Miyakogusa Predicted Gene

Lj2g3v1277360.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1277360.1 tr|G7IVG3|G7IVG3_MEDTR F-box/kelch-repeat protein
OS=Medicago truncatula GN=MTR_3g010620 PE=4
SV=1,55.36,0.000000001,F-box domain,F-box domain, cyclin-like;
F-box,F-box domain, cyclin-like; no description,NULL,CUFF.36750.1
         (65 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G23880.1 | Symbols:  | F-box and associated interaction domai...    47   2e-06
AT2G41473.1 | Symbols:  | F-box family protein | chr2:17294453-1...    45   7e-06
AT1G47790.1 | Symbols:  | F-box and associated interaction domai...    45   9e-06

>AT3G23880.1 | Symbols:  | F-box and associated interaction
          domains-containing protein | chr3:8622061-8623155
          REVERSE LENGTH=364
          Length = 364

 Score = 47.0 bits (110), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 20/32 (62%), Positives = 25/32 (78%)

Query: 1  MCRLPVKPVLRFRCVCKSWKSLISDPRFAKKH 32
          + RLPVK + RF+CVC SW+SLIS+  FA KH
Sbjct: 23 LLRLPVKSLTRFKCVCSSWRSLISETLFALKH 54


>AT2G41473.1 | Symbols:  | F-box family protein |
          chr2:17294453-17294728 REVERSE LENGTH=91
          Length = 91

 Score = 45.4 bits (106), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 20/37 (54%), Positives = 27/37 (72%)

Query: 1  MCRLPVKPVLRFRCVCKSWKSLISDPRFAKKHLRCSP 37
          + ++PVK +LRFRCVCKSW+SL  D RF + H   +P
Sbjct: 13 LAKVPVKYLLRFRCVCKSWRSLFQDERFIRMHTTHAP 49


>AT1G47790.1 | Symbols:  | F-box and associated interaction
          domains-containing protein | chr1:17600004-17601173
          REVERSE LENGTH=389
          Length = 389

 Score = 45.1 bits (105), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 4/55 (7%)

Query: 1  MCRLPVKPVLRFRCVCKSWKSLISDPRFAKKHLRCSPKTDFTRHHLILHYNTSSR 55
          + RLPVK V+RFRCV K W S+I+DP F K +   S     TR  L+  +  S +
Sbjct: 34 LLRLPVKSVVRFRCVSKLWSSIITDPYFIKTYETQSS----TRQSLLFCFKQSDK 84