: BEE2 | BR enhanced expression 2 | chr4:17... 140 7e-34
AT3G57800.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 135 3e-32
AT2G42300.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 134 7e-32
AT1G18400.1 | Symbols: BEE1 | BR enhanced expression 1 | chr1:63... 123 1e-28
AT1G73830.1 | Symbols: BEE3 | BR enhanced expression 3 | chr1:27... 122 2e-28
AT1G73830.2 | Symbols: BEE3 | BR enhanced expression 3 | chr1:27... 122 2e-28
AT1G25330.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 120 1e-27
AT3G57800.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 112 2e-25
AT2G24260.1 | Symbols: LRL1 | LJRHL1-like 1 | chr2:10319646-1032... 92 4e-19
AT4G30980.1 | Symbols: LRL2 | LJRHL1-like 2 | chr4:15079489-1508... 91 5e-19
AT5G58010.1 | Symbols: LRL3 | LJRHL1-like 3 | chr5:23483670-2348... 89 3e-18
AT2G42300.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 84 6e-17
AT1G09530.2 | Symbols: PIF3, POC1, PAP3 | phytochrome interactin... 76 2e-14
AT1G09530.1 | Symbols: PIF3, POC1, PAP3 | phytochrome interactin... 76 2e-14
AT2G20180.1 | Symbols: PIL5, PIF1 | phytochrome interacting fact... 73 1e-13
AT2G20180.3 | Symbols: PIL5 | phytochrome interacting factor 3-l... 73 1e-13
AT2G20180.2 | Symbols: PIL5 | phytochrome interacting factor 3-l... 73 1e-13
AT4G02590.2 | Symbols: UNE12 | basic helix-loop-helix (bHLH) DNA... 71 7e-13
AT4G02590.1 | Symbols: UNE12 | basic helix-loop-helix (bHLH) DNA... 71 7e-13
AT4G02590.3 | Symbols: UNE12 | basic helix-loop-helix (bHLH) DNA... 71 7e-13
AT1G03040.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 71 8e-13
AT1G03040.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 70 1e-12
AT1G51140.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 68 6e-12
AT2G42280.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 67 7e-12
AT4G28800.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 67 1e-11
AT4G09180.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 66 2e-11
AT4G28815.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 66 3e-11
AT2G46970.1 | Symbols: PIL1 | phytochrome interacting factor 3-l... 65 4e-11
AT4G33880.1 | Symbols: RSL2 | ROOT HAIR DEFECTIVE 6-LIKE 2 | chr... 65 4e-11
AT4G28790.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 64 6e-11
AT1G35460.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 64 1e-10
AT2G14760.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 63 2e-10
AT4G00050.1 | Symbols: UNE10 | basic helix-loop-helix (bHLH) DNA... 63 2e-10
AT1G27740.1 | Symbols: RSL4 | root hair defective 6-like 4 | chr... 62 2e-10
AT4G36930.1 | Symbols: SPT | basic helix-loop-helix (bHLH) DNA-b... 61 5e-10
AT3G59060.1 | Symbols: PIL6, PIF5 | phytochrome interacting fact... 61 7e-10
AT3G59060.4 | Symbols: PIL6, PIF5 | phytochrome interacting fact... 61 7e-10
AT3G59060.3 | Symbols: PIL6, PIF5 | phytochrome interacting fact... 61 7e-10
AT3G59060.2 | Symbols: PIL6, PIF5 | phytochrome interacting fact... 61 7e-10
AT2G43140.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 61 8e-10
AT2G43010.1 | Symbols: PIF4, SRL2, AtPIF4 | phytochrome interact... 60 1e-09
AT2G43010.2 | Symbols: PIF4, SRL2, AtPIF4 | phytochrome interact... 60 1e-09
AT4G28790.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 60 2e-09
AT2G43140.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 59 2e-09
AT1G05805.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 59 2e-09
AT5G67110.1 | Symbols: ALC | basic helix-loop-helix (bHLH) DNA-b... 59 4e-09
AT5G43175.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 56 3e-08
AT3G21330.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 56 3e-08
AT1G66470.1 | Symbols: RHD6 | ROOT HAIR DEFECTIVE6 | chr1:247953... 54 7e-08
AT5G01310.1 | Symbols: APTX | APRATAXIN-like | chr5:125304-12896... 54 7e-08
AT2G14760.3 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 53 1e-07
AT5G37800.1 | Symbols: RSL1, ATRSL1 | RHD SIX-LIKE 1 | chr5:1503... 53 2e-07
AT5G61270.1 | Symbols: PIF7 | phytochrome-interacting factor7 | ... 52 2e-07
AT5G61270.2 | Symbols: PIF7 | phytochrome-interacting factor7 | ... 52 3e-07
AT5G41315.1 | Symbols: GL3, MYC6.2 | basic helix-loop-helix (bHL... 52 4e-07
AT1G63650.3 | Symbols: EGL3 | basic helix-loop-helix (bHLH) DNA-... 52 4e-07
AT1G63650.2 | Symbols: EGL3, EGL1, ATMYC-2 | basic helix-loop-he... 52 4e-07
AT1G63650.1 | Symbols: EGL3, EGL1, ATMYC-2 | basic helix-loop-he... 52 4e-07
AT1G69010.1 | Symbols: BIM2 | BES1-interacting Myc-like protein ... 49 3e-06
AT4G28811.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 49 4e-06
AT3G62090.1 | Symbols: PIL2, PIF6 | phytochrome interacting fact... 49 4e-06
AT3G62090.2 | Symbols: PIL2, PIF6 | phytochrome interacting fact... 48 5e-06
AT4G00120.1 | Symbols: IND1, GT140, IND, EDA33 | basic helix-loo... 48 8e-06
>AT1G59640.1 | Symbols: ZCW32, BPE, BPEub | BIG PETAL P |
chr1:21909464-21911030 REVERSE LENGTH=264
Length = 264
Score = 229 bits (585), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 143/251 (56%), Positives = 156/251 (62%), Gaps = 29/251 (11%)
Query: 1 MDPAAMMNGGANTASYHLAEIWQFPHPVAGDSGGGLGLRRPQFG---HGFGDFTTCPTRE 57
MDP+ MMN G ++LAEIWQFP + G S G RR G G D TT
Sbjct: 1 MDPSGMMNEGG---PFNLAEIWQFP--LNGVSTAGDSSRRSFVGPNQFGDADLTTAAN-- 53
Query: 58 DPGSDPVSSDH--RQALT--VSLGRKRRDSEEESVKGVSTSXXXXXXXXXXXXXKRMKIS 113
DP H QA+ +S KRR+ E +S K VST KR KI
Sbjct: 54 ---GDPARMSHALSQAVIEGISGAWKRREDESKSAKIVST------IGASEGENKRQKI- 103
Query: 114 GNRNESSKGGEAEVSSGKPAEQTSKAPPEPPKQDYIHVRARRGQATDSHSLAERARREKI 173
+E G S G EQ K P +DYIHVRARRGQATDSHSLAERARREKI
Sbjct: 104 ---DEVCDGKAEAESLGTETEQ--KKQQMEPTKDYIHVRARRGQATDSHSLAERARREKI 158
Query: 174 SERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRLTPGIEVFP 233
SERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSR+ PGIEVFP
Sbjct: 159 SERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNPGIEVFP 218
Query: 234 PKDFDQQTFDT 244
PK+F QQ F+
Sbjct: 219 PKEFGQQAFEN 229
>AT1G59640.2 | Symbols: ZCW32, BPE, BPEp | BIG PETAL P |
chr1:21909635-21911030 REVERSE LENGTH=343
Length = 343
Score = 221 bits (563), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 139/243 (57%), Positives = 151/243 (62%), Gaps = 29/243 (11%)
Query: 1 MDPAAMMNGGANTASYHLAEIWQFPHPVAGDSGGGLGLRRPQFG---HGFGDFTTCPTRE 57
MDP+ MMN G ++LAEIWQFP + G S G RR G G D TT
Sbjct: 1 MDPSGMMNEGG---PFNLAEIWQFP--LNGVSTAGDSSRRSFVGPNQFGDADLTT----- 50
