Miyakogusa Predicted Gene

Lj2g3v1349220.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1349220.1 Non Chatacterized Hit- tr|D7L574|D7L574_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,69.74,9e-18,seg,NULL,CUFF.36800.1
         (421 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G27090.1 | Symbols:  | glycine-rich protein | chr1:9404041-94...   330   9e-91
AT3G24690.1 | Symbols:  | BEST Arabidopsis thaliana protein matc...    87   3e-17

>AT1G27090.1 | Symbols:  | glycine-rich protein |
           chr1:9404041-9406098 REVERSE LENGTH=420
          Length = 420

 Score =  330 bits (847), Expect = 9e-91,   Method: Compositional matrix adjust.
 Identities = 173/303 (57%), Positives = 213/303 (70%), Gaps = 22/303 (7%)

Query: 1   MAATA---ANDGPVLNLINKRLRALRKKQNRITAMEESLAQGKPLNKEQEEVLRSKPSVL 57
           MAATA   A++GPV+ LINKRLRALRKK NRIT MEES++QGK LNKEQEEVLRSKP+V+
Sbjct: 1   MAATASSEASEGPVMGLINKRLRALRKKYNRITQMEESISQGKTLNKEQEEVLRSKPAVV 60

Query: 58  ALIDELEKLRQPXXXXXXXXXXXXXQ-NRGGTLPETTQQRPNST-------GSD---VVE 106
            LIDELEK+R P             Q NR  +   T  ++   T       G D    +E
Sbjct: 61  ILIDELEKIRAPLSAAVTEEISLATQLNRASSDQTTASEQKEVTDIPQEVSGGDDGAKLE 120

Query: 107 DILNLLYLGSLFEVKSQNDFTSTMLTRTLERGCCLTYDYVTDDATDLLGEKDLDSISDLR 166
           D++N LY GSLF+VKSQN+FTS MLTRT ER CCL+YDYVTDDATDLLG++DLDSIS L 
Sbjct: 121 DLVNFLYFGSLFDVKSQNEFTSIMLTRTHERSCCLSYDYVTDDATDLLGDRDLDSISQLW 180

Query: 167 GLLISRPADSSFSHKNALQRCIEHAKLWLSKAEQPIEPNAGVTYAGLRDKLNKIMSSEYF 226
            L++SRP DSS SHKNAL+RC+EHAKLWL+ +EQPIE N   +YA LR+KL KIM+S+YF
Sbjct: 181 SLMVSRPVDSSLSHKNALERCVEHAKLWLANSEQPIESNCNTSYAALREKLKKIMASDYF 240

Query: 227 TTTPEMKAPGEVXXXXXGSYGSFQVPVHDSPVHVEVEGSDSQPQEKDQGTINFQGHGSTD 286
           TTTPEMKAP +V     G+Y S+QVP       V+VE S    Q+++  + + +     +
Sbjct: 241 TTTPEMKAPVDV-AAAAGNYTSYQVP-------VDVEASGHYQQKEEDASNSKEVESVVN 292

Query: 287 DQS 289
           DQS
Sbjct: 293 DQS 295


>AT3G24690.1 | Symbols:  | BEST Arabidopsis thaliana protein match
          is: glycine-rich protein (TAIR:AT1G27090.1); Has 51
          Blast hits to 50 proteins in 15 species: Archae - 0;
          Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 47;
          Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
          | chr3:9020738-9021290 FORWARD LENGTH=158
          Length = 158

 Score = 86.7 bits (213), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 46/65 (70%), Positives = 52/65 (80%)

Query: 5  AANDGPVLNLINKRLRALRKKQNRITAMEESLAQGKPLNKEQEEVLRSKPSVLALIDELE 64
          AA +G +  LI+KRLR LRKK NRIT MEES++QGK LNKEQE+ LRSKP V ALIDEL 
Sbjct: 2  AAVEGQISALISKRLRTLRKKYNRITDMEESISQGKTLNKEQEDTLRSKPIVSALIDELV 61

Query: 65 KLRQP 69
          KLR P
Sbjct: 62 KLRIP 66