Miyakogusa Predicted Gene

Lj2g3v1252520.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj2g3v1252520.1 Non Chatacterized Hit- tr|F6HCQ5|F6HCQ5_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,62.86,1e-18,DUF1675,Protein of unknown function DUF1675;
coiled-coil,NULL; seg,NULL; SUBFAMILY NOT NAMED,NULL; F,CUFF.36567.1
         (381 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G13740.1 | Symbols: AFP2 | ABI five binding protein 2 | chr1:...   145   5e-35
AT3G29575.4 | Symbols: AFP3 | ABI five binding protein 3 | chr3:...   140   2e-33
AT3G29575.3 | Symbols: AFP3 | ABI five binding protein 3 | chr3:...   140   2e-33
AT3G29575.1 | Symbols: AFP3 | ABI five binding protein 3 | chr3:...   140   2e-33
AT1G69260.1 | Symbols: AFP1 | ABI five binding protein | chr1:26...   133   2e-31
AT3G02140.1 | Symbols: TMAC2, AFP4 | AFP2 (ABI five-binding prot...    98   8e-21
AT3G07250.1 | Symbols:  | nuclear transport factor 2 (NTF2) fami...    98   9e-21
AT4G28910.3 | Symbols: NINJA | novel interactor of JAZ | chr4:14...    63   3e-10
AT4G28910.1 | Symbols: NINJA | novel interactor of JAZ | chr4:14...    63   3e-10
AT4G28910.2 | Symbols: NINJA | novel interactor of JAZ | chr4:14...    63   3e-10

>AT1G13740.1 | Symbols: AFP2 | ABI five binding protein 2 |
           chr1:4713969-4715158 FORWARD LENGTH=348
          Length = 348

 Score =  145 bits (365), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 78/150 (52%), Positives = 97/150 (64%), Gaps = 7/150 (4%)

Query: 234 EMDSKPVLGSS-SCGEARSPASTQSLQERSNQDAMRSSGPK-TEENKIRSSRAEVENLCK 291
           E+D+K   GSS SC + RSP         SN  +  +  P  T  NK+  +  E E   +
Sbjct: 203 ELDNKNQQGSSNSCNDERSPKIVAGCS--SNSGSQGTERPSVTRANKVNEN--ENEKRVR 258

Query: 292 KPNPSQNMGRDFGTNP-MEDMPCVFTKGDGPNGKRIEGILYKYGKGEEVRIMCVCHGNFL 350
             +     G+   T+  + DMPCVFTKGDGPNG+R++GILYKYGKGEEVRIMC+CHG+FL
Sbjct: 259 SEDSVDRKGKGMATSTGLVDMPCVFTKGDGPNGRRVDGILYKYGKGEEVRIMCICHGSFL 318

Query: 351 SPAEFVKHAGGGDVAHPLRQIVVNPSGAPF 380
           +PAEFVKH GGGDV  PLR IVVN S + F
Sbjct: 319 TPAEFVKHGGGGDVDRPLRHIVVNTSSSTF 348



 Score = 89.7 bits (221), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 60/136 (44%), Positives = 75/136 (55%), Gaps = 17/136 (12%)

Query: 1   MKMEKDPRDLLQRFLVSSGGSEKIDNRXXXXXXXXXXXXXXXXXXXXXXXXXXXSLGGRF 60
           + ++K PRDLL+ F+  +GG                                  SLGGRF
Sbjct: 23  LDIDKYPRDLLRGFMSENGGGRVFHG-----------GETNCDDESTIELNLGLSLGGRF 71

Query: 61  GVDKHAKNQHLVRSSSVVGTMPLLREDSEEASPAYST--LVRSSSLPSETEEEWRKRKKL 118
           GVDK  +   L RSSSV+ T+P    DS  A P   T  L R++SLP+E EEEWRKRK++
Sbjct: 72  GVDKTPR--KLKRSSSVLDTVPF--NDSTVAEPENYTVGLERTTSLPAEMEEEWRKRKEM 127

