Miyakogusa Predicted Gene
- Lj2g3v1266110.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj2g3v1266110.1 Non Chatacterized Hit- tr|K4ABX6|K4ABX6_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si036383,45.13,3e-19,seg,NULL; Remorin_C,Remorin, C-terminal;
coiled-coil,NULL,CUFF.36615.1
(157 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G13920.1 | Symbols: | Remorin family protein | chr1:4758188-... 109 7e-25
AT1G69325.1 | Symbols: | Remorin family protein | chr1:26063205... 84 4e-17
AT5G61280.1 | Symbols: | Remorin family protein | chr5:24643625... 84 5e-17
AT1G67590.1 | Symbols: | Remorin family protein | chr1:25333137... 60 4e-10
AT5G23750.2 | Symbols: | Remorin family protein | chr5:8010004-... 54 3e-08
AT5G23750.1 | Symbols: | Remorin family protein | chr5:8010004-... 54 4e-08
AT3G61260.1 | Symbols: | Remorin family protein | chr3:22675403... 54 6e-08
AT2G02170.2 | Symbols: | Remorin family protein | chr2:556595-5... 51 3e-07
AT2G02170.1 | Symbols: | Remorin family protein | chr2:556595-5... 51 3e-07
AT2G41870.1 | Symbols: | Remorin family protein | chr2:17471119... 51 4e-07
AT3G57540.1 | Symbols: | Remorin family protein | chr3:21301623... 50 7e-07
AT3G48940.1 | Symbols: | Remorin family protein | chr3:18142863... 50 8e-07
AT2G45820.1 | Symbols: | Remorin family protein | chr2:18863147... 47 5e-06
>AT1G13920.1 | Symbols: | Remorin family protein |
chr1:4758188-4759754 FORWARD LENGTH=345
Length = 345
Score = 109 bits (273), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 56/109 (51%), Positives = 77/109 (70%), Gaps = 1/109 (0%)
Query: 50 ETKADEWERTELDKIRQRYEKLKETIDSWENKKKMKARHKL-VKQESELERRRFKALQSF 108
++ AD WE+ EL KI+ RYEKL ID WE KK+ KAR KL + ++SELE+RR + LQ F
Sbjct: 237 DSTADAWEKAELSKIKARYEKLNRKIDLWEAKKREKARRKLDISEQSELEQRRKRGLQRF 296
Query: 109 QNKMTNVDKIAEGARTKAVENRKNEELKTKEKANAIRTTGKLPGICFCF 157
+ +++IA GAR +A ++R+++E K KEKA IR+TGKLPG CF
Sbjct: 297 REDTEYIEQIAAGARAQAEKDRQSKEFKVKEKAGVIRSTGKLPGNACCF 345
>AT1G69325.1 | Symbols: | Remorin family protein |
chr1:26063205-26063736 FORWARD LENGTH=120
Length = 120
Score = 84.0 bits (206), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 49/111 (44%), Positives = 70/111 (63%)
Query: 45 RPSTQETKADEWERTELDKIRQRYEKLKETIDSWENKKKMKARHKLVKQESELERRRFKA 104
+P D+W+ TE+ K R++YEKL E I SWE+KK+ KA+ KL + E +E+ + KA
Sbjct: 10 KPEHMAAVVDQWKETEISKSRKKYEKLSEKIVSWEDKKRKKAKRKLHRTERSVEKTKLKA 69
Query: 105 LQSFQNKMTNVDKIAEGARTKAVENRKNEELKTKEKANAIRTTGKLPGICF 155
Q F+++ ++ I AR A E+R EELK KEKAN +RTTG+ P C
Sbjct: 70 TQRFRDENERIEIIVASARAHAYESRIKEELKVKEKANLMRTTGRKPSTCL 120
>AT5G61280.1 | Symbols: | Remorin family protein |
chr5:24643625-24644910 REVERSE LENGTH=263
Length = 263
Score = 83.6 bits (205), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 42/111 (37%), Positives = 72/111 (64%)
Query: 47 STQETKADEWERTELDKIRQRYEKLKETIDSWENKKKMKARHKLVKQESELERRRFKALQ 106
++ +KAD WE++++ KIR RYEK+K I WEN++K+ A + K++SELE+R+ Q
