Miyakogusa Predicted Gene
- Lj2g3v1349490.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v1349490.1 Non Chatacterized Hit- tr|D7T675|D7T675_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,31.7,5e-18,seg,NULL; GUB_WAK_bind,Wall-associated receptor kinase
galacturonan-binding domain; WAK_assoc,NULL,CUFF.36812.1
(299 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G10380.1 | Symbols: | Putative membrane lipoprotein | chr1:3... 287 6e-78
AT5G50290.1 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 89 5e-18
AT3G17350.1 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 86 3e-17
AT1G11915.1 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 74 1e-13
AT5G02070.1 | Symbols: | Protein kinase family protein | chr5:4... 51 9e-07
>AT1G10380.1 | Symbols: | Putative membrane lipoprotein |
chr1:3400706-3402110 FORWARD LENGTH=305
Length = 305
Score = 287 bits (734), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 151/278 (54%), Positives = 197/278 (70%), Gaps = 11/278 (3%)
Query: 26 QICQRNCGQT-LKYPFGSGPGCGDPRFQPHVTCSEQRLTFTTHT--GSYPITSIDYTNQL 82
Q CQ+ CGQ +KYP G+G GCGDPRF ++TC + T T T GSYPITS+DY Q
Sbjct: 27 QACQKTCGQIPIKYPLGTGSGCGDPRFTRYITCDPDQQTLTLTTHTGSYPITSVDYAKQE 86
Query: 83 IHISDPTMSTCSCTLPSKGFGLDGDAPFTFDDSTIFALVDCSMNSSSICKSRSYDDGSNS 142
I+++DP+MSTC+CT PS GFGLD DAPF+F D T+F L+DCS++ S + S +GS
Sbjct: 87 IYVTDPSMSTCACTRPSHGFGLDWDAPFSFHDDTVFTLLDCSVDESPVFTPLS--NGSGR 144
Query: 143 KLQCD-QSTPICDFLYS-CRPISTINLPISTCCVYAPVNLGPSFDMVLQKLQCASYTGFY 200
CD QS+ IC FLYS CR IS INL +STCCVY P++LGPSF+M L KL+C+SY+GFY
Sbjct: 145 VSLCDRQSSSICTFLYSNCRAISLINLQVSTCCVYVPLDLGPSFEMDLNKLKCSSYSGFY 204
Query: 201 NYN-DQQSDPEKWNYGIALKYKFSVTNDYPPSCAACERSNGFCGYSGPYNSFICNCPNGF 259
N Q+S PE WNYGIALKYKF+V ++YP C +CERSNG CG++ +SF+CNCP G
Sbjct: 205 NLGPGQESHPENWNYGIALKYKFNVFDEYPGVCGSCERSNGACGFNTQSSSFVCNCPGGI 264
Query: 260 NTTTDCFFISDNNGFRN---GVAWLIYPVAWSLVSFFL 294
NTT+DCFF+ ++ W++YP++W +V +
Sbjct: 265 NTTSDCFFLYNSASILVPWFSREWVMYPLSWFVVWMVM 302
>AT5G50290.1 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: endomembrane
system; BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT3G17350.1); Has 300 Blast hits
to 300 proteins in 14 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 300; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink). |
chr5:20461814-20463896 FORWARD LENGTH=303
Length = 303
Score = 88.6 bits (218), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 79/255 (30%), Positives = 113/255 (44%), Gaps = 27/255 (10%)
Query: 28 CQRNCGQ-TLKYPFGSGPGCGDPRFQPHVTCSEQRLTFTTHTGSYPITSIDYTNQLIHIS 86
C+ CG T+ YPFG GCG P ++ + C L F +GSY + IDY Q I +
Sbjct: 22 CRSYCGNITVDYPFGIRNGCGHPGYRDLLFCMNDVLMFHISSGSYRVLDIDYAYQSITLH 81
Query: 87 DPTMSTC-SCTLPSKGFGLDGD---AP-FTFDDSTIFALVDCSMNSSSICKSRSYDDGSN 141
DP MS C + L KG G + + P F +F L+ CS KS +
Sbjct: 82 DPHMSNCETIVLGGKGNGFEAEDWRTPYFNPTSDNVFMLIGCSP------KSPIFQGFPE 135
Query: 142 SKLQCDQSTPI-CDFLYSCRPISTINL--PISTCCVYAPVNLGPSFDMV----LQKLQCA 194
K+ C + + C+ SC + P P+ G F+ V L KL+C
Sbjct: 136 KKVPCRNISGMSCEEYMSCPAWDMVGYRQPGIHSGSGPPMCCGVGFESVKAINLSKLECE 195
Query: 195 SYTGFYNYND-QQSDPEKWNYGIALKYKFSVTNDYPPSCAACERSNGFCGYS---GPYNS 250
Y+ YN + P W YGI +KY+ ++ + C AC ++G CGY G
Sbjct: 196 GYSSAYNLAPLKLRGPSDWAYGIRVKYELQGSDAF---CRACVATSGTCGYEPADGGGLR 252
Query: 251 FICNCPNGFNTTTDC 265
+C C N N+TT+C