Query: 58 DPGSDPVSSDH--RQALT--VSLGRKRRDSEEESVKGVSTSXXXXXXXXXXXXXKRMKIS 113
DP H QA+ +S KRR+ E +S K VST KR KI
Sbjct: 51 AANGDPARMSHALSQAVIEGISGAWKRREDESKSAKIVST------IGASEGENKRQKI- 103
Query: 114 GNRNESSKGGEAEVSSGKPAEQTSKAPPEPPKQDYIHVRARRGQATDSHSLAERARREKI 173
+E G S G EQ K P +DYIHVRARRGQATDSHSLAERARREKI
Sbjct: 104 ---DEVCDGKAEAESLGTETEQ--KKQQMEPTKDYIHVRARRGQATDSHSLAERARREKI 158
Query: 174 SERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRLTPGIEVFP 233
SERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSR+ PGIEVFP
Sbjct: 159 SERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNPGIEVFP 218
Query: 234 PKD 236
PK+
Sbjct: 219 PKE 221
>AT5G62610.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr5:25133117-25134600 REVERSE
LENGTH=281
Length = 281
Score = 175 bits (444), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 120/251 (47%), Positives = 138/251 (54%), Gaps = 24/251 (9%)
Query: 1 MDPAAMMNG---GANTASYHLAEIWQFPHPVAGDSGGGLGLRRPQFGHGFGDFTTCPTRE 57
MDP + + AN +SY L+EIW FP A SG L + + FT E
Sbjct: 1 MDPPLVNDSSFSAANPSSYTLSEIWPFPVNDAVRSGLRLAVNSGRV------FTRS---E 51
Query: 58 DPGSDPVSSDHRQA---LTVSLG-RKRRDSEEESVKGVSTSXXXXXXXXXXXXXKRMKIS 113
G+ VS+ LT G RK RD E S K+ K+
Sbjct: 52 HSGNKDVSAAEESTVTDLTAGWGSRKTRDLNSEDDSSKMVSSSSSGNELKESGDKKRKLC 111
Query: 114 GNRNESSKG-----GEAEVSSGKPAEQTSKAPPEPPKQDYIHVRARRGQATDSHSLAERA 168
G+ + + G GE G K PEPPK DYIHVRARRGQATD HSLAERA
Sbjct: 112 GSESGNGDGSMRPEGETSSGGGGSKATEQKNKPEPPK-DYIHVRARRGQATDRHSLAERA 170
Query: 169 RREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRLT-- 226
RREKISE+M LQD++PGCNK+IGKALVLDEIINYIQSLQRQVEFLSMKLE VNS +
Sbjct: 171 RREKISEKMTALQDIIPGCNKIIGKALVLDEIINYIQSLQRQVEFLSMKLEVVNSGASTG 230
Query: 227 PGIEVFPPKDF 237
P I VFP D
Sbjct: 231 PTIGVFPSGDL 241
>AT5G48560.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr5:19684160-19686871 FORWARD
LENGTH=498
Length = 498
Score = 160 bits (406), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 78/98 (79%), Positives = 85/98 (86%), Gaps = 2/98 (2%)
Query: 140 PPEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDE 199
PPEPPK DYIHVRARRGQATDSHSLAER RREKI ERMK+LQDLVPGCNKV GKAL+LDE
Sbjct: 291 PPEPPK-DYIHVRARRGQATDSHSLAERVRREKIGERMKLLQDLVPGCNKVTGKALMLDE 349
Query: 200 IINYIQSLQRQVEFLSMKLEAVN-SRLTPGIEVFPPKD 236
IINY+QSLQRQVEFLSMKL +VN +RL ++ KD
Sbjct: 350 IINYVQSLQRQVEFLSMKLSSVNDTRLDFNVDALVSKD 387
>AT3G07340.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr3:2341188-2343288 REVERSE
LENGTH=456
Length = 456
Score = 159 bits (402), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 74/94 (78%), Positives = 82/94 (87%)
Query: 144 PKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINY 203
P +DYIHVRARRGQATDSHSLAER RREKISERMK+LQDLVPGCNKV GKAL+LDEIINY
Sbjct: 251 PYKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINY 310
Query: 204 IQSLQRQVEFLSMKLEAVNSRLTPGIEVFPPKDF 237
+QSLQRQVEFLSMKL +VN+RL ++ KD
Sbjct: 311 VQSLQRQVEFLSMKLSSVNTRLDFNMDALLSKDI 344
>AT3G23690.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr3:8528933-8530655 REVERSE
LENGTH=371
Length = 371
Score = 159 bits (401), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 102/219 (46%), Positives = 122/219 (55%), Gaps = 36/219 (16%)
Query: 27 PVAGDSGGGLGLRRPQFGHGFG---DFTTCPTREDPGS----DPVSSDHRQALTVSLGRK 79
P++G G+R P + FG +F + PT ++ DP S R T S RK
Sbjct: 63 PISG------GIRFPPYPGQFGSDREFGSQPTTQESNKSSLLDPDSVSDRVHTTKSNSRK 116
Query: 80 RRDSEEESVKGVSTSXXXXXXXXXXXXXKRMKISGNRNESSKGGE-------------AE 126
R K + + K+SG N SKGG+ E
Sbjct: 117 R--------KSIPSGNGKESPASSSLTASNSKVSG-ENGGSKGGKRSKQDVAGSSKNGVE 167
Query: 127 VSSGKPAEQTSKAPPEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPG 186
K + PPE PK DYIHVRARRGQATDSHSLAERARREKISERM +LQDLVPG
Sbjct: 168 KCDSKGDNKDDAKPPEAPK-DYIHVRARRGQATDSHSLAERARREKISERMTLLQDLVPG 226
Query: 187 CNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRL 225
CN++ GKA++LDEIINY+QSLQRQVEFLSMKL VN R+
Sbjct: 227 CNRITGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRM 265
>AT1G68920.3 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:25915620-25917675 FORWARD
LENGTH=485
Length = 485
Score = 154 bits (389), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 74/104 (71%), Positives = 83/104 (79%)
Query: 133 AEQTSKAPPEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIG 192
+Q K +PPK YIHVRARRGQAT+SHSLAER RREKISERMK LQDLVPGCNKV G
Sbjct: 284 GKQQGKQSSDPPKDGYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCNKVTG 343
Query: 193 KALVLDEIINYIQSLQRQVEFLSMKLEAVNSRLTPGIEVFPPKD 236
KA++LDEIINY+QSLQRQVEFLSMKL VN ++ +E KD
Sbjct: 344 KAVMLDEIINYVQSLQRQVEFLSMKLATVNPQMDFNLEGLLAKD 387
>AT1G68920.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:25915620-25917675 FORWARD
LENGTH=486
Length = 486
Score = 154 bits (388), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 74/104 (71%), Positives = 83/104 (79%)
Query: 133 AEQTSKAPPEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIG 192
+Q K +PPK YIHVRARRGQAT+SHSLAER RREKISERMK LQDLVPGCNKV G
Sbjct: 285 GKQQGKQSSDPPKDGYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCNKVTG 344
Query: 193 KALVLDEIINYIQSLQRQVEFLSMKLEAVNSRLTPGIEVFPPKD 236
KA++LDEIINY+QSLQRQVEFLSMKL VN ++ +E KD
Sbjct: 345 KAVMLDEIINYVQSLQRQVEFLSMKLATVNPQMDFNLEGLLAKD 388
>AT1G68920.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:25915620-25917675 FORWARD
LENGTH=486
Length = 486
Score = 154 bits (388), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 74/104 (71%), Positives = 83/104 (79%)
Query: 133 AEQTSKAPPEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIG 192
+Q K +PPK YIHVRARRGQAT+SHSLAER RREKISERMK LQDLVPGCNKV G
Sbjct: 285 GKQQGKQSSDPPKDGYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCNKVTG 344
Query: 193 KALVLDEIINYIQSLQRQVEFLSMKLEAVNSRLTPGIEVFPPKD 236
KA++LDEIINY+QSLQRQVEFLSMKL VN ++ +E KD
Sbjct: 345 KAVMLDEIINYVQSLQRQVEFLSMKLATVNPQMDFNLEGLLAKD 388
>AT2G18300.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:7953022-7954446 REVERSE
LENGTH=337
Length = 337
Score = 154 bits (388), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 82/134 (61%), Positives = 92/134 (68%), Gaps = 5/134 (3%)
Query: 108 KRMKISGNRNESSKG----GEAEVSSGKPAEQTSKAPPEPPKQDYIHVRARRGQATDSHS 163
K++K+ S KG G E SS E TSK E K DYIHVRARRGQATD HS
Sbjct: 139 KKIKVEAETESSMKGKSNMGNTEASSDTSKE-TSKGASENQKLDYIHVRARRGQATDRHS 197