Sbjct: 150 ASASSKADSWEKSQIKKIRLRYEKMKADIVGWENERKLAATLLMEKRKSELEKRKGINNQ 209
Query: 107 SFQNKMTNVDKIAEGARTKAVENRKNEELKTKEKANAIRTTGKLPGICFCF 157
+++K+ + IA+GA+ + E R+++E + K + TGK+P FCF
Sbjct: 210 HYKSKLARIQLIADGAKKQLEEKRRSKEAQVHGKVKKMSRTGKVPNNYFCF 260
>AT1G67590.1 | Symbols: | Remorin family protein |
chr1:25333137-25334472 REVERSE LENGTH=347
Length = 347
Score = 60.5 bits (145), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 58/112 (51%), Gaps = 1/112 (0%)
Query: 47 STQETKADEWERTELDKIRQRYEKLKETIDSWENKKKMKARHKLVKQESELERRRFKALQ 106
S E +A W+ E K RY++ + I +WEN +K KA ++ K E + ER + +A +
Sbjct: 227 SAMEARAMAWDEAERAKFMARYKREEVKIQAWENHEKRKAEMEMKKMEVKAERMKARAEE 286
Query: 107 SFQNKMTNVDKIAEGARTKAVENRKNEELKTKEKANAIRTTGKLP-GICFCF 157
NK+ +IAE R A + +KT EKA+ IR +G LP F F
Sbjct: 287 KLANKLAATKRIAEERRANAEAKLNEKAVKTSEKADYIRRSGHLPSSFSFSF 338
>AT5G23750.2 | Symbols: | Remorin family protein |
chr5:8010004-8011453 REVERSE LENGTH=201
Length = 201
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 51/103 (49%), Gaps = 1/103 (0%)
Query: 56 WERTELDKIRQRYEKLKETIDSWENKKKMKARHKLVKQESELERRRFKALQSFQNKMTNV 115
WE E K+ + EK +I SWEN KK +L K E +LE+++ + ++ +NK+ +
Sbjct: 99 WEEAEKCKVENKAEKKLSSIGSWENNKKAAVEAELKKMEEQLEKKKAEYVEQMKNKIAQI 158
Query: 116 DKIAEGARTKAVENRKNEELKTKEKANAIRTTGKLPGICF-CF 157
K AE R R E LK +E A R TG P F C
Sbjct: 159 HKEAEEKRAMIEAKRGEEILKAEELAAKYRATGTAPKKLFGCM 201
>AT5G23750.1 | Symbols: | Remorin family protein |
chr5:8010004-8011453 REVERSE LENGTH=202
Length = 202
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 51/103 (49%), Gaps = 1/103 (0%)
Query: 56 WERTELDKIRQRYEKLKETIDSWENKKKMKARHKLVKQESELERRRFKALQSFQNKMTNV 115
WE E K+ + EK +I SWEN KK +L K E +LE+++ + ++ +NK+ +
Sbjct: 100 WEEAEKCKVENKAEKKLSSIGSWENNKKAAVEAELKKMEEQLEKKKAEYVEQMKNKIAQI 159
Query: 116 DKIAEGARTKAVENRKNEELKTKEKANAIRTTGKLPGICF-CF 157
K AE R R E LK +E A R TG P F C
Sbjct: 160 HKEAEEKRAMIEAKRGEEILKAEELAAKYRATGTAPKKLFGCM 202
>AT3G61260.1 | Symbols: | Remorin family protein |
chr3:22675403-22676701 REVERSE LENGTH=212
Length = 212
Score = 53.5 bits (127), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 51/103 (49%), Gaps = 1/103 (0%)
Query: 56 WERTELDKIRQRYEKLKETIDSWENKKKMKARHKLVKQESELERRRFKALQSFQNKMTNV 115
WE +E K + EK + +WEN KK +L K E +LE+++ + + +NK+ +
Sbjct: 110 WEESEKSKAENKAEKKIADVHAWENSKKAAVEAQLKKIEEQLEKKKAEYAERMKNKVAAI 169
Query: 116 DKIAEGARTKAVENRKNEELKTKEKANAIRTTGKLP-GICFCF 157
K AE R R + LK +E A R TG +P C CF
Sbjct: 170 HKEAEERRAMIEAKRGEDVLKAEETAAKYRATGIVPKATCGCF 212
>AT2G02170.2 | Symbols: | Remorin family protein |
chr2:556595-558610 REVERSE LENGTH=486
Length = 486
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 61/112 (54%), Gaps = 1/112 (0%)
Query: 47 STQETKADEWERTELDKIRQRYEKLKETIDSWENKKKMKARHKLVKQESELERRRFKALQ 106
S E +A WE E K R+ + + I +WEN +K K+ ++ K E ++ER + +A
Sbjct: 371 SVSEARATAWEEAEKAKHMARFRREEMKIQAWENHQKAKSEAEMKKTEVKVERIKGRAQD 430
