Miyakogusa Predicted Gene

Lj2g3v1277490.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1277490.2 Non Chatacterized Hit- tr|I1J5U5|I1J5U5_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.56502 PE,88.74,0,Helical
region found in SNAREs,Target SNARE coiled-coil domain; SNARE PROTEIN,
PUTATIVE,NULL; VESICL,CUFF.36658.2
         (222 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G26670.1 | Symbols: VTI12, ATVTI12, VTI1B | Vesicle transport...   267   4e-72
AT5G39510.1 | Symbols: VTI11, ATVTI1A, ATVTI11, ZIG, SGR4, VTI1A...   234   2e-62
AT3G29100.1 | Symbols: VTI13, ATVTI13 | vesicle transport V-snar...   160   5e-40
AT3G29100.2 | Symbols: VTI13 | vesicle transport V-snare 13 | ch...   157   7e-39
AT5G39630.1 | Symbols:  | Vesicle transport v-SNARE family prote...   122   1e-28

>AT1G26670.1 | Symbols: VTI12, ATVTI12, VTI1B | Vesicle transport
           v-SNARE family protein | chr1:9216103-9217793 FORWARD
           LENGTH=222
          Length = 222

 Score =  267 bits (682), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 134/222 (60%), Positives = 165/222 (74%)

Query: 1   MSEVFEGYERQYCDLSANLSRKCSSASLVSDLEQKQQKLSEIKAGLDDADVLIRKMDLEA 60
           MS+VFEGYERQYC+LS NLSRKC SAS++S+ E+K+ K++EIK+G+D+ADVLIRKMDLEA
Sbjct: 1   MSDVFEGYERQYCELSTNLSRKCHSASVLSNGEEKKGKIAEIKSGIDEADVLIRKMDLEA 60

Query: 61  RSLQPSVKAMLLAKLREYKSDLTKLKKEFKRLTSPSADQAAREDLLEAGMADAHLASADQ 120
           RSLQPS KA+ L+KLREYKSDL +LKKEFKR++S  A  ++RE+L+E+GMAD H  SADQ
Sbjct: 61  RSLQPSAKAVCLSKLREYKSDLNQLKKEFKRVSSADAKPSSREELMESGMADLHAVSADQ 120

Query: 121 RERLTMSVERINDSXXXXXXXXXXXXXXXXXGVLILQDLHQQRETLLSSHKRLHGVDDAI 180
           R RL MSVER++ S                 G+ I+QDL QQR+TLL +H +LHGVDDAI
Sbjct: 121 RGRLAMSVERLDQSSDRIRESRRLMLETEEVGISIVQDLSQQRQTLLHAHNKLHGVDDAI 180

Query: 181 DKSKKVLTTMSRRITRHKWXXXXXXXXXXXXXXXXXFYKLSH 222
           DKSKKVLT MSRR+TR+KW                  YKLSH
Sbjct: 181 DKSKKVLTAMSRRMTRNKWIITSVIVALVLAIILIISYKLSH 222


>AT5G39510.1 | Symbols: VTI11, ATVTI1A, ATVTI11, ZIG, SGR4, VTI1A,
           ZIG1 | Vesicle transport v-SNARE family protein |
           chr5:15822035-15823591 FORWARD LENGTH=221
          Length = 221

 Score =  234 bits (598), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 121/221 (54%), Positives = 155/221 (70%), Gaps = 1/221 (0%)

Query: 1   MSEVFEGYERQYCDLSANLSRKCSSASLVSDLEQKQQKLSEIKAGLDDADVLIRKMDLEA 60
           MS+VF+GYERQYC+LSA+LS+KCSSA +  D EQK+QKLSEIK+GL++A+VLIRKMDLEA
Sbjct: 1   MSDVFDGYERQYCELSASLSKKCSSA-ISLDGEQKKQKLSEIKSGLENAEVLIRKMDLEA 59

Query: 61  RSLQPSVKAMLLAKLREYKSDLTKLKKEFKRLTSPSADQAAREDLLEAGMADAHLASADQ 120
           R+L P++K+ LL KLRE+KSDL   K E KR+TS   + AAR++LLEAGMAD   ASADQ
Sbjct: 60  RTLPPNLKSSLLVKLREFKSDLNNFKTEVKRITSGQLNAAARDELLEAGMADTKTASADQ 119

Query: 121 RERLTMSVERINDSXXXXXXXXXXXXXXXXXGVLILQDLHQQRETLLSSHKRLHGVDDAI 180
           R RL MS ER+  +                 GV ILQDLH QR++LL +H+ LHGVDD I
Sbjct: 120 RARLMMSTERLGRTTDRVKDSRRTMMETEEIGVSILQDLHGQRQSLLRAHETLHGVDDNI 179