Query: 164 LAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNS 223
LAERARREKIS++MK LQD+VPGCNKV GKA +LDEIINY+Q LQRQVEFLSMKL +N
Sbjct: 198 LAERARREKISKKMKYLQDIVPGCNKVTGKAGMLDEIINYVQCLQRQVEFLSMKLAVLNP 257
Query: 224 RLTPGIEVFPPKDF 237
L +E K F
Sbjct: 258 ELELAVEDVSVKQF 271
>AT2G18300.3 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:7952546-7954446 REVERSE
LENGTH=364
Length = 364
Score = 154 bits (388), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 82/134 (61%), Positives = 92/134 (68%), Gaps = 5/134 (3%)
Query: 108 KRMKISGNRNESSKG----GEAEVSSGKPAEQTSKAPPEPPKQDYIHVRARRGQATDSHS 163
K++K+ S KG G E SS E TSK E K DYIHVRARRGQATD HS
Sbjct: 139 KKIKVEAETESSMKGKSNMGNTEASSDTSKE-TSKGASENQKLDYIHVRARRGQATDRHS 197
Query: 164 LAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNS 223
LAERARREKIS++MK LQD+VPGCNKV GKA +LDEIINY+Q LQRQVEFLSMKL +N
Sbjct: 198 LAERARREKISKKMKYLQDIVPGCNKVTGKAGMLDEIINYVQCLQRQVEFLSMKLAVLNP 257
Query: 224 RLTPGIEVFPPKDF 237
L +E K F
Sbjct: 258 ELELAVEDVSVKQF 271
>AT2G18300.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:7953022-7954446 REVERSE
LENGTH=335
Length = 335
Score = 152 bits (383), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 80/127 (62%), Positives = 90/127 (70%), Gaps = 5/127 (3%)
Query: 108 KRMKISGNRNESSKG----GEAEVSSGKPAEQTSKAPPEPPKQDYIHVRARRGQATDSHS 163
K++K+ S KG G E SS E TSK E K DYIHVRARRGQATD HS
Sbjct: 139 KKIKVEAETESSMKGKSNMGNTEASSDTSKE-TSKGASENQKLDYIHVRARRGQATDRHS 197
Query: 164 LAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNS 223
LAERARREKIS++MK LQD+VPGCNKV GKA +LDEIINY+Q LQRQVEFLSMKL +N
Sbjct: 198 LAERARREKISKKMKYLQDIVPGCNKVTGKAGMLDEIINYVQCLQRQVEFLSMKLAVLNP 257
Query: 224 RLTPGIE 230
L +E
Sbjct: 258 ELELAVE 264
>AT4G34530.1 | Symbols: CIB1 | cryptochrome-interacting
basic-helix-loop-helix 1 | chr4:16498466-16499946
FORWARD LENGTH=335
Length = 335
Score = 146 bits (369), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 69/92 (75%), Positives = 77/92 (83%)
Query: 133 AEQTSKAPPEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIG 192
+ +SK E K DYIHVRARRGQATDSHS+AER RREKISERMK LQDLVPGC+K+ G
Sbjct: 154 SNDSSKVTKELEKTDYIHVRARRGQATDSHSIAERVRREKISERMKFLQDLVPGCDKITG 213
Query: 193 KALVLDEIINYIQSLQRQVEFLSMKLEAVNSR 224
KA +LDEIINY+QSLQRQ+EFLSMKL VN R
Sbjct: 214 KAGMLDEIINYVQSLQRQIEFLSMKLAIVNPR 245
>AT1G10120.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:3304228-3305984 REVERSE
LENGTH=366
Length = 366
Score = 146 bits (368), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 68/98 (69%), Positives = 82/98 (83%)
Query: 142 EPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEII 201
E PK++YIH+RARRGQAT+SHSLAER RREKISERM++LQ+LVPGCNK+ GKA++LDEII
Sbjct: 197 EAPKENYIHMRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEII 256
Query: 202 NYIQSLQRQVEFLSMKLEAVNSRLTPGIEVFPPKDFDQ 239
NY+QSLQ+QVEFLSMKL VN + I+ KD Q
Sbjct: 257 NYVQSLQQQVEFLSMKLATVNPEINIDIDRILAKDLLQ 294
>AT1G26260.3 | Symbols: CIB5 | cryptochrome-interacting
basic-helix-loop-helix 5 | chr1:9087214-9089035 FORWARD
LENGTH=339
Length = 339
Score = 144 bits (363), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 70/101 (69%), Positives = 80/101 (79%)
Query: 136 TSKAPPEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKAL 195
+ K P + K YIH+RARRGQAT+SHSLAER RREKISERMK LQDLVPGC+KV GKA+
Sbjct: 157 SEKQPSDSLKDGYIHMRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCDKVTGKAV 216
Query: 196 VLDEIINYIQSLQRQVEFLSMKLEAVNSRLTPGIEVFPPKD 236
+LDEIINY+QSLQ Q+EFLSMKL AVN L +E KD
Sbjct: 217 MLDEIINYVQSLQCQIEFLSMKLSAVNPVLDFNLESLLAKD 257
>AT1G26260.2 | Symbols: CIB5 | cryptochrome-interacting
basic-helix-loop-helix 5 | chr1:9087214-9089035 FORWARD
LENGTH=390
Length = 390
Score = 144 bits (363), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 70/101 (69%), Positives = 80/101 (79%)
Query: 136 TSKAPPEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKAL 195
+ K P + K YIH+RARRGQAT+SHSLAER RREKISERMK LQDLVPGC+KV GKA+
Sbjct: 208 SEKQPSDSLKDGYIHMRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCDKVTGKAV 267
Query: 196 VLDEIINYIQSLQRQVEFLSMKLEAVNSRLTPGIEVFPPKD 236
+LDEIINY+QSLQ Q+EFLSMKL AVN L +E KD
Sbjct: 268 MLDEIINYVQSLQCQIEFLSMKLSAVNPVLDFNLESLLAKD 308
>AT1G26260.1 | Symbols: CIB5 | cryptochrome-interacting
basic-helix-loop-helix 5 | chr1:9087214-9089035 FORWARD
LENGTH=390
Length = 390
Score = 144 bits (363), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 70/101 (69%), Positives = 80/101 (79%)
Query: 136 TSKAPPEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKAL 195
+ K P + K YIH+RARRGQAT+SHSLAER RREKISERMK LQDLVPGC+KV GKA+
Sbjct: 208 SEKQPSDSLKDGYIHMRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCDKVTGKAV 267
Query: 196 VLDEIINYIQSLQRQVEFLSMKLEAVNSRLTPGIEVFPPKD 236
+LDEIINY+QSLQ Q+EFLSMKL AVN L +E KD
Sbjct: 268 MLDEIINYVQSLQCQIEFLSMKLSAVNPVLDFNLESLLAKD 308
>AT5G50915.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr5:20710764-20712252 REVERSE
LENGTH=286
Length = 286
Score = 144 bits (363), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 70/107 (65%), Positives = 84/107 (78%), Gaps = 5/107 (4%)
Query: 115 NRNESSKGGEAEVSSGKPAEQTSKAPPEPPKQDYIHVRARRGQATDSHSLAERARREKIS 174
N N S +G E G+ +++ + E P DYIHVRARRGQATDSHSLAER RREKIS
Sbjct: 105 NSNNSKEGVE-----GRKSKKQKRGSKEEPPTDYIHVRARRGQATDSHSLAERVRREKIS 159
Query: 175 ERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAV 221
ERM+ LQ+LVPGC+KV GKAL+LDEIINY+Q+LQ QVEFLSMKL ++
Sbjct: 160 ERMRTLQNLVPGCDKVTGKALMLDEIINYVQTLQTQVEFLSMKLTSI 206
>AT5G50915.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr5:20710764-20712252 REVERSE
LENGTH=286
Length = 286
Score = 144 bits (363), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 70/107 (65%), Positives = 84/107 (78%), Gaps = 5/107 (4%)
Query: 115 NRNESSKGGEAEVSSGKPAEQTSKAPPEPPKQDYIHVRARRGQATDSHSLAERARREKIS 174
N N S +G E G+ +++ + E P DYIHVRARRGQATDSHSLAER RREKIS
Sbjct: 105 NSNNSKEGVE-----GRKSKKQKRGSKEEPPTDYIHVRARRGQATDSHSLAERVRREKIS 159
Query: 175 ERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAV 221
ERM+ LQ+LVPGC+KV GKAL+LDEIINY+Q+LQ QVEFLSMKL ++
Sbjct: 160 ERMRTLQNLVPGCDKVTGKALMLDEIINYVQTLQTQVEFLSMKLTSI 206
>AT4G36540.1 | Symbols: BEE2 | BR enhanced expression 2 |
chr4:17243699-17244965 FORWARD LENGTH=304
Length = 304
Score = 142 bits (359), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 70/108 (64%), Positives = 81/108 (75%)
Query: 130 GKPAEQTSKAPPEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNK 189
GK ++ E K DYIHVRARRG+ATD HSLAERARREKIS++MK LQD+VPGCNK
Sbjct: 120 GKSNMSNTETSSEIQKPDYIHVRARRGEATDRHSLAERARREKISKKMKCLQDIVPGCNK 179
Query: 190 VIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRLTPGIEVFPPKDF 237
V GKA +LDEIINY+QSLQ+QVEFLSMKL +N L I+ K F
Sbjct: 180 VTGKAGMLDEIINYVQSLQQQVEFLSMKLSVINPELECHIDDLSAKQF 227
>AT4G36540.2 | Symbols: BEE2 | BR enhanced expression 2 |
chr4:17243699-17244965 FORWARD LENGTH=302
Length = 302
Score = 140 bits (353), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 69/106 (65%), Positives = 80/106 (75%)
Query: 130 GKPAEQTSKAPPEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNK 189
GK ++ E K DYIHVRARRG+ATD HSLAERARREKIS++MK LQD+VPGCNK
Sbjct: 120 GKSNMSNTETSSEIQKPDYIHVRARRGEATDRHSLAERARREKISKKMKCLQDIVPGCNK 179
Query: 190 VIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRLTPGIEVFPPK 235
V GKA +LDEIINY+QSLQ+QVEFLSMKL +N L I+ K
Sbjct: 180 VTGKAGMLDEIINYVQSLQQQVEFLSMKLSVINPELECHIDDLSAK 225
>AT3G57800.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr3:21408034-21411321 REVERSE
LENGTH=379
Length = 379
Score = 135 bits (339), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 63/81 (77%), Positives = 73/81 (90%)
Query: 145 KQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYI 204
K Y+HVRARRGQATDSHSLAERARREKI+ RMK+LQ+LVPGC+K+ G ALVLDEIIN++
Sbjct: 198 KLPYVHVRARRGQATDSHSLAERARREKINARMKLLQELVPGCDKIQGTALVLDEIINHV 257
Query: 205 QSLQRQVEFLSMKLEAVNSRL 225
QSLQRQVE LSM+L AVN R+
Sbjct: 258 QSLQRQVEMLSMRLAAVNPRI 278
>AT2G42300.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:17621542-17624635 FORWARD
LENGTH=327
Length = 327
Score = 134 bits (336), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 62/84 (73%), Positives = 74/84 (88%)
Query: 142 EPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEII 201
E K Y+HVRARRGQATD+HSLAERARREKI+ RMK+LQ+LVPGC+K+ G ALVLDEII
Sbjct: 176 ESDKLPYVHVRARRGQATDNHSLAERARREKINARMKLLQELVPGCDKIQGTALVLDEII 235
Query: 202 NYIQSLQRQVEFLSMKLEAVNSRL 225
N++Q+LQRQVE LSM+L AVN R+
Sbjct: 236 NHVQTLQRQVEMLSMRLAAVNPRI 259
>AT1G18400.1 | Symbols: BEE1 | BR enhanced expression 1 |
chr1:6331464-6333576 FORWARD LENGTH=260
Length = 260
Score = 123 bits (308), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 56/75 (74%), Positives = 65/75 (86%)
Query: 149 IHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQ 208
+HVRARRGQATDSHSLAER RR KI+ER++ LQD+VPGC K +G A +LDEIINY+QSLQ
Sbjct: 143 VHVRARRGQATDSHSLAERVRRGKINERLRCLQDMVPGCYKAMGMATMLDEIINYVQSLQ 202
Query: 209 RQVEFLSMKLEAVNS 223
QVEFLSMKL A +S
Sbjct: 203 NQVEFLSMKLTAASS 217
>AT1G73830.1 | Symbols: BEE3 | BR enhanced expression 3 |
chr1:27760027-27761346 FORWARD LENGTH=261
Length = 261
Score = 122 bits (307), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 70/139 (50%), Positives = 90/139 (64%), Gaps = 14/139 (10%)
Query: 88 VKGVSTSXXXXXXXXXXXXXKRMKISGN---RNESSKGGEAEVSSGKPAEQTSKAPPEPP 144
++ VSTS ++ I+GN +N SS+ G + SK E
Sbjct: 92 MEAVSTSENSVSDQTLSTSSAQVSINGNISTKNNSSRRG-----------KRSKNREEEK 140
Query: 145 KQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYI 204
+++ +HVRARRGQATDSHS+AER RR KI+ER+K LQD+VPGC K +G A +LDEIINY+
Sbjct: 141 EREVVHVRARRGQATDSHSIAERVRRGKINERLKCLQDIVPGCYKTMGMATMLDEIINYV 200
Query: 205 QSLQRQVEFLSMKLEAVNS 223
QSLQ QVEFLSMKL A +S
Sbjct: 201 QSLQNQVEFLSMKLTAASS 219
>AT1G73830.2 | Symbols: BEE3 | BR enhanced expression 3 |
chr1:27760027-27761346 FORWARD LENGTH=260
Length = 260
Score = 122 bits (307), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 70/139 (50%), Positives = 90/139 (64%), Gaps = 14/139 (10%)
Query: 88 VKGVSTSXXXXXXXXXXXXXKRMKISGN---RNESSKGGEAEVSSGKPAEQTSKAPPEPP 144
++ VSTS ++ I+GN +N SS+ G + SK E
Sbjct: 92 MEAVSTSENSVSDQTLSTSSAQVSINGNISTKNNSSRRG-----------KRSKNREEEK 140
Query: 145 KQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYI 204
+++ +HVRARRGQATDSHS+AER RR KI+ER+K LQD+VPGC K +G A +LDEIINY+
Sbjct: 141 EREVVHVRARRGQATDSHSIAERVRRGKINERLKCLQDIVPGCYKTMGMATMLDEIINYV 200
Query: 205 QSLQRQVEFLSMKLEAVNS 223
QSLQ QVEFLSMKL A +S
Sbjct: 201 QSLQNQVEFLSMKLTAASS 219
>AT1G25330.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:8880515-8882018 REVERSE
LENGTH=223
Length = 223
Score = 120 bits (300), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 54/78 (69%), Positives = 68/78 (87%)
Query: 146 QDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQ 205
+D +HVRA+RGQATDSHSLAER RREKI+ER+K LQDLVPGC K +G A++LD II+Y++
Sbjct: 99 KDVVHVRAKRGQATDSHSLAERVRREKINERLKCLQDLVPGCYKAMGMAVMLDVIIDYVR 158
Query: 206 SLQRQVEFLSMKLEAVNS 223
SLQ Q+EFLSMKL A ++
Sbjct: 159 SLQNQIEFLSMKLSAASA 176
>AT3G57800.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr3:21408034-21411321 REVERSE
LENGTH=426
Length = 426
Score = 112 bits (280), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 64/131 (48%), Positives = 74/131 (56%), Gaps = 47/131 (35%)
Query: 142 EPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNK------------ 189
E K Y+HVRARRGQATDSHSLAERARREKI+ RMK+LQ+LVPGC+K
Sbjct: 195 ENEKLPYVHVRARRGQATDSHSLAERARREKINARMKLLQELVPGCDKGTDFGGKIKIKV 254
Query: 190 -----------------------------------VIGKALVLDEIINYIQSLQRQVEFL 214
+ G ALVLDEIIN++QSLQRQVE L
Sbjct: 255 CFGVHLLMISGKKVAIFLWKVSCEDLIDCSFSPPRIQGTALVLDEIINHVQSLQRQVEML 314
Query: 215 SMKLEAVNSRL 225
SM+L AVN R+
Sbjct: 315 SMRLAAVNPRI 325
>AT2G24260.1 | Symbols: LRL1 | LJRHL1-like 1 |
chr2:10319646-10322177 REVERSE LENGTH=350
Length = 350
Score = 91.7 bits (226), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 46/73 (63%), Positives = 56/73 (76%), Gaps = 1/73 (1%)
Query: 144 PKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINY 203
P Q +RARRGQATD HS+AER RRE+I+ERMK LQ+LVP NK KA +LDEII+Y
Sbjct: 131 PPQSRTKIRARRGQATDPHSIAERLRRERIAERMKALQELVPNGNKT-DKASMLDEIIDY 189
Query: 204 IQSLQRQVEFLSM 216
++ LQ QV+ LSM
Sbjct: 190 VKFLQLQVKVLSM 202
>AT4G30980.1 | Symbols: LRL2 | LJRHL1-like 2 |
chr4:15079489-15081606 REVERSE LENGTH=310
Length = 310
Score = 91.3 bits (225), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 52/95 (54%), Positives = 64/95 (67%), Gaps = 2/95 (2%)
Query: 122 GGEAEVSSGKPAEQTSKAPPEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQ 181
GG+ + S A T+ P Q VRARRGQATD HS+AER RRE+I+ERMK LQ
Sbjct: 102 GGQTQTQSQATASATTGGATAQP-QTKPKVRARRGQATDPHSIAERLRRERIAERMKSLQ 160