Sbjct: 253 HVCMCDN-HNSTTNC 266
>AT3G17350.1 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: endomembrane
system; EXPRESSED IN: 19 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G50290.1);
Has 203 Blast hits to 203 proteins in 13 species: Archae
- 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 203;
Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
| chr3:5934111-5935276 FORWARD LENGTH=301
Length = 301
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 84/256 (32%), Positives = 111/256 (43%), Gaps = 35/256 (13%)
Query: 25 AQICQRNCGQT-LKYPFGSGPGCGDPRFQPHVTCSEQRLTFTTHTGSYPITSIDYTNQLI 83
A C+ CG + YPFG GCG P+++ CS L FTT +GSY + SIDY + +
Sbjct: 28 ATSCRTLCGNIPINYPFGIDGGCGSPQYRGMFNCSTD-LYFTTPSGSYKVQSIDYEKKTM 86
Query: 84 HISDPTMSTCSCTLPSKGFGLDGDAPFTFDD---STIFALVDCSMNSSSICKSRSYDDGS 140
I DP MSTCS P F + D T T+FAL +CS +S + R+
Sbjct: 87 VIFDPAMSTCSILQPHHDFKM-ADIQNTLIRPSYDTVFALFNCSNDSPVHNRYRN----- 140
Query: 141 NSKLQCDQSTPICDFLYSC----RPISTI-----NLPIST---CCVYAPVNLGPSFDMVL 188
L + + CD LYS R +T N + T CC N M +
Sbjct: 141 ---LCFNAAGHSCDELYSSCTSFRIFNTTSPYGNNSTVHTTPYCCF---TNYDTVRVMSM 194
Query: 189 QKLQCASYTGFYNYNDQQS-DPEKWNYGIALKYKFSVTNDYPPSCAACERSNGFCGYSGP 247
L C+ YT + + P W+YGI L Y SVT C C +S G CG+
Sbjct: 195 NILDCSHYTTVIDNGKMRGVGPLDWSYGIELSY--SVT---EIGCDRCRKSGGTCGFDAE 249
Query: 248 YNSFICNCPNGFNTTT 263
F+C C N T
Sbjct: 250 TEIFLCQCSGSNNNPT 265
>AT1G11915.1 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: endomembrane
system; EXPRESSED IN: root; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G17350.1);
Has 261 Blast hits to 261 proteins in 13 species: Archae
- 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 261;
Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
| chr1:4021830-4023084 FORWARD LENGTH=329
Length = 329
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 74/275 (26%), Positives = 115/275 (41%), Gaps = 43/275 (15%)
Query: 27 ICQRNCGQT-LKYPFGSGPGCGDPRFQPHVTCSEQ--RLTFTTHTGSYPITSIDYTNQLI 83
+C+ +CG + YPF GCG P ++ + CS+ +L T +G YP+ SI Y++ +
Sbjct: 30 LCRSSCGNIPINYPFSIDDGCGSPYYRHMLICSDNDTKLELRTPSGKYPVKSISYSDPHL 89
Query: 84 HISDPTMSTCSCT---LPSKGFGLDGDAPFTFDDSTIFALVDCSMNSSSICKSRSYDDGS 140
+SDP M C P++ F +D FT + +C+ + +
Sbjct: 90 LVSDPFMWNCQDRDNFRPTRSFSIDSSTHFTVSPQNDYLFFNCNTDKVIV---------E 140
Query: 141 NSKLQCDQ-----STPICDFLYSCRPISTINLPIS---TCCVYAPVNLGPSFDMVLQKLQ 192
L C++ + Y CR + + +CC Y P S ++LQ
Sbjct: 141 PKPLFCERFPDRCDSSCDSSSYLCRHLPECGSALGSRVSCCSYYP-KATQSLRLMLQ--D 197
Query: 193 CASYTGFYNYNDQQSD------PEKWNYGIALKYKFSVTNDYPPSCAACE---RSNGFCG 243
CA+YT Y + + PE YGI + Y+F VT C C+ + G CG
Sbjct: 198 CATYTSVYWRSTGVENAPYDQFPE---YGIRVDYEFPVTM----KCLLCQETTKGGGVCG 250
Query: 244 YSGPYNSFICNCPNGFNTTTDCFFISDNNGFRNGV 278
++ F+C C G N TT C S N R G
Sbjct: 251 FNTRTRDFLCLCKQG-NVTTYCKDPSLVNHKRVGA 284
>AT5G02070.1 | Symbols: | Protein kinase family protein |
chr5:405895-408220 REVERSE LENGTH=657
Length = 657
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 50/100 (50%), Gaps = 8/100 (8%)
Query: 31 NCG-QTLKYPFGSGPGCGDPRFQPHVTCSEQRLTF-TTHTGSYPITSIDYTNQLIHISDP 88
NCG + YP +GP CGD ++ + C +L F H SY ITSI+ Q I + P
Sbjct: 45 NCGPMVVPYPLSTGPTCGDQAYR--INCVGGKLYFGALHGSSYVITSINSVTQRIVLRPP 102
Query: 89 TM-STCSCT---LPSKGFGLDGDAPFTFDDSTIFALVDCS 124
+ S+ SC + +G LD PF+ S L++CS
Sbjct: 103 GLASSVSCISADVSKQGLELDPHLPFSITSSNTILLLNCS 142