Miyakogusa Predicted Gene

Lj2g3v1338980.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1338980.1 Non Chatacterized Hit- tr|G7K9S6|G7K9S6_MEDTR
Putative uncharacterized protein OS=Medicago truncatul,75.8,0,
,CUFF.36770.1
         (543 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G17900.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   568   e-162

>AT3G17900.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN:
           cellular_component unknown; EXPRESSED IN: 23 plant
           structures; EXPRESSED DURING: 13 growth stages; Has 45
           Blast hits to 44 proteins in 14 species: Archae - 0;
           Bacteria - 0; Metazoa - 2; Fungi - 2; Plants - 39;
           Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
           | chr3:6128983-6133069 FORWARD LENGTH=838
          Length = 838

 Score =  568 bits (1463), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 312/529 (58%), Positives = 381/529 (72%), Gaps = 21/529 (3%)

Query: 25  IQVLLQVNVDVTSLKDPCIEILQFEKCQERMLSPDSQVDAVYTNQDPYAELLNWILPLDN 84
           I V LQV + V   K+P IEILQFEK Q++  +P++       ++DPY  LL W++PLDN
Sbjct: 305 IVVSLQVYI-VDCPKEPIIEILQFEKHQDQDQNPEN-------DKDPYGNLLKWLIPLDN 356

Query: 85  GKPLTRPLSPSHLTSNSGISSTSQRSNFPASSGSQLFSFGNFRSYSMSSLPQTTTTPNAP 144
                    P  +T +  ISST+ +    ++SGSQLFSFG+FRSYSMS+LP  T     P
Sbjct: 357 TISQQPRSLPPPITPSPSISSTAHKPAISSTSGSQLFSFGHFRSYSMSALPPNTAPVTGP 416

Query: 145 VKAVSSKPSFDLEDRDRNSSKKYL-WKKTGVEELLSFRGVSLERDRFSVCCGLEGIYTPG 203
           +K  SSKPSFD+ED D  S +     +K+G EELLSFRGV+LERDRFSV CGLEGI  PG
Sbjct: 417 IKTQSSKPSFDIEDWDSYSGQTVRNGQKSGTEELLSFRGVALERDRFSVRCGLEGICIPG 476

Query: 204 KKWRRKVEIIQPVEIHSFAADFNSEDILCVQIKNVAPAHAPDIVIFIDAINIVFEESAKN 263
           ++WRRK+EIIQP+EI+SFAAD N++D+LCVQIKNVAP HAPDIVI+IDAI IVFEE+ KN
Sbjct: 477 RRWRRKLEIIQPIEINSFAADCNTDDLLCVQIKNVAPTHAPDIVIYIDAITIVFEEAGKN 536

Query: 264 GTQSSLPLSCVEAGNDHSFPNLALRRGEEHSFILKPAPSTLKGLQVQDNR----SSQLS- 318
            + SS+P++C+EAGN+HS PNL LR+GEEHSFI+KPA S    L+    R    SS LS 
Sbjct: 537 ASPSSVPIACIEAGNEHSLPNLTLRKGEEHSFIVKPAFSVGSNLKPSAARNKLKSSSLSL 596

Query: 319 -KLQSGNKKPKFSIDQYAIMVSCRCNYTASRLFFKQPTSWRPRTSRDIMISVASERSGQS 377
             +    K    S DQYA+MVSCRCNYT SRLFFKQ T WRPR SRD+MISVASE SG+ 
Sbjct: 597 PTVNFERKGSGLSGDQYAVMVSCRCNYTESRLFFKQRTKWRPRVSRDLMISVASEMSGEP 656

Query: 378 RGAYGKYSQLPVQILTLQASNLTSEDLTLTVLAPASFTLPPSVASLNS-PATPMSPFIGL 436
            G +G+ SQLPVQILTLQASNLTSEDL+LTVLAPASFT PP+V SLNS P TP+SPF+G 
Sbjct: 657 CGPHGRASQLPVQILTLQASNLTSEDLSLTVLAPASFTSPPTVVSLNSTPTTPISPFLGF 716

Query: 437 ADFLGRVNGERGLGSTWRQRFTS--IMNKNEKQSYDGEAQAVSMSDDGIPISGPSCTHLW 494
           +DF  RV  E+   +  +Q+      +    + + +GE+   S   D +P SG  CTHLW
Sbjct: 717 SDFTERVQNEKRNTTVRKQQSLPPIPLETRTENNTNGES---SNPSDVVPKSGLGCTHLW 773

Query: 495 LQSRVPLGCIPPRSVATIKLELLPLTYGIITLDSLQIDVKEKGITFIPE 543
           LQSRVPLGC+P +S ATIKLELLPLT GIITLD+LQI  KEKG  +IPE
Sbjct: 774 LQSRVPLGCVPSKSTATIKLELLPLTDGIITLDTLQIHAKEKGRRYIPE 822