Miyakogusa Predicted Gene

Lj2g3v1277620.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1277620.1 Non Chatacterized Hit- tr|I3S5Q8|I3S5Q8_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,97.87,2e-18,
,CUFF.36673.1
         (47 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G18720.1 | Symbols:  | Protein of unknown function (DUF962) |...    66   4e-12
AT1G74440.1 | Symbols:  | Protein of unknown function (DUF962) |...    63   4e-11

>AT1G18720.1 | Symbols:  | Protein of unknown function (DUF962) |
           chr1:6458020-6459658 REVERSE LENGTH=206
          Length = 206

 Score = 66.2 bits (160), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 28/44 (63%), Positives = 37/44 (84%)

Query: 1   MAPFFVLLEALQTLFGYEPYPGFHSIVQAEIEANINEWQESKQK 44
           MAPFFVLLE LQ++FGYEPYPGF + V A++E++I E++  KQK
Sbjct: 158 MAPFFVLLEVLQSVFGYEPYPGFQARVNAKVESDIKEYRAKKQK 201


>AT1G74440.1 | Symbols:  | Protein of unknown function (DUF962) |
           chr1:27979208-27980371 REVERSE LENGTH=208
          Length = 208

 Score = 63.2 bits (152), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 26/40 (65%), Positives = 33/40 (82%)

Query: 1   MAPFFVLLEALQTLFGYEPYPGFHSIVQAEIEANINEWQE 40
           M PFFVLLE LQ++FGYEPYPGF + V ++IE+ I EW+E
Sbjct: 158 MGPFFVLLEVLQSVFGYEPYPGFKARVDSKIESGIKEWRE 197