Query: 182 DLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSM 216
+LVP NK KA +LDEII+Y++ LQ QV+ LSM
Sbjct: 161 ELVPNGNKT-DKASMLDEIIDYVKFLQLQVKVLSM 194
>AT5G58010.1 | Symbols: LRL3 | LJRHL1-like 3 |
chr5:23483670-23484889 REVERSE LENGTH=297
Length = 297
Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/66 (68%), Positives = 53/66 (80%), Gaps = 1/66 (1%)
Query: 151 VRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQ 210
VRARRGQATD HS+AER RRE+I+ERMK LQ+LVP NK KA +LDEII Y++ LQ Q
Sbjct: 99 VRARRGQATDPHSIAERLRRERIAERMKSLQELVPNTNKT-DKASMLDEIIEYVRFLQLQ 157
Query: 211 VEFLSM 216
V+ LSM
Sbjct: 158 VKVLSM 163
>AT2G42300.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:17621542-17623469 FORWARD
LENGTH=233
Length = 233
Score = 84.3 bits (207), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 38/49 (77%), Positives = 44/49 (89%)
Query: 142 EPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKV 190
E K Y+HVRARRGQATD+HSLAERARREKI+ RMK+LQ+LVPGC+KV
Sbjct: 176 ESDKLPYVHVRARRGQATDNHSLAERARREKINARMKLLQELVPGCDKV 224
>AT1G09530.2 | Symbols: PIF3, POC1, PAP3 | phytochrome interacting
factor 3 | chr1:3077216-3079367 FORWARD LENGTH=524
Length = 524
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 59/82 (71%), Gaps = 5/82 (6%)
Query: 153 ARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVE 212
++R ++ + H+L+ER RR++I+E+M+ LQ+L+P CNKV KA +LDE I Y++SLQ QV+
Sbjct: 339 SKRSRSAEVHNLSERRRRDRINEKMRALQELIPNCNKV-DKASMLDEAIEYLKSLQLQVQ 397
Query: 213 FLSMKLEAVNSRLTPGIEVFPP 234
+SM A L P + +FPP
Sbjct: 398 IMSM---ASGYYLPPAV-MFPP 415
>AT1G09530.1 | Symbols: PIF3, POC1, PAP3 | phytochrome interacting
factor 3 | chr1:3077216-3079367 FORWARD LENGTH=524
Length = 524
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 59/82 (71%), Gaps = 5/82 (6%)
Query: 153 ARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVE 212
++R ++ + H+L+ER RR++I+E+M+ LQ+L+P CNKV KA +LDE I Y++SLQ QV+
Sbjct: 339 SKRSRSAEVHNLSERRRRDRINEKMRALQELIPNCNKV-DKASMLDEAIEYLKSLQLQVQ 397
Query: 213 FLSMKLEAVNSRLTPGIEVFPP 234
+SM A L P + +FPP
Sbjct: 398 IMSM---ASGYYLPPAV-MFPP 415
>AT2G20180.1 | Symbols: PIL5, PIF1 | phytochrome interacting factor
3-like 5 | chr2:8704525-8706237 REVERSE LENGTH=407
Length = 407
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 49/63 (77%), Gaps = 1/63 (1%)
Query: 154 RRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEF 213
+R +A + H+L+ER RR++I+ERMK LQ+L+P CNK KA +LDE I Y++SLQ Q++
Sbjct: 210 KRSRAAEVHNLSERKRRDRINERMKALQELIPRCNKS-DKASMLDEAIEYMKSLQLQIQM 268
Query: 214 LSM 216
+SM
Sbjct: 269 MSM 271
>AT2G20180.3 | Symbols: PIL5 | phytochrome interacting factor 3-like
5 | chr2:8704276-8706538 REVERSE LENGTH=478
Length = 478
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 49/64 (76%), Gaps = 1/64 (1%)
Query: 153 ARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVE 212
+R +A + H+L+ER RR++I+ERMK LQ+L+P CNK KA +LDE I Y++SLQ Q++
Sbjct: 280 TKRSRAAEVHNLSERKRRDRINERMKALQELIPRCNKS-DKASMLDEAIEYMKSLQLQIQ 338
Query: 213 FLSM 216
+SM
Sbjct: 339 MMSM 342
>AT2G20180.2 | Symbols: PIL5 | phytochrome interacting factor 3-like
5 | chr2:8704525-8706538 REVERSE LENGTH=478
Length = 478
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 49/64 (76%), Gaps = 1/64 (1%)
Query: 153 ARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVE 212
+R +A + H+L+ER RR++I+ERMK LQ+L+P CNK KA +LDE I Y++SLQ Q++
Sbjct: 280 TKRSRAAEVHNLSERKRRDRINERMKALQELIPRCNKS-DKASMLDEAIEYMKSLQLQIQ 338
Query: 213 FLSM 216
+SM
Sbjct: 339 MMSM 342
>AT4G02590.2 | Symbols: UNE12 | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr4:1137968-1140306
REVERSE LENGTH=310
Length = 310
Score = 71.2 bits (173), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 49/105 (46%), Positives = 68/105 (64%), Gaps = 5/105 (4%)
Query: 112 ISGNRNESSKGGEAEVSSGKPAEQTSKAPPEPPKQDYIHVRARRGQATDSHSLAERARRE 171
+ NR S K V G+P +Q + P P VRARRGQATD HS+AER RRE
Sbjct: 111 VVDNRCSSMK----PVFHGQPMQQPPPSAPHQPTSIRPRVRARRGQATDPHSIAERLRRE 166
Query: 172 KISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSM 216
+I+ER++ LQ+LVP NK +A ++DEI++Y++ L+ QV+ LSM
Sbjct: 167 RIAERIRALQELVPTVNKT-DRAAMIDEIVDYVKFLRLQVKVLSM 210
>AT4G02590.1 | Symbols: UNE12 | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr4:1137968-1140306
REVERSE LENGTH=310
Length = 310
Score = 71.2 bits (173), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 49/105 (46%), Positives = 68/105 (64%), Gaps = 5/105 (4%)
Query: 112 ISGNRNESSKGGEAEVSSGKPAEQTSKAPPEPPKQDYIHVRARRGQATDSHSLAERARRE 171
+ NR S K V G+P +Q + P P VRARRGQATD HS+AER RRE
Sbjct: 111 VVDNRCSSMK----PVFHGQPMQQPPPSAPHQPTSIRPRVRARRGQATDPHSIAERLRRE 166
Query: 172 KISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSM 216
+I+ER++ LQ+LVP NK +A ++DEI++Y++ L+ QV+ LSM
Sbjct: 167 RIAERIRALQELVPTVNKT-DRAAMIDEIVDYVKFLRLQVKVLSM 210
>AT4G02590.3 | Symbols: UNE12 | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr4:1137968-1140117
REVERSE LENGTH=247
Length = 247
Score = 70.9 bits (172), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 49/105 (46%), Positives = 68/105 (64%), Gaps = 5/105 (4%)
Query: 112 ISGNRNESSKGGEAEVSSGKPAEQTSKAPPEPPKQDYIHVRARRGQATDSHSLAERARRE 171
+ NR S K V G+P +Q + P P VRARRGQATD HS+AER RRE
Sbjct: 48 VVDNRCSSMK----PVFHGQPMQQPPPSAPHQPTSIRPRVRARRGQATDPHSIAERLRRE 103
Query: 172 KISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSM 216
+I+ER++ LQ+LVP NK +A ++DEI++Y++ L+ QV+ LSM
Sbjct: 104 RIAERIRALQELVPTVNKT-DRAAMIDEIVDYVKFLRLQVKVLSM 147
>AT1G03040.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:704279-706457 REVERSE
LENGTH=302
Length = 302
Score = 70.9 bits (172), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 48/92 (52%), Positives = 66/92 (71%), Gaps = 5/92 (5%)
Query: 127 VSSGKPAEQTSKAPPEPPKQDYIH--VRARRGQATDSHSLAERARREKISERMKILQDLV 184
+ G+P Q APP P +Q I VRARRGQATD HS+AER RRE+I+ER++ LQ+LV
Sbjct: 120 IFHGQPMSQ--PAPPMPHQQSTIRPRVRARRGQATDPHSIAERLRRERIAERIRSLQELV 177
Query: 185 PGCNKVIGKALVLDEIINYIQSLQRQVEFLSM 216
P NK +A ++DEI++Y++ L+ QV+ LSM
Sbjct: 178 PTVNKT-DRAAMIDEIVDYVKFLRLQVKVLSM 208
>AT1G03040.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:704279-706457 REVERSE
LENGTH=297
Length = 297
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/92 (53%), Positives = 66/92 (71%), Gaps = 4/92 (4%)
Query: 127 VSSGKPAEQTSKAPPEPPKQDYIH--VRARRGQATDSHSLAERARREKISERMKILQDLV 184
SS KP + APP P +Q I VRARRGQATD HS+AER RRE+I+ER++ LQ+LV