Query: 119 QTLRRMEAKRRRSEKQ 134
           Q+LRRMEAKRRR EKQ
Sbjct: 128 QSLRRMEAKRRRCEKQ 143


>AT3G29575.4 | Symbols: AFP3 | ABI five binding protein 3 |
           chr3:11382416-11383657 REVERSE LENGTH=231
          Length = 231

 Score =  140 bits (352), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 62/85 (72%), Positives = 72/85 (84%), Gaps = 2/85 (2%)

Query: 297 QNMGRDFGTNPMEDMPCVFTKGDGPNGKRIEGILYKYGKGEEVRIMCVCHGNFLSPAEFV 356
           +N+G++   N +EDMP V T GDGPNGK+I G LY+Y KGEEVRI+CVCHG+FLSPAEFV
Sbjct: 149 ENLGKEASQNIIEDMPFVSTTGDGPNGKKINGFLYRYRKGEEVRIVCVCHGSFLSPAEFV 208

Query: 357 KHAGGGDVAHPLRQIVVNPSGAPFL 381
           KHAGGGDVAHPL+ IVVNPS  PFL
Sbjct: 209 KHAGGGDVAHPLKHIVVNPS--PFL 231



 Score = 79.0 bits (193), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 49/85 (57%), Positives = 60/85 (70%), Gaps = 11/85 (12%)

Query: 55  SLGGRFGVDKHAKNQHLVRSSSVVGTMPLLREDSEEASPAYSTLVRSSSLPSETEEEWRK 114
           SL GRFGVD  AK + L+RS+SV   + L+  D        S L R+ SLP ETEEEWRK
Sbjct: 23  SLNGRFGVDPLAKTR-LMRSTSV---LDLVVNDR-------SGLSRTCSLPVETEEEWRK 71

Query: 115 RKKLQTLRRMEAKRRRSEKQRGSKS 139
           RK+LQ+LRR+EAKR+RSEKQR  K+
Sbjct: 72  RKELQSLRRLEAKRKRSEKQRKHKA 96


>AT3G29575.3 | Symbols: AFP3 | ABI five binding protein 3 |
           chr3:11382416-11383657 REVERSE LENGTH=231
          Length = 231

 Score =  140 bits (352), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 62/85 (72%), Positives = 72/85 (84%), Gaps = 2/85 (2%)

Query: 297 QNMGRDFGTNPMEDMPCVFTKGDGPNGKRIEGILYKYGKGEEVRIMCVCHGNFLSPAEFV 356
           +N+G++   N +EDMP V T GDGPNGK+I G LY+Y KGEEVRI+CVCHG+FLSPAEFV
Sbjct: 149 ENLGKEASQNIIEDMPFVSTTGDGPNGKKINGFLYRYRKGEEVRIVCVCHGSFLSPAEFV 208

Query: 357 KHAGGGDVAHPLRQIVVNPSGAPFL 381
           KHAGGGDVAHPL+ IVVNPS  PFL
Sbjct: 209 KHAGGGDVAHPLKHIVVNPS--PFL 231



 Score = 79.0 bits (193), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 49/85 (57%), Positives = 60/85 (70%), Gaps = 11/85 (12%)

Query: 55  SLGGRFGVDKHAKNQHLVRSSSVVGTMPLLREDSEEASPAYSTLVRSSSLPSETEEEWRK 114
           SL GRFGVD  AK + L+RS+SV   + L+  D        S L R+ SLP ETEEEWRK
Sbjct: 23  SLNGRFGVDPLAKTR-LMRSTSV---LDLVVNDR-------SGLSRTCSLPVETEEEWRK 71

Query: 115 RKKLQTLRRMEAKRRRSEKQRGSKS 139
           RK+LQ+LRR+EAKR+RSEKQR  K+
Sbjct: 72  RKELQSLRRLEAKRKRSEKQRKHKA 96


>AT3G29575.1 | Symbols: AFP3 | ABI five binding protein 3 |
           chr3:11382416-11383657 REVERSE LENGTH=231
          Length = 231

 Score =  140 bits (352), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 62/85 (72%), Positives = 72/85 (84%), Gaps = 2/85 (2%)

Query: 297 QNMGRDFGTNPMEDMPCVFTKGDGPNGKRIEGILYKYGKGEEVRIMCVCHGNFLSPAEFV 356
           +N+G++   N +EDMP V T GDGPNGK+I G LY+Y KGEEVRI+CVCHG+FLSPAEFV
Sbjct: 149 ENLGKEASQNIIEDMPFVSTTGDGPNGKKINGFLYRYRKGEEVRIVCVCHGSFLSPAEFV 208

Query: 357 KHAGGGDVAHPLRQIVVNPSGAPFL 381
           KHAGGGDVAHPL+ IVVNPS  PFL
Sbjct: 209 KHAGGGDVAHPLKHIVVNPS--PFL 231



 Score = 79.0 bits (193), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 49/85 (57%), Positives = 60/85 (70%), Gaps = 11/85 (12%)

Query: 55  SLGGRFGVDKHAKNQHLVRSSSVVGTMPLLREDSEEASPAYSTLVRSSSLPSETEEEWRK 114
           SL GRFGVD  AK + L+RS+SV   + L+  D        S L R+ SLP ETEEEWRK
Sbjct: 23  SLNGRFGVDPLAKTR-LMRSTSV---LDLVVNDR-------SGLSRTCSLPVETEEEWRK 71

Query: 115 RKKLQTLRRMEAKRRRSEKQRGSKS 139
           RK+LQ+LRR+EAKR+RSEKQR  K+
Sbjct: 72  RKELQSLRRLEAKRKRSEKQRKHKA 96


>AT1G69260.1 | Symbols: AFP1 | ABI five binding protein |
           chr1:26039314-26040570 FORWARD LENGTH=345
          Length = 345

 Score =  133 bits (335), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 73/144 (50%), Positives = 92/144 (63%), Gaps = 3/144 (2%)

Query: 235 MDSKPVLGSSSCG--EARSPASTQSLQERSNQDAMRSSGPKTEENKIRSSRAEVENLCKK 292
           +DS  V G S  G   A S +S   L+ +++ D  RS  P T + +  ++      L + 
Sbjct: 197 LDSLQVSGESLGGGRAAGSSSSVSELETKASSDEARSL-PSTTQPQQETTTKPTNRLRRL 255

Query: 293 PNPSQNMGRDFGTNPMEDMPCVFTKGDGPNGKRIEGILYKYGKGEEVRIMCVCHGNFLSP 352
            +   NM  +       +MPCVFTKGDGPNGKR++GILY+YG GEEVRIMCVCHG+FLSP
Sbjct: 256 SSVDMNMKMEPQGKGKSEMPCVFTKGDGPNGKRVDGILYRYGSGEEVRIMCVCHGDFLSP 315

Query: 353 AEFVKHAGGGDVAHPLRQIVVNPS 376
           A+FVKHAGG  V HPLR IVVN S
Sbjct: 316 ADFVKHAGGPHVDHPLRHIVVNTS 339



 Score = 96.3 bits (238), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 66/146 (45%), Positives = 78/146 (53%), Gaps = 35/146 (23%)

Query: 7   PRDLLQRFLVSSGGSEKIDNRXXXXXXXXXXXXXXXXXXXXXXXXXXXSLGGRFGVDKHA 66
           PRDLLQRF+ +S                                    SLGGRFGVDK  
Sbjct: 20  PRDLLQRFISNS---------------VEGEDDDEEEDDDEIELNLGLSLGGRFGVDKSN 64

Query: 67  KNQHLVRSSSVVGTMPLLREDSE--EASPAYST---------------LVRSSSLPSETE 109
           K   LVRSSSVV TMPL RED    +A+   +T               L+R++SLP+E+E
Sbjct: 65  K---LVRSSSVVVTMPLFREDHHHHQAAAMITTKVSTETVAGATRGTGLMRTTSLPAESE 121

Query: 110 EEWRKRKKLQTLRRMEAKRRRSEKQR 135
           EEWRKRK++QTLRRM AKRRRSEK R
Sbjct: 122 EEWRKRKEMQTLRRMAAKRRRSEKLR 147


>AT3G02140.1 | Symbols: TMAC2, AFP4 | AFP2 (ABI five-binding protein
           2) family protein | chr3:385478-386437 REVERSE
           LENGTH=319
          Length = 319

 Score = 98.2 bits (243), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 51/92 (55%), Positives = 63/92 (68%), Gaps = 9/92 (9%)

Query: 291 KKPNPSQNMGRDFGTNPMEDMPCVFTKGDGPNGKRIEGILYKYGKG-EEVRIMCVCHGNF 349
           K+ N  +N G +   N +EDMPCV T+  G +GKR+EG LY YG   EEV+I+CVCHG+F
Sbjct: 221 KQKNNVENSGMEKARNILEDMPCVSTRDVGADGKRVEGFLYWYGGNKEEVKIVCVCHGSF 280

Query: 350 LSPAEFVKHAG-------GGDV-AHPLRQIVV 373
           LSPAEFV+H G       GGDV  +PLR IVV
Sbjct: 281 LSPAEFVRHGGGTVSDDDGGDVMINPLRHIVV 312


>AT3G07250.1 | Symbols:  | nuclear transport factor 2 (NTF2) family
           protein / RNA recognition motif (RRM)-containing protein
           | chr3:2300579-2308305 REVERSE LENGTH=1294
          Length = 1294

 Score = 98.2 bits (243), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 51/131 (38%), Positives = 71/131 (54%), Gaps = 3/131 (2%)

Query: 243 SSSCGEARSPASTQSLQERSNQDAMRSSGPKTEENKIRSSRAEVENLCKKPNPSQNMGRD 302
           S    + RSP +  ++   + Q    + G K  E +  S+ +  +   K P P  N   +
Sbjct: 154 SGQTKQVRSPVN--NILTGTEQTVHNTDGSKDAETQEWSNSSVTKESGKPPKPHTNSNGN 211

Query: 303 FGTNPMEDMPCVFTKGDGPNGKRIEGILYKYGKGEEVRIMCVCHGNFLSPAEFVKHAGGG 362
               P   MPCV + G+GP GK + G LY+Y K E + I+CVCHG   SPAEF+ HAGG 
Sbjct: 212 GSLLPFAQMPCVTSTGNGPEGKTVNGFLYRYSKSE-ISIICVCHGTSFSPAEFIVHAGGT 270

Query: 363 DVAHPLRQIVV 373
           +V+HPLR I V
Sbjct: 271 NVSHPLRHITV 281


>AT4G28910.3 | Symbols: NINJA | novel interactor of JAZ |
           chr4:14264330-14265680 REVERSE LENGTH=425
          Length = 425

 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 36/50 (72%), Gaps = 1/50 (2%)

Query: 310 DMPCVFTKGDGPNGKRIEGILYKYGKGEEVRIMCVCHGNFLSPAEFVKHA 359
           ++P V T G GP+G+ I G+ Y+Y    +++I+C CHG+ +SP EFV+HA
Sbjct: 357 NLPWVSTTGSGPHGRTISGVTYRY-NANQIKIVCACHGSHMSPEEFVRHA 405


>AT4G28910.1 | Symbols: NINJA | novel interactor of JAZ |
           chr4:14264330-14265680 REVERSE LENGTH=425
          Length = 425

 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 36/50 (72%), Gaps = 1/50 (2%)

Query: 310 DMPCVFTKGDGPNGKRIEGILYKYGKGEEVRIMCVCHGNFLSPAEFVKHA 359
           ++P V T G GP+G+ I G+ Y+Y    +++I+C CHG+ +SP EFV+HA
Sbjct: 357 NLPWVSTTGSGPHGRTISGVTYRY-NANQIKIVCACHGSHMSPEEFVRHA 405


>AT4G28910.2 | Symbols: NINJA | novel interactor of JAZ |
           chr4:14264330-14265680 REVERSE LENGTH=425
          Length = 425

 Score = 63.2 bits (152), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 36/50 (72%), Gaps = 1/50 (2%)

Query: 310 DMPCVFTKGDGPNGKRIEGILYKYGKGEEVRIMCVCHGNFLSPAEFVKHA 359
           ++P V T G GP+G+ I G+ Y+Y    +++I+C CHG+ +SP EFV+HA
Sbjct: 357 NLPWVSTTGSGPHGRTISGVTYRY-NANQIKIVCACHGSHMSPEEFVRHA 405