Miyakogusa Predicted Gene

Lj2g3v1267210.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1267210.2 CUFF.36630.2
         (335 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G03390.1 | Symbols:  | uvrB/uvrC motif-containing protein | c...   418   e-117
AT2G03390.2 | Symbols:  | uvrB/uvrC motif-containing protein | c...   325   3e-89

>AT2G03390.1 | Symbols:  | uvrB/uvrC motif-containing protein |
           chr2:1030635-1032354 REVERSE LENGTH=330
          Length = 330

 Score =  418 bits (1074), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 203/341 (59%), Positives = 246/341 (72%), Gaps = 18/341 (5%)

Query: 1   MVQGMSLSTMVTCGKSRPCGSSLNWMTPFEPFKRSHITSTTGKHLVWNQCVQSLFLMGYP 60
           MVQ  SLST+  CG  +                R+ + S     L+ ++CV   FL   P
Sbjct: 1   MVQSQSLSTLTICGSVK-----------VSSLLRNRLNSVKASSLIGDRCVSCQFLRKSP 49

Query: 61  Y-------VSRRGDFKAEAAWMFRGGGEQELDASVEHSESANEDILMFFFQLDLATRVQY 113
                   + +R   + EA W F+GGGEQ LD S E SESANEDIL+FFFQLDLATRVQY
Sbjct: 50  SFRSHWKSLKQRNLLRVEARWPFQGGGEQGLDPSSERSESANEDILIFFFQLDLATRVQY 109

Query: 114 ALNMEQYDIAQQLRNKLSEVEEDIIKQQQSKRGLSSKGEAQDKGLSIIRLRSDLQSAIEK 173
           A+N+EQYDIAQQLR KL+EVEE+ I+ Q+ KRG S+K EAQDKG+SIIRLR+DLQ+AI+ 
Sbjct: 110 AMNLEQYDIAQQLREKLTEVEEESIRLQEGKRGSSAKSEAQDKGISIIRLRADLQNAIDS 169

Query: 174 EDYALAAELRDKIXXXXXXXXXXXXXXXXHENAQYAFRLGQKVRHKIFGYTAVICGMDPV 233
           EDY LAA+LRD+I                 E A+YAFRLGQK+RHK FGY AV+CGMDP+
Sbjct: 170 EDYGLAAKLRDEISKLEAESLAVSAKALAFEKAEYAFRLGQKLRHKTFGYRAVVCGMDPI 229

Query: 234 CSESSSWMENAEIKKLSRGSTQPFYQILVDVRAEPNLLVAYVAEENLLTPDKPDMGRFDH 293
           CSESSSWME AE++KL RGS QPFYQ+LVDVR  P+LLVAYVAE+NLL P+KPD  RFDH
Sbjct: 230 CSESSSWMEAAEVEKLPRGSNQPFYQVLVDVRTHPDLLVAYVAEDNLLAPEKPDKERFDH 289

Query: 294 PYISFLFYGVDSAGDFIPIKQLREKYNKPRHELPTDPPNDE 334
           PYISFL+YG D+AGDFIP+KQLREKYN+PRHE+P D  +++
Sbjct: 290 PYISFLYYGADTAGDFIPVKQLREKYNRPRHEVPFDSQDED 330


>AT2G03390.2 | Symbols:  | uvrB/uvrC motif-containing protein |
           chr2:1030635-1031918 REVERSE LENGTH=220
          Length = 220

 Score =  325 bits (833), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 149/220 (67%), Positives = 180/220 (81%)

Query: 115 LNMEQYDIAQQLRNKLSEVEEDIIKQQQSKRGLSSKGEAQDKGLSIIRLRSDLQSAIEKE 174
           +N+EQYDIAQQLR KL+EVEE+ I+ Q+ KRG S+K EAQDKG+SIIRLR+DLQ+AI+ E
Sbjct: 1   MNLEQYDIAQQLREKLTEVEEESIRLQEGKRGSSAKSEAQDKGISIIRLRADLQNAIDSE 60

Query: 175 DYALAAELRDKIXXXXXXXXXXXXXXXXHENAQYAFRLGQKVRHKIFGYTAVICGMDPVC 234
           DY LAA+LRD+I                 E A+YAFRLGQK+RHK FGY AV+CGMDP+C
Sbjct: 61  DYGLAAKLRDEISKLEAESLAVSAKALAFEKAEYAFRLGQKLRHKTFGYRAVVCGMDPIC 120

Query: 235 SESSSWMENAEIKKLSRGSTQPFYQILVDVRAEPNLLVAYVAEENLLTPDKPDMGRFDHP 294
           SESSSWME AE++KL RGS QPFYQ+LVDVR  P+LLVAYVAE+NLL P+KPD  RFDHP
Sbjct: 121 SESSSWMEAAEVEKLPRGSNQPFYQVLVDVRTHPDLLVAYVAEDNLLAPEKPDKERFDHP 180

Query: 295 YISFLFYGVDSAGDFIPIKQLREKYNKPRHELPTDPPNDE 334
           YISFL+YG D+AGDFIP+KQLREKYN+PRHE+P D  +++
Sbjct: 181 YISFLYYGADTAGDFIPVKQLREKYNRPRHEVPFDSQDED 220