Sbjct: 114 CSSMKPP-MSQPAPPMPHQQSTIRPRVRARRGQATDPHSIAERLRRERIAERIRSLQELV 172
Query: 185 PGCNKVIGKALVLDEIINYIQSLQRQVEFLSM 216
P NK +A ++DEI++Y++ L+ QV+ LSM
Sbjct: 173 PTVNKT-DRAAMIDEIVDYVKFLRLQVKVLSM 203
>AT1G51140.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:18943802-18945613 REVERSE
LENGTH=379
Length = 379
Score = 67.8 bits (164), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 43/64 (67%)
Query: 151 VRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQ 210
+RA+RG AT S+AER RR KISERM+ LQDLVP + A +LD + YI+ LQ Q
Sbjct: 304 IRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDTQTNTADMLDLAVQYIKDLQEQ 363
Query: 211 VEFL 214
V+ L
Sbjct: 364 VKAL 367
>AT2G42280.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:17611428-17613163 REVERSE
LENGTH=359
Length = 359
Score = 67.4 bits (163), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 46/65 (70%)
Query: 151 VRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQ 210
+RA+RG AT S+AER RR +ISERM+ LQ+LVP +K + +LD ++YI+ LQRQ
Sbjct: 279 IRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTSDMLDLAVDYIKDLQRQ 338
Query: 211 VEFLS 215
+ L+
Sbjct: 339 YKILN 343
>AT4G28800.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr4:14221970-14224075 FORWARD
LENGTH=445
Length = 445
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 49/72 (68%), Gaps = 2/72 (2%)
Query: 154 RRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVE- 212
+R + + H+LAER RREKI+E+MK LQ L+P CNK K LD+ I Y++SLQ Q++
Sbjct: 252 KRSRTAEMHNLAERRRREKINEKMKTLQQLIPRCNKST-KVSTLDDAIEYVKSLQSQIQG 310
Query: 213 FLSMKLEAVNSR 224
+S + A N++
Sbjct: 311 MMSPMMNAGNTQ 322
>AT4G09180.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr4:5847513-5849500 FORWARD
LENGTH=262
Length = 262
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 47/67 (70%)
Query: 149 IHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQ 208
VRA+RG AT S+AER RR +IS+R++ LQ+LVP +K A +L+E + Y++ LQ
Sbjct: 182 FRVRAKRGCATHPRSIAERVRRTRISDRIRKLQELVPNMDKQTNTADMLEEAVEYVKVLQ 241
Query: 209 RQVEFLS 215
RQ++ L+
Sbjct: 242 RQIQELT 248
>AT4G28815.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr4:14228719-14230288 FORWARD
LENGTH=307
Length = 307
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 44/58 (75%), Gaps = 1/58 (1%)
Query: 154 RRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQV 211
+R +A + H+LAER RREKI+ERMK LQ L+P CNK K +L+++I Y++SL+ Q+
Sbjct: 147 KRSRAAEMHNLAERRRREKINERMKTLQQLIPRCNKST-KVSMLEDVIEYVKSLEMQI 203
>AT2G46970.1 | Symbols: PIL1 | phytochrome interacting factor 3-like
1 | chr2:19295617-19297678 REVERSE LENGTH=416
Length = 416
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 49/73 (67%), Gaps = 6/73 (8%)
Query: 149 IHVRAR-----RGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINY 203
+H R R R ++T+ H L ER RR++ +++M+ LQDL+P C K KA +LDE I Y
Sbjct: 216 VHARTRKPVTKRKRSTEVHKLYERKRRDEFNKKMRALQDLLPNCYK-DDKASLLDEAIKY 274
Query: 204 IQSLQRQVEFLSM 216
+++LQ QV+ +SM
Sbjct: 275 MRTLQLQVQMMSM 287
>AT4G33880.1 | Symbols: RSL2 | ROOT HAIR DEFECTIVE 6-LIKE 2 |
chr4:16239566-16241052 REVERSE LENGTH=352
Length = 352
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 54/84 (64%), Gaps = 3/84 (3%)
Query: 134 EQTSKAPPEPPKQDYIH--VRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVI 191
E +S +P K ++ RA RG ATD SL R RRE+I+ER++ILQ+LVP KV
Sbjct: 247 EDSSSKEDDPSKALNLNGKTRASRGAATDPQSLYARKRRERINERLRILQNLVPNGTKV- 305
Query: 192 GKALVLDEIINYIQSLQRQVEFLS 215
+ +L+E ++Y++ LQ Q++ LS
Sbjct: 306 DISTMLEEAVHYVKFLQLQIKLLS 329
>AT4G28790.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr4:14218329-14220173 FORWARD
LENGTH=413
Length = 413
Score = 64.3 bits (155), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 46/64 (71%), Gaps = 1/64 (1%)
Query: 153 ARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVE 212
++R +A H L+ER RR+KI+E MK LQ+L+P C K ++ +LD++I Y++SLQ Q++
Sbjct: 273 SKRSRAAIMHKLSERRRRQKINEMMKALQELLPRCTKT-DRSSMLDDVIEYVKSLQSQIQ 331
Query: 213 FLSM 216
SM
Sbjct: 332 MFSM 335
>AT1G35460.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:13040092-13041907 FORWARD
LENGTH=259
Length = 259
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 47/65 (72%)
Query: 151 VRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQ 210
VRA+RG AT S+AER RR +IS+R++ LQ+LVP +K A +L+E + Y+++LQ Q
Sbjct: 181 VRAKRGCATHPRSIAERVRRTRISDRIRRLQELVPNMDKQTNTADMLEEAVEYVKALQSQ 240
Query: 211 VEFLS 215
++ L+
Sbjct: 241 IQELT 245
>AT2G14760.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:6321840-6323312 REVERSE
LENGTH=328
Length = 328
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 44/65 (67%), Gaps = 1/65 (1%)
Query: 151 VRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQ 210
RA RG ATD SL R RRE+I+ER++ILQ LVP KV + +L+E + Y++ LQ Q
Sbjct: 237 TRASRGAATDPQSLYARKRRERINERLRILQHLVPNGTKV-DISTMLEEAVQYVKFLQLQ 295
Query: 211 VEFLS 215
++ LS
Sbjct: 296 IKLLS 300
>AT4G00050.1 | Symbols: UNE10 | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr4:17863-19848
FORWARD LENGTH=399
Length = 399
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 44/65 (67%), Gaps = 1/65 (1%)
Query: 151 VRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQ 210
V +R +A H+ +ER RR+KI++RMK LQ LVP +K KA +LDE+I Y++ LQ Q
Sbjct: 207 VSTKRSRAAAIHNQSERKRRDKINQRMKTLQKLVPNSSKT-DKASMLDEVIEYLKQLQAQ 265
Query: 211 VEFLS 215
V +S
Sbjct: 266 VSMMS 270
>AT1G27740.1 | Symbols: RSL4 | root hair defective 6-like 4 |
chr1:9654753-9655806 FORWARD LENGTH=258
Length = 258
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 45/65 (69%), Gaps = 1/65 (1%)
Query: 151 VRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQ 210
RA +G ATD SL R RREKI+ER+K LQ+LVP KV + +L+E ++Y++ LQ Q
Sbjct: 167 TRATKGTATDPQSLYARKRREKINERLKTLQNLVPNGTKV-DISTMLEEAVHYVKFLQLQ 225
Query: 211 VEFLS 215
++ LS
Sbjct: 226 IKLLS 230
>AT4G36930.1 | Symbols: SPT | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr4:17414167-17415945
FORWARD LENGTH=373
Length = 373
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 44/61 (72%), Gaps = 1/61 (1%)
Query: 157 QATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSM 216
+A + H+L+E+ RR +I+E+MK LQ L+P NK KA +LDE I Y++ LQ QV+ L+M
Sbjct: 197 RAAEVHNLSEKRRRSRINEKMKALQSLIPNSNKT-DKASMLDEAIEYLKQLQLQVQMLTM 255
Query: 217 K 217
+
Sbjct: 256 R 256
>AT3G59060.1 | Symbols: PIL6, PIF5 | phytochrome interacting factor
