Miyakogusa Predicted Gene

Lj2g3v1277770.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1277770.1 tr|A9RZT4|A9RZT4_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_122100,38.17,0.000000000000001,Translational machinery
components,NULL; Ribosomal_L18p,Ribosomal protein L18/L5; no
description,NUL,CUFF.36666.1
         (164 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G14205.1 | Symbols:  | Ribosomal L18p/L5e family protein | ch...   203   4e-53
AT1G48350.1 | Symbols:  | Ribosomal L18p/L5e family protein | ch...    82   2e-16

>AT1G14205.1 | Symbols:  | Ribosomal L18p/L5e family protein |
           chr1:4855582-4856762 FORWARD LENGTH=165
          Length = 165

 Score =  203 bits (517), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 101/164 (61%), Positives = 120/164 (73%), Gaps = 2/164 (1%)

Query: 1   MAQLNA-PALHFKSSSVFGINPKSFIYFQGQSRCL-IKKPLVVEARANTRTESPKIRNRR 58
           MA L +   + F+ S + G   K +  F  +   + + KP V+EAR NTR ESPK RNRR
Sbjct: 1   MAALTSLSTVQFRVSDILGTRLKPYPQFPIRITTMSVVKPFVIEARGNTRVESPKTRNRR 60

Query: 59  MQKKFNGTARHPRLSVFCSDKQLYAMLVDDKNKKCLFYGSTLHKSFRENPPCSTVEAAQR 118
            +KKF GT   PRLSVFCSDKQLYAMLVDD NKKCLFY STL KS R +PPC+ +EAA+R
Sbjct: 61  SRKKFTGTQTKPRLSVFCSDKQLYAMLVDDFNKKCLFYASTLQKSIRGDPPCTVIEAAKR 120

Query: 119 VGEALVKACTDLKINEISSYDRNGFGRGQRLDAFEIAISSYGFL 162
           VGE L+KA  DLKINEISSYDRNG  RG+R+ AFEIAI+ +GFL
Sbjct: 121 VGEELIKASIDLKINEISSYDRNGNKRGERMQAFEIAIAQHGFL 164


>AT1G48350.1 | Symbols:  | Ribosomal L18p/L5e family protein |
           chr1:17867269-17868215 FORWARD LENGTH=170
          Length = 170

 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 51/155 (32%), Positives = 77/155 (49%), Gaps = 14/155 (9%)

Query: 20  NPKSFIYFQGQSRCLIKKP----------LVVEARANTRTESPKIRNRRMQKKFNGTARH 69
           N  +F+    Q R +  KP          +VVEA+  T +E    R+ R++KK NGT   
Sbjct: 15  NRSAFLGNGLQHRAVFLKPWSSSSLQSRSMVVEAKTKTSSEDRIARHSRIRKKVNGTTER 74

Query: 70  PRLSVFCSDKQLYAMLVDDKNKKCLFYGSTLHKSFREN---PPCSTVEAAQRVGEALVKA 126
           PRL VF S+K LY  ++DD     L   ST  K   E        T+E A++VGE + K+
Sbjct: 75  PRLCVFRSNKHLYVQVIDDTKMHTLASASTKQKPISEEFDYTSGPTIEVAKKVGEVIAKS 134

Query: 127 CTDLKINEISSYDRNGFGRGQRLDAFEIAISSYGF 161
           C +  I ++ ++DR G+    R++A   A   +G 
Sbjct: 135 CLEKGITKV-AFDRGGYPYHGRIEALAAAAREHGL 168