Query: 181 DKSKKVLTTMSRRITRHKWXXXXXXXXXXXXXXXXXFYKLS 221
            KSKK+LT M+RR+ ++KW                 ++KL+
Sbjct: 180 GKSKKILTDMTRRMNKNKWTIGAIIIALIAAIFIILYFKLT 220


>AT3G29100.1 | Symbols: VTI13, ATVTI13 | vesicle transport V-snare
           13 | chr3:11075916-11076581 REVERSE LENGTH=195
          Length = 195

 Score =  160 bits (406), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 82/169 (48%), Positives = 107/169 (63%)

Query: 53  IRKMDLEARSLQPSVKAMLLAKLREYKSDLTKLKKEFKRLTSPSADQAAREDLLEAGMAD 112
           ++KMDLEAR+L P+VK+ LL KLREYKSDL   K E KR+TS + +  AR++LLEAGMAD
Sbjct: 26  VKKMDLEARNLPPNVKSSLLVKLREYKSDLNNFKTEVKRITSGNLNATARDELLEAGMAD 85

Query: 113 AHLASADQRERLTMSVERINDSXXXXXXXXXXXXXXXXXGVLILQDLHQQRETLLSSHKR 172
              ASADQR RL MS + +  +                 GV ILQDLH QR++LL +H+ 
Sbjct: 86  TLTASADQRSRLMMSTDHLGRTTDRIKDSRRTILETEELGVSILQDLHGQRQSLLRAHET 145

Query: 173 LHGVDDAIDKSKKVLTTMSRRITRHKWXXXXXXXXXXXXXXXXXFYKLS 221
           LHGVDD + KSKK+LTTM+RR+ R+KW                 ++KL+
Sbjct: 146 LHGVDDNVGKSKKILTTMTRRMNRNKWTIGAIITVLVLAIIFILYFKLT 194


>AT3G29100.2 | Symbols: VTI13 | vesicle transport V-snare 13 |
           chr3:11075916-11076497 REVERSE LENGTH=167
          Length = 167

 Score =  157 bits (396), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 81/166 (48%), Positives = 104/166 (62%)

Query: 56  MDLEARSLQPSVKAMLLAKLREYKSDLTKLKKEFKRLTSPSADQAAREDLLEAGMADAHL 115
           MDLEAR+L P+VK+ LL KLREYKSDL   K E KR+TS + +  AR++LLEAGMAD   
Sbjct: 1   MDLEARNLPPNVKSSLLVKLREYKSDLNNFKTEVKRITSGNLNATARDELLEAGMADTLT 60

Query: 116 ASADQRERLTMSVERINDSXXXXXXXXXXXXXXXXXGVLILQDLHQQRETLLSSHKRLHG 175
           ASADQR RL MS + +  +                 GV ILQDLH QR++LL +H+ LHG
Sbjct: 61  ASADQRSRLMMSTDHLGRTTDRIKDSRRTILETEELGVSILQDLHGQRQSLLRAHETLHG 120

Query: 176 VDDAIDKSKKVLTTMSRRITRHKWXXXXXXXXXXXXXXXXXFYKLS 221
           VDD + KSKK+LTTM+RR+ R+KW                 ++KL+
Sbjct: 121 VDDNVGKSKKILTTMTRRMNRNKWTIGAIITVLVLAIIFILYFKLT 166


>AT5G39630.1 | Symbols:  | Vesicle transport v-SNARE family protein
           | chr5:15868262-15869714 FORWARD LENGTH=207
          Length = 207

 Score =  122 bits (307), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 76/190 (40%), Positives = 114/190 (60%), Gaps = 5/190 (2%)

Query: 1   MSEVFEGYERQYCDLSANLSRKCSSASLVSDLEQKQQKLSEIKAGLDDADVLIRKMDLEA 60
           MS VF  Y++QY +LS NLS+KCS A  +   E+K+ KLSEI   L++A+ LI KMD  A
Sbjct: 1   MSNVFHEYDQQYSELSINLSKKCSLAFSLKGGEKKE-KLSEITYDLENAEKLISKMDHAA 59

Query: 61  RSLQPSVKAMLLAKLREYKSDLTKLKKEFKRLTSPSADQAAREDLLEAGMADAHLASADQ 120
            +L P++K++LL KL+E KS L +L+ E KR TS +     RE++LEA  AD     ADQ
Sbjct: 60  SNLPPNIKSILLEKLKESKSSLKRLRNEIKRNTSENLKVTTREEVLEAEKADL----ADQ 115

Query: 121 RERLTMSVERINDSXXXXXXXXXXXXXXXXXGVLILQDLHQQRETLLSSHKRLHGVDDAI 180
           R RL  S E +  +                 G+ IL++L +Q+E+L +S   LH +DD +
Sbjct: 116 RSRLMKSTEGLVRTREMIKDSQRKLLETENIGISILENLQRQKESLQNSQAMLHEIDDTV 175

Query: 181 DKSKKVLTTM 190
            +S+ ++ ++
Sbjct: 176 KESRSIVRSI 185