3-like 6 | chr3:21828189-21829895 REVERSE LENGTH=442
Length = 442
Score = 60.8 bits (146), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 49/64 (76%), Gaps = 1/64 (1%)
Query: 153 ARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVE 212
RR +A + H+L+ER RR++I+ERMK LQ+L+P C++ KA +LDE I+Y++SLQ Q++
Sbjct: 252 TRRSRAAEVHNLSERRRRDRINERMKALQELIPHCSRT-DKASILDEAIDYLKSLQMQLQ 310
Query: 213 FLSM 216
+ M
Sbjct: 311 VMWM 314
>AT3G59060.4 | Symbols: PIL6, PIF5 | phytochrome interacting factor
3-like 6 | chr3:21828189-21829895 REVERSE LENGTH=444
Length = 444
Score = 60.8 bits (146), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 49/64 (76%), Gaps = 1/64 (1%)
Query: 153 ARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVE 212
RR +A + H+L+ER RR++I+ERMK LQ+L+P C++ KA +LDE I+Y++SLQ Q++
Sbjct: 252 TRRSRAAEVHNLSERRRRDRINERMKALQELIPHCSRT-DKASILDEAIDYLKSLQMQLQ 310
Query: 213 FLSM 216
+ M
Sbjct: 311 VMWM 314
>AT3G59060.3 | Symbols: PIL6, PIF5 | phytochrome interacting factor
3-like 6 | chr3:21828189-21829895 REVERSE LENGTH=444
Length = 444
Score = 60.8 bits (146), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 49/64 (76%), Gaps = 1/64 (1%)
Query: 153 ARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVE 212
RR +A + H+L+ER RR++I+ERMK LQ+L+P C++ KA +LDE I+Y++SLQ Q++
Sbjct: 252 TRRSRAAEVHNLSERRRRDRINERMKALQELIPHCSRT-DKASILDEAIDYLKSLQMQLQ 310
Query: 213 FLSM 216
+ M
Sbjct: 311 VMWM 314
>AT3G59060.2 | Symbols: PIL6, PIF5 | phytochrome interacting factor
3-like 6 | chr3:21828189-21829895 REVERSE LENGTH=444
Length = 444
Score = 60.8 bits (146), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 49/64 (76%), Gaps = 1/64 (1%)
Query: 153 ARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVE 212
RR +A + H+L+ER RR++I+ERMK LQ+L+P C++ KA +LDE I+Y++SLQ Q++
Sbjct: 252 TRRSRAAEVHNLSERRRRDRINERMKALQELIPHCSRT-DKASILDEAIDYLKSLQMQLQ 310
Query: 213 FLSM 216
+ M
Sbjct: 311 VMWM 314
>AT2G43140.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:17931680-17935639 REVERSE
LENGTH=309
Length = 309
Score = 60.8 bits (146), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 44/69 (63%)
Query: 151 VRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQ 210
RA+RG AT S+AER RR +IS ++K LQ+LVP +K A +LD + +I+ LQ Q
Sbjct: 231 ARAKRGFATHPRSIAERERRTRISGKLKKLQELVPNMDKQTSYADMLDLAVEHIKGLQHQ 290
Query: 211 VEFLSMKLE 219
VE L +E
Sbjct: 291 VESLEKGME 299
>AT2G43010.1 | Symbols: PIF4, SRL2, AtPIF4 | phytochrome interacting
factor 4 | chr2:17887003-17888823 FORWARD LENGTH=430
Length = 430
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/61 (50%), Positives = 48/61 (78%), Gaps = 1/61 (1%)
Query: 154 RRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEF 213
RR +A + H+L+ER RR++I+ERMK LQ+L+P C+K KA +LDE I+Y++SLQ Q++
Sbjct: 254 RRSRAAEVHNLSERRRRDRINERMKALQELIPHCSKT-DKASILDEAIDYLKSLQLQLQV 312
Query: 214 L 214
+
Sbjct: 313 M 313
>AT2G43010.2 | Symbols: PIF4, SRL2, AtPIF4 | phytochrome interacting
factor 4 | chr2:17887003-17888823 FORWARD LENGTH=428
Length = 428
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/61 (50%), Positives = 48/61 (78%), Gaps = 1/61 (1%)
Query: 154 RRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEF 213
RR +A + H+L+ER RR++I+ERMK LQ+L+P C+K KA +LDE I+Y++SLQ Q++
Sbjct: 254 RRSRAAEVHNLSERRRRDRINERMKALQELIPHCSKT-DKASILDEAIDYLKSLQLQLQV 312
Query: 214 L 214
+
Sbjct: 313 M 313
>AT4G28790.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr4:14218329-14219887 FORWARD
LENGTH=340
Length = 340
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 44/60 (73%), Gaps = 1/60 (1%)
Query: 153 ARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVE 212
++R +A H L+ER RR+KI+E MK LQ+L+P C K ++ +LD++I Y++SLQ Q++
Sbjct: 273 SKRSRAAIMHKLSERRRRQKINEMMKALQELLPRCTKT-DRSSMLDDVIEYVKSLQSQIQ 331
>AT2G43140.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:17932376-17935639 REVERSE
LENGTH=297
Length = 297
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 41/62 (66%)
Query: 151 VRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQ 210
RA+RG AT S+AER RR +IS ++K LQ+LVP +K A +LD + +I+ LQ Q
Sbjct: 233 ARAKRGFATHPRSIAERERRTRISGKLKKLQELVPNMDKQTSYADMLDLAVEHIKGLQHQ 292
Query: 211 VE 212
VE
Sbjct: 293 VE 294
>AT1G05805.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:1744843-1747427 FORWARD
LENGTH=362
Length = 362
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 43/64 (67%)
Query: 151 VRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQ 210
+RA+RG AT S+AER RR +IS ++K LQDLVP +K + +LD + +I+ LQ Q
Sbjct: 283 IRAKRGCATHPRSIAERERRTRISGKLKKLQDLVPNMDKQTSYSDMLDLAVQHIKGLQHQ 342
Query: 211 VEFL 214
++ L
Sbjct: 343 LQNL 346
>AT5G67110.1 | Symbols: ALC | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr5:26785332-26786338
REVERSE LENGTH=210
Length = 210
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 40/55 (72%), Gaps = 1/55 (1%)
Query: 162 HSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSM 216
H+L+E+ RR KI+E+MK LQ L+P NK KA +LDE I Y++ LQ QV+ L++
Sbjct: 98 HNLSEKKRRSKINEKMKALQKLIPNSNKT-DKASMLDEAIEYLKQLQLQVQTLAV 151
>AT5G43175.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr5:17334261-17335234 FORWARD
LENGTH=223
Length = 223
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Query: 152 RARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQV 211
+A RG A+D SL R RRE+I++R+K LQ LVP KV + +L++ ++Y++ LQ Q+
Sbjct: 133 KANRGIASDPQSLYARKRRERINDRLKTLQSLVPNGTKV-DISTMLEDAVHYVKFLQLQI 191
Query: 212 EFLS 215
+ LS
Sbjct: 192 KLLS 195
>AT3G21330.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr3:7507720-7508841 FORWARD
LENGTH=373
Length = 373
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 54/95 (56%), Gaps = 10/95 (10%)
Query: 142 EPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEII 201
E PK+ + + +TD ++A R RRE+ISE++++LQ LVPG K + A +LDE
Sbjct: 266 EKPKRKNVKI------STDPQTVAARQRRERISEKIRVLQTLVPGGTK-MDTASMLDEAA 318
Query: 202 NYIQSLQRQV---EFLSMKLEAVNSRLTPGIEVFP 233
NY++ L+ QV E L KL+ N + FP
Sbjct: 319 NYLKFLRAQVKALENLRPKLDQTNLSFSSAPTSFP 353
>AT1G66470.1 | Symbols: RHD6 | ROOT HAIR DEFECTIVE6 |
chr1:24795326-24796598 FORWARD LENGTH=298
Length = 298
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 40/56 (71%), Gaps = 1/56 (1%)
Query: 160 DSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLS 215
D SLA + RRE+ISER+KILQ+LVP KV +L++ I+Y++ LQ QV+ L+
Sbjct: 204 DPQSLAAKNRRERISERLKILQELVPNGTKV-DLVTMLEKAISYVKFLQVQVKVLA 258
>AT5G01310.1 | Symbols: APTX | APRATAXIN-like | chr5:125304-128960
FORWARD LENGTH=912
Length = 912
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 8/93 (8%)
Query: 152 RARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQV 211
R+ +TD S+A R RR +IS+R KILQ +VPG K + +LDE I+Y++ L+ Q+
Sbjct: 38 RSTSTLSTDPQSVAARDRRHRISDRFKILQSMVPGGAK-MDTVSMLDEAISYVKFLKAQI 96
Query: 212 EFLSMKLEAVNSRLT-------PGIEVFPPKDF 237
+ L +N T PG F PK F
Sbjct: 97 WYHQNMLLFINDHETTSSCTYSPGAGEFGPKLF 129
>AT2G14760.3 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:6321840-6323312 REVERSE
LENGTH=341
Length = 341
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 44/78 (56%), Gaps = 14/78 (17%)
Query: 151 VRARRGQATDSHSLAER-------------ARREKISERMKILQDLVPGCNKVIGKALVL 197
RA RG ATD SL R RRE+I+ER++ILQ LVP KV + +L
Sbjct: 237 TRASRGAATDPQSLYARLKQLNKVHCMMVQKRRERINERLRILQHLVPNGTKV-DISTML 295
Query: 198 DEIINYIQSLQRQVEFLS 215
+E + Y++ LQ Q++ LS
Sbjct: 296 EEAVQYVKFLQLQIKLLS 313
>AT5G37800.1 | Symbols: RSL1, ATRSL1 | RHD SIX-LIKE 1 |
chr5:15036197-15037574 FORWARD LENGTH=307
Length = 307
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 39/56 (69%), Gaps = 1/56 (1%)
Query: 160 DSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLS 215
D SLA + RRE+ISER+K+LQ+LVP KV +L++ I Y++ LQ QV+ L+
Sbjct: 210 DPQSLAAKNRRERISERLKVLQELVPNGTKV-DLVTMLEKAIGYVKFLQVQVKVLA 264
>AT5G61270.1 | Symbols: PIF7 | phytochrome-interacting factor7 |
chr5:24638873-24640439 REVERSE LENGTH=366
Length = 366
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 54/82 (65%), Gaps = 3/82 (3%)
Query: 154 RRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEF 213
RRG+A H+ +ER RR++I++RM+ LQ L+P +K K +LD++I +++ LQ QV+F
Sbjct: 163 RRGRAAAIHNESERRRRDRINQRMRTLQKLLPTASKA-DKVSILDDVIEHLKQLQAQVQF 221
Query: 214 LSMKLEAVNSRLTPGIEVFPPK 235
+S++ + P ++ PP+
Sbjct: 222 MSLRANLPQQMMIP--QLPPPQ 241
>AT5G61270.2 | Symbols: PIF7 | phytochrome-interacting factor7 |
chr5:24638873-24640031 REVERSE LENGTH=278
Length = 278
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 52/81 (64%), Gaps = 4/81 (4%)
Query: 154 RRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEF 213
RRG+A H+ +ER RR++I++RM+ LQ L+P +K K +LD++I +++ LQ QV+F
Sbjct: 75 RRGRAAAIHNESERRRRDRINQRMRTLQKLLPTASKA-DKVSILDDVIEHLKQLQAQVQF 133
Query: 214 LSMKLEAVNSRLTPGIEVFPP 234
+S++ + P + PP
Sbjct: 134 MSLRANLPQQMMIPQL---PP 151
>AT5G41315.1 | Symbols: GL3, MYC6.2 | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr5:16529457-16532866
FORWARD LENGTH=637
Length = 637
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 159 TDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKL 218
T +H++ E+ RREK++ER L+ ++P NK I K +LD+ I Y+Q L+R+V+ L
Sbjct: 439 TGNHAVLEKKRREKLNERFMTLRKIIPSINK-IDKVSILDDTIEYLQELERRVQELESCR 497
Query: 219 EAVNS 223
E+ ++
Sbjct: 498 ESTDT 502
>AT1G63650.3 | Symbols: EGL3 | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr1:23599809-23602734
FORWARD LENGTH=596
Length = 596
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 41/58 (70%), Gaps = 1/58 (1%)
Query: 157 QATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFL 214
+ T +H+L+E+ RREK++ER L+ ++P +K I K +LD+ I Y+Q LQ++V+ L
Sbjct: 401 EETGNHALSEKKRREKLNERFMTLRSIIPSISK-IDKVSILDDTIEYLQDLQKRVQEL 457
>AT1G63650.2 | Symbols: EGL3, EGL1, ATMYC-2 | basic helix-loop-helix
(bHLH) DNA-binding superfamily protein |
chr1:23599809-23602734 FORWARD LENGTH=596
Length = 596
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 41/58 (70%), Gaps = 1/58 (1%)
Query: 157 QATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFL 214
+ T +H+L+E+ RREK++ER L+ ++P +K I K +LD+ I Y+Q LQ++V+ L
Sbjct: 401 EETGNHALSEKKRREKLNERFMTLRSIIPSISK-IDKVSILDDTIEYLQDLQKRVQEL 457
>AT1G63650.1 | Symbols: EGL3, EGL1, ATMYC-2 | basic helix-loop-helix
(bHLH) DNA-binding superfamily protein |
chr1:23599809-23602734 FORWARD LENGTH=596
Length = 596
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 41/58 (70%), Gaps = 1/58 (1%)
Query: 157 QATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFL 214
+ T +H+L+E+ RREK++ER L+ ++P +K I K +LD+ I Y+Q LQ++V+ L
Sbjct: 401 EETGNHALSEKKRREKLNERFMTLRSIIPSISK-IDKVSILDDTIEYLQDLQKRVQEL 457
>AT1G69010.1 | Symbols: BIM2 | BES1-interacting Myc-like protein 2 |
chr1:25941804-25943599 FORWARD LENGTH=311
Length = 311
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 35/51 (68%)
Query: 162 HSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVE 212
HS+ E+ RR KI+ER +IL++L+P + A L E+I+Y+Q LQ +V+
Sbjct: 50 HSVTEQRRRSKINERFQILRELIPNSEQKRDTASFLLEVIDYVQYLQEKVQ 100
>AT4G28811.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr4:14225335-14227840 FORWARD
LENGTH=544
Length = 544
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 47/62 (75%), Gaps = 1/62 (1%)
Query: 154 RRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEF 213
+R +A D H+L+ER RRE+I+ERMK LQ+L+P C K K +L+++I Y++SLQ Q++
Sbjct: 354 KRSRAADMHNLSERRRRERINERMKTLQELLPRCRKT-DKVSMLEDVIEYVKSLQLQIQM 412
Query: 214 LS 215
+S
Sbjct: 413 MS 414
>AT3G62090.1 | Symbols: PIL2, PIF6 | phytochrome interacting factor
3-like 2 | chr3:22989097-22990495 REVERSE LENGTH=346
Length = 346
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Query: 153 ARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVE 212
+R + ++++ ER +R I+++M+ LQ+L+P +K +++ LDE INY+ +LQ QV+
Sbjct: 167 VKRKRNAEAYNSPERNQRNDINKKMRTLQNLLPNSHKDDNESM-LDEAINYMTNLQLQVQ 225
Query: 213 FLSM 216
++M
Sbjct: 226 MMTM 229
>AT3G62090.2 | Symbols: PIL2, PIF6 | phytochrome interacting factor
3-like 2 | chr3:22989097-22990546 REVERSE LENGTH=363
Length = 363
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Query: 153 ARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVE 212
+R + ++++ ER +R I+++M+ LQ+L+P +K +++ LDE INY+ +LQ QV+
Sbjct: 184 VKRKRNAEAYNSPERNQRNDINKKMRTLQNLLPNSHKDDNESM-LDEAINYMTNLQLQVQ 242
Query: 213 FLSM 216
++M
Sbjct: 243 MMTM 246
>AT4G00120.1 | Symbols: IND1, GT140, IND, EDA33 | basic
helix-loop-helix (bHLH) DNA-binding superfamily protein
| chr4:42601-43197 REVERSE LENGTH=198
Length = 198
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
Query: 160 DSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFL 214
D ++ R RRE+ISE+++IL+ +VPG K + A +LDE I Y + L+RQV L
Sbjct: 121 DPQTVVARRRRERISEKIRILKRIVPGGAK-MDTASMLDEAIRYTKFLKRQVRIL 174