Miyakogusa Predicted Gene
- Lj2g3v1277640.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v1277640.1 Non Chatacterized Hit- tr|A3A8B8|A3A8B8_ORYSJ
Putative uncharacterized protein OS=Oryza sativa
subsp,62.96,0.000000000001,Oxygen-evolving enhancer protein
3,,PsbQ-like domain; no description,NULL; seg,NULL;
PsbQ,Photosyste,CUFF.36655.1
(204 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G14150.1 | Symbols: PQL1, PQL2 | PsbQ-like 2 | chr1:4839885-4... 197 6e-51
AT1G14150.2 | Symbols: PQL1, PQL2 | PsbQ-like 2 | chr1:4839885-4... 152 2e-37
AT4G21280.1 | Symbols: PSBQ, PSBQA, PSBQ-1 | photosystem II subu... 57 8e-09
AT4G21280.2 | Symbols: PSBQ, PSBQA, PSBQ-1 | photosystem II subu... 57 9e-09
AT3G01440.1 | Symbols: PQL1, PQL2 | PsbQ-like 1 | chr3:168478-16... 56 1e-08
AT4G05180.1 | Symbols: PSBQ, PSBQ-2, PSII-Q | photosystem II sub... 56 2e-08
>AT1G14150.1 | Symbols: PQL1, PQL2 | PsbQ-like 2 |
chr1:4839885-4840632 FORWARD LENGTH=190
Length = 190
Score = 197 bits (500), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 96/173 (55%), Positives = 121/173 (69%), Gaps = 13/173 (7%)
Query: 37 PFS-----AEHNNDTTSRRKLISTFLTTSTXXXXXXXXXXXXXXXXXXXEKWGTRSFLKE 91
PFS E D +RR+ +++ +T + EKWGTRSF+KE
Sbjct: 26 PFSVVCCTGEPQQDIFTRRRTLTSLITFTVIGGATSSALAQ--------EKWGTRSFIKE 77
Query: 92 HFFEPGLSPEDAVERIKQTAEGLHSMRDMLESMSWRYVMFYIRLKQSYLDQDLKNAITTL 151
+F PGLSPEDA RIKQTAEGL MR+ML+ MSWRYV+FYIRLKQ+YL QDL NA+ L
Sbjct: 78 KYFMPGLSPEDAAARIKQTAEGLRDMREMLDHMSWRYVIFYIRLKQAYLSQDLTNAMNIL 137
Query: 152 PENRKKEYVKTANDLVDNMAELDRHVRSPKVYESYLYYERLLKSIDELVAILA 204
PE+R+ +YV+ AN+LV+NM+ELD +VR+PKVYESYLYYE+ LKSID +V LA
Sbjct: 138 PESRRNDYVQAANELVENMSELDFYVRTPKVYESYLYYEKTLKSIDNVVEFLA 190
>AT1G14150.2 | Symbols: PQL1, PQL2 | PsbQ-like 2 |
chr1:4839885-4840373 FORWARD LENGTH=162
Length = 162
Score = 152 bits (383), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 73/142 (51%), Positives = 95/142 (66%), Gaps = 13/142 (9%)
Query: 37 PFS-----AEHNNDTTSRRKLISTFLTTSTXXXXXXXXXXXXXXXXXXXEKWGTRSFLKE 91
PFS E D +RR+ +++ +T + EKWGTRSF+KE
Sbjct: 26 PFSVVCCTGEPQQDIFTRRRTLTSLITFTVIGGATSSALAQ--------EKWGTRSFIKE 77
Query: 92 HFFEPGLSPEDAVERIKQTAEGLHSMRDMLESMSWRYVMFYIRLKQSYLDQDLKNAITTL 151
+F PGLSPEDA RIKQTAEGL MR+ML+ MSWRYV+FYIRLKQ+YL QDL NA+ L
Sbjct: 78 KYFMPGLSPEDAAARIKQTAEGLRDMREMLDHMSWRYVIFYIRLKQAYLSQDLTNAMNIL 137
Query: 152 PENRKKEYVKTANDLVDNMAEL 173
PE+R+ +YV+ AN+LV+NM+E+
Sbjct: 138 PESRRNDYVQAANELVENMSEV 159
>AT4G21280.1 | Symbols: PSBQ, PSBQA, PSBQ-1 | photosystem II subunit
QA | chr4:11334446-11335587 FORWARD LENGTH=223
Length = 223
Score = 57.0 bits (136), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 61/116 (52%)
Query: 89 LKEHFFEPGLSPEDAVERIKQTAEGLHSMRDMLESMSWRYVMFYIRLKQSYLDQDLKNAI 148
LK+ F+ L P +A R K++A+ + +++ +++ +W YV +R K SYL DL I
Sbjct: 108 LKDRFYLQPLPPTEAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRYDLNTII 167
Query: 149 TTLPENRKKEYVKTANDLVDNMAELDRHVRSPKVYESYLYYERLLKSIDELVAILA 204
++ P++ KK L D + LD + ++ YY + +++E++A L
Sbjct: 168 SSKPKDEKKSLKDLTTKLFDTIDNLDYAAKKKSPSQAEKYYAETVSALNEVLAKLG 223
>AT4G21280.2 | Symbols: PSBQ, PSBQA, PSBQ-1 | photosystem II subunit
QA | chr4:11334446-11335587 FORWARD LENGTH=224
Length = 224
Score = 57.0 bits (136), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 61/116 (52%)
Query: 89 LKEHFFEPGLSPEDAVERIKQTAEGLHSMRDMLESMSWRYVMFYIRLKQSYLDQDLKNAI 148
LK+ F+ L P +A R K++A+ + +++ +++ +W YV +R K SYL DL I
Sbjct: 109 LKDRFYLQPLPPTEAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRYDLNTII 168
Query: 149 TTLPENRKKEYVKTANDLVDNMAELDRHVRSPKVYESYLYYERLLKSIDELVAILA 204
++ P++ KK L D + LD + ++ YY + +++E++A L
Sbjct: 169 SSKPKDEKKSLKDLTTKLFDTIDNLDYAAKKKSPSQAEKYYAETVSALNEVLAKLG 224
>AT3G01440.1 | Symbols: PQL1, PQL2 | PsbQ-like 1 |
chr3:168478-169407 FORWARD LENGTH=220
Length = 220
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 57/110 (51%)
Query: 81 EKWGTRSFLKEHFFEPGLSPEDAVERIKQTAEGLHSMRDMLESMSWRYVMFYIRLKQSYL 140
EK GTR+F+K+ + + + + R+K+ A L +M D++ + YV Y+RLK ++L
Sbjct: 97 EKTGTRTFIKKGVYVADIGTKGRMYRVKKNAFDLLAMEDLIGPDTLNYVKKYLRLKSTFL 156
Query: 141 DQDLKNAITTLPENRKKEYVKTANDLVDNMAELDRHVRSPKVYESYLYYE 190
D N I+ K+ AN L DN +L+ ++ + E+ Y+
Sbjct: 157 FYDFDNLISAAASEDKQPLTDLANRLFDNFEKLEDAAKTKNLAETESCYK 206
>AT4G05180.1 | Symbols: PSBQ, PSBQ-2, PSII-Q | photosystem II
subunit Q-2 | chr4:2672093-2673170 REVERSE LENGTH=230
Length = 230
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 58/116 (50%)
Query: 89 LKEHFFEPGLSPEDAVERIKQTAEGLHSMRDMLESMSWRYVMFYIRLKQSYLDQDLKNAI 148
LK+ F+ LSP +A R K +A+ + +++ ++ +W YV +RL+ SYL DL I
Sbjct: 115 LKDRFYIQPLSPTEAAARAKDSAKEIINVKSFIDKKAWPYVQNDLRLRASYLRYDLNTVI 174
Query: 149 TTLPENRKKEYVKTANDLVDNMAELDRHVRSPKVYESYLYYERLLKSIDELVAILA 204
+ P+ K+ L + LD RS ++ YY + S++ ++A L
Sbjct: 175 SAKPKEEKQSLKDLTAKLFQTIDNLDYAARSKSSPDAEKYYSETVSSLNNVLAKLG 230