Query: 107 SFQNKMTNVDKIAEGARTKAVENRKNEELKTKEKANAIRTTGKLPGICF-CF 157
K+ +++ AE R A + ++ KT+++A IR TGK+P + F CF
Sbjct: 431 RLMKKLATIERKAEEKRAAAEAKKDHQAAKTEKQAEQIRRTGKVPSLLFSCF 482
>AT2G02170.1 | Symbols: | Remorin family protein |
chr2:556595-558610 REVERSE LENGTH=486
Length = 486
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 61/112 (54%), Gaps = 1/112 (0%)
Query: 47 STQETKADEWERTELDKIRQRYEKLKETIDSWENKKKMKARHKLVKQESELERRRFKALQ 106
S E +A WE E K R+ + + I +WEN +K K+ ++ K E ++ER + +A
Sbjct: 371 SVSEARATAWEEAEKAKHMARFRREEMKIQAWENHQKAKSEAEMKKTEVKVERIKGRAQD 430
Query: 107 SFQNKMTNVDKIAEGARTKAVENRKNEELKTKEKANAIRTTGKLPGICF-CF 157
K+ +++ AE R A + ++ KT+++A IR TGK+P + F CF
Sbjct: 431 RLMKKLATIERKAEEKRAAAEAKKDHQAAKTEKQAEQIRRTGKVPSLLFSCF 482
>AT2G41870.1 | Symbols: | Remorin family protein |
chr2:17471119-17472519 REVERSE LENGTH=274
Length = 274
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 53/110 (48%), Gaps = 2/110 (1%)
Query: 50 ETKADEWERTELDKIRQRYEKLKETIDSWENKKKMKARHKLVKQESELERRRFKALQSFQ 109
E K W+ +L KI R+++ I+ W N++ KA + K E +LE R+ KA++ Q
Sbjct: 164 EAKITAWQTAKLAKINNRFKREDAVINGWFNEQVNKANSWMKKIERKLEERKAKAMEKTQ 223
Query: 110 NKMTNVDKIAEGARTKAVENRKNEELKTKEKANAIRTTGKLPG--ICFCF 157
N + + AE R A R E K E AN +R G+ P F F
Sbjct: 224 NNVAKAQRKAEERRATAEAKRGTEVAKVVEVANLMRALGRPPAKRSFFSF 273
>AT3G57540.1 | Symbols: | Remorin family protein |
chr3:21301623-21302924 REVERSE LENGTH=296
Length = 296
Score = 49.7 bits (117), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 52/102 (50%)
Query: 50 ETKADEWERTELDKIRQRYEKLKETIDSWENKKKMKARHKLVKQESELERRRFKALQSFQ 109
E K W+ ++ KI R+++ I+ W N++ +A + K E +LE RR KA++ Q
Sbjct: 186 EAKITAWQTAKVAKINNRFKRQDAVINGWLNEQVHRANSWMKKIERKLEDRRAKAMEKTQ 245
Query: 110 NKMTNVDKIAEGARTKAVENRKNEELKTKEKANAIRTTGKLP 151
NK+ + AE R A R E + E AN +R G+ P
Sbjct: 246 NKVAKAQRKAEERRATAEGKRGTEVARVLEVANLMRAVGRPP 287
>AT3G48940.1 | Symbols: | Remorin family protein |
chr3:18142863-18144163 REVERSE LENGTH=175
Length = 175
Score = 49.7 bits (117), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 48/102 (47%)
Query: 56 WERTELDKIRQRYEKLKETIDSWENKKKMKARHKLVKQESELERRRFKALQSFQNKMTNV 115
WE E K+ + +K ++ +WEN KK +L K E +L +++ + +NK+ +
Sbjct: 73 WEEAEKSKVENKAQKKISSVGAWENSKKASVEAELKKIEEQLNKKKAHYTEQMKNKIAQI 132
Query: 116 DKIAEGARTKAVENRKNEELKTKEKANAIRTTGKLPGICFCF 157
K AE R R + LK +E A R TG P F F
Sbjct: 133 HKEAEEKRAMTEAKRGEDVLKAEEMAAKYRATGTAPTKLFGF 174
>AT2G45820.1 | Symbols: | Remorin family protein |
chr2:18863147-18864576 REVERSE LENGTH=190
Length = 190
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 55/104 (52%), Gaps = 3/104 (2%)
Query: 56 WERTELDKIRQRYEKLKETIDSWENKKKMKARHKLVKQESELERRRFKALQSFQNKMTNV 115
WE +E K R +K + +WEN KK +L K E +LE+++ + + +NK+ +
Sbjct: 88 WEESEKSKAENRAQKKISDVHAWENSKKAAVEAQLRKIEEKLEKKKAQYGEKMKNKVAAI 147
Query: 116 DKIAEGARTKAVENRKNEE-LKTKEKANAIRTTGKLP-GICFCF 157
K+AE R VE +K EE LK +E R TG +P C CF
Sbjct: 148 HKLAEEKRA-MVEAKKGEELLKAEEMGAKYRATGVVPKATCGCF 190