Miyakogusa Predicted Gene

Lj2g3v1279990.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1279990.1 CUFF.36684.1
         (210 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G14270.1 | Symbols:  | CAAX amino terminal protease family pr...   116   1e-26
AT1G14270.2 | Symbols:  | CAAX amino terminal protease family pr...    65   3e-11
AT1G14270.4 | Symbols:  | CAAX amino terminal protease family pr...    60   1e-09
AT1G14270.3 | Symbols:  | CAAX amino terminal protease family pr...    60   1e-09

>AT1G14270.1 | Symbols:  | CAAX amino terminal protease family
           protein | chr1:4875099-4877195 REVERSE LENGTH=353
          Length = 353

 Score =  116 bits (290), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 53/116 (45%), Positives = 75/116 (64%), Gaps = 4/116 (3%)

Query: 61  PKSKTKLQAHQRDFGPDWPILRRWEVPWQWQTFSLTSIACALSLVLTVWLEVNALPSLEV 120
           P  + KLQ    +    WPIL+RWEVPW WQT SLTS ACALS VLT   E+  +P L +
Sbjct: 80  PGGEGKLQGGSSE----WPILQRWEVPWGWQTVSLTSFACALSFVLTGLTEMAVIPFLGI 135

Query: 121 EGDELSSDEEAVIFLVNHSFATAIVLQVLYGITNMYQPLPQDFFKYDWREPFNLQK 176
           + ++L+ D++A I  ++    TA+VL V++ +   + PLP+D  +YD R+P NLQK
Sbjct: 136 DVEKLTLDDKAEILFLDQGLTTAVVLAVIFTVAKTFDPLPEDILRYDLRQPVNLQK 191


>AT1G14270.2 | Symbols:  | CAAX amino terminal protease family
           protein | chr1:4875099-4876503 REVERSE LENGTH=247
          Length = 247

 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 47/74 (63%)

Query: 103 SLVLTVWLEVNALPSLEVEGDELSSDEEAVIFLVNHSFATAIVLQVLYGITNMYQPLPQD 162
           S VLT   E+  +P L ++ ++L+ D++A I  ++    TA+VL V++ +   + PLP+D
Sbjct: 12  SFVLTGLTEMAVIPFLGIDVEKLTLDDKAEILFLDQGLTTAVVLAVIFTVAKTFDPLPED 71

Query: 163 FFKYDWREPFNLQK 176
             +YD R+P NLQK
Sbjct: 72  ILRYDLRQPVNLQK 85


>AT1G14270.4 | Symbols:  | CAAX amino terminal protease family
           protein | chr1:4875099-4876443 REVERSE LENGTH=227
          Length = 227

 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 41/62 (66%)

Query: 115 LPSLEVEGDELSSDEEAVIFLVNHSFATAIVLQVLYGITNMYQPLPQDFFKYDWREPFNL 174
           +P L ++ ++L+ D++A I  ++    TA+VL V++ +   + PLP+D  +YD R+P NL
Sbjct: 4   IPFLGIDVEKLTLDDKAEILFLDQGLTTAVVLAVIFTVAKTFDPLPEDILRYDLRQPVNL 63

Query: 175 QK 176
           QK
Sbjct: 64  QK 65


>AT1G14270.3 | Symbols:  | CAAX amino terminal protease family
           protein | chr1:4875099-4876443 REVERSE LENGTH=227
          Length = 227

 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 41/62 (66%)

Query: 115 LPSLEVEGDELSSDEEAVIFLVNHSFATAIVLQVLYGITNMYQPLPQDFFKYDWREPFNL 174
           +P L ++ ++L+ D++A I  ++    TA+VL V++ +   + PLP+D  +YD R+P NL
Sbjct: 4   IPFLGIDVEKLTLDDKAEILFLDQGLTTAVVLAVIFTVAKTFDPLPEDILRYDLRQPVNL 63

Query: 175 QK 176
           QK
Sbjct: 64